jgi.p|Nanoce1779_2|583121, mRNA_3704 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583121
Unique NamemRNA_3704
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length871
Alignment locationscaffold_6:1029968..1030838 -

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Properties
Property NameValue
TranscriptId583207
TrackFilteredModels2
ProteinId583121
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1029968..1030838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583121gene_3704Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583121mRNA_3704-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3704CDS_3704Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3704 ID=mRNA_3704|Name=jgi.p|Nanoce1779_2|583121|organism=Nannochloropsis oceanica|type=mRNA|length=871bp
ACAGGGACAACTCCGCTACAGCGAAGGTAACGACGAGAAGAAGGGGGTGC
AGGCTACGTCTGTATCCCTAGGTCGACTCCCTGGCCAAGATTTGCCGCAC
ACATCTAAATGGAGGCTGTTCCGAATGCCCCGTCTCCCATGCTCGACCGC
ATTATTGAGGGGCATGGGACCTTGCCTCTCTTCCTCTCAACGGTTGCGGG
TGCCTTGTTGGCCCTCTTTTTTGTCTACTTGGTTCGGGCCTTGCATCGGT
ATCTAAGAAGAAGAGCAGGAGAAGGAGAAAGTGGAGGGACAGGACAAGAA
CTGGAAGTCCAGTATACGGAGTTGCCCCGACGACGGCGAGGACGACGCAG
CCGTCACTTCGAGGATAGGGAGGAGGAAGAAGATGACGATCATGACATGA
TAGAGGACATTTTTGATGATTTGTATGGGTACGAGGAGGAGTTGGACTTT
GGTGTAGAGCGTCGCAATATTGCCACGCCGACATTTACGCACGCGTCGCC
CACGTCACCAGTATCACTACCACCATTAGTAGCAACAGCAGCAGGAGCAG
CGGCGACCACAACATTCACAAAAATAGGAGAGAATGTGAACGAAATCAGC
AGTAGTGAGATGCCGGACAATGCGTCTGAAATGTCACGGCCTGTGCTTGC
AGGGGTGGTTGCTGGCATCCAGCAGAAGAGGTCGGAGGAGAGCGAGGGGA
GGGGTAAGGAGGGGAAACACGCAAAAGGCAGGCTACGAGATGAGGTCGTA
GAGAATAAATGGGAAGAAGATGAGGGTCTGGAAACTGGTGCTGCTGTTCT
GAGATGAATCGCAGCCGTAGCTCCGAAAAAAAGTCTGGAGTTTAAAAGAA
GTGCATACGATGGGGACAACA
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protein sequence of jgi.p|Nanoce1779_2|583121

>mRNA_3704-protein ID=mRNA_3704-protein|Name=jgi.p|Nanoce1779_2|583121|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MEAVPNAPSPMLDRIIEGHGTLPLFLSTVAGALLALFFVYLVRALHRYLR
RRAGEGESGGTGQELEVQYTELPRRRRGRRSRHFEDREEEEDDDHDMIED
IFDDLYGYEEELDFGVERRNIATPTFTHASPTSPVSLPPLVATAAGAAAT
TTFTKIGENVNEISSSEMPDNASEMSRPVLAGVVAGIQQKRSEESEGRGK
EGKHAKGRLRDEVVENKWEEDEGLETGAAVL
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mRNA from alignment at scaffold_6:1029968..1030838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3704 ID=mRNA_3704|Name=jgi.p|Nanoce1779_2|583121|organism=Nannochloropsis oceanica|type=mRNA|length=871bp|location=Sequence derived from alignment at scaffold_6:1029968..1030838- (Nannochloropsis oceanica)
ACAGGGACAACTCCGCTACAGCGAAGGTAACGACGAGAAGAAGGGGGTGC
AGGCTACGTCTGTATCCCTAGGTCGACTCCCTGGCCAAGATTTGCCGCAC
ACATCTAAATGGAGGCTGTTCCGAATGCCCCGTCTCCCATGCTCGACCGC
ATTATTGAGGGGCATGGGACCTTGCCTCTCTTCCTCTCAACGGTTGCGGG
TGCCTTGTTGGCCCTCTTTTTTGTCTACTTGGTTCGGGCCTTGCATCGGT
ATCTAAGAAGAAGAGCAGGAGAAGGAGAAAGTGGAGGGACAGGACAAGAA
CTGGAAGTCCAGTATACGGAGTTGCCCCGACGACGGCGAGGACGACGCAG
CCGTCACTTCGAGGATAGGGAGGAGGAAGAAGATGACGATCATGACATGA
TAGAGGACATTTTTGATGATTTGTATGGGTACGAGGAGGAGTTGGACTTT
GGTGTAGAGCGTCGCAATATTGCCACGCCGACATTTACGCACGCGTCGCC
CACGTCACCAGTATCACTACCACCATTAGTAGCAACAGCAGCAGGAGCAG
CGGCGACCACAACATTCACAAAAATAGGAGAGAATGTGAACGAAATCAGC
AGTAGTGAGATGCCGGACAATGCGTCTGAAATGTCACGGCCTGTGCTTGC
AGGGGTGGTTGCTGGCATCCAGCAGAAGAGGTCGGAGGAGAGCGAGGGGA
GGGGTAAGGAGGGGAAACACGCAAAAGGCAGGCTACGAGATGAGGTCGTA
GAGAATAAATGGGAAGAAGATGAGGGTCTGGAAACTGGTGCTGCTGTTCT
GAGATGAATCGCAGCCGTAGCTCCGAAAAAAAGTCTGGAGTTTAAAAGAA
GTGCATACGATGGGGACAACA
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Coding sequence (CDS) from alignment at scaffold_6:1029968..1030838-

>mRNA_3704 ID=mRNA_3704|Name=jgi.p|Nanoce1779_2|583121|organism=Nannochloropsis oceanica|type=CDS|length=694bp|location=Sequence derived from alignment at scaffold_6:1029968..1030838- (Nannochloropsis oceanica)
ATGGAGGCTGTTCCGAATGCCCCGTCTCCCATGCTCGACCGCATTATTGA
GGGGCATGGGACCTTGCCTCTCTTCCTCTCAACGGTTGCGGGTGCCTTGT
TGGCCCTCTTTTTTGTCTACTTGGTTCGGGCCTTGCATCGGTATCTAAGA
AGAAGAGCAGGAGAAGGAGAAAGTGGAGGGACAGGACAAGAACTGGAAGT
CCAGTATACGGAGTTGCCCCGACGACGGCGAGGACGACGCAGCCGTCACT
TCGAGGATAGGGAGGAGGAAGAAGATGACGATCATGACATGATAGAGGAC
ATTTTTGATGATTTGTATGGGTACGAGGAGGAGTTGGACTTTGGTGTAGA
GCGTCGCAATATTGCCACGCCGACATTTACGCACGCGTCGCCCACGTCAC
CAGTATCACTACCACCATTAGTAGCAACAGCAGCAGGAGCAGCGGCGACC
ACAACATTCACAAAAATAGGAGAGAATGTGAACGAAATCAGCAGTAGTGA
GATGCCGGACAATGCGTCTGAAATGTCACGGCCTGTGCTTGCAGGGGTGG
TTGCTGGCATCCAGCAGAAGAGGTCGGAGGAGAGCGAGGGGAGGGGTAAG
GAGGGGAAACACGCAAAAGGCAGGCTACGAGATGAGGTCGTAGAGAATAA
ATGGGAAGAAGATGAGGGTCTGGAAACTGGTGCTGCTGTTCTGA
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Synonyms
Publications