jgi.p|Nanoce1779_2|553175, mRNA_3703 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553175
Unique Name	mRNA_3703
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2041
Alignment location	scaffold_6:1027911..1029951 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	553261
Track	FilteredModels2
ProteinId	553175

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1027911..1029951 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553175	gene_3703	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553175	mRNA_3703-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3703	CDS_3703	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1027911..1029951+
coding sequence from alignment at scaffold_6:1027911..1029951+

mRNA sequence

>mRNA_3703 ID=mRNA_3703|Name=jgi.p|Nanoce1779_2|553175|organism=Nannochloropsis oceanica|type=mRNA|length=2041bp
GGAAGAAATATGATTCCATCGCTCCACGCGCTGGGCAAGAGCTGAGTTCC
ACGTCTCACTTTCTCTCCCGACAGCCAGTCACATAAGCCAACCAGCCGGA
GCCTTGCCTCGCAAACAGGCACAATTTCCCGCAGAGGGAAGCAGGTGTAG
CACTTGCGGATGGCTTCAAGCTTCGCGAGCGCAGAGACGGACGACGCGTT
CCAGGAGGGCAGCGGGTGGCAGACCCAATAATCTCTGTTACTCATCTTCT
CCACGACTTTTTACCACGCTGCACACATAAATCGATGGAAGTGACGTCGT
ACTAAATGGATGTTTCCGGCGGAAGCGCAGAGAACATGATAAGAGTCTCC
AACAAAAGTTTCAAGATTAGTTTTTGGCATGTTGCATCAGACTGCACCTT
TGGGGAGGGCATTTTGTGGCGCATGCGGAGGCAGGCCGACGCTATATCAA
ATACGCATGAATAGAACGCTAGAATTTTGTGTAGTTAAATCATCTCTTTG
GTGTGGCTCTGACGTATACATGCTCATTCTCCACCATAAACTTCGAAAGA
CTCCCCTGCTCGTCGACCTCCTGTCTCCCCGTCCTCACCTCAACTCAACC
ACCCACATACATCGCAATGTAAACCACACACTACAGATCCAAGAATGGAA
ATCCCCTCGCAAATGGCGGACCCAAATGCCTACCACGTCTTTCCAGGAGA
CGAAGTTGGTGGCGGCTTGGGAAAAGACAAGGATGTAAACCTGGAACCTT
CGGCAGCGGAGCGAGAAAAAGAAGCATACCTCCATCCCTGCTGCCAAAAG
GAGCTAGAGTCTACGCGGGCCCGCACCAAACTTATGACGAAGTTGCGTGC
TGTTGACATCACTCGGCAAGCGATGGATCGGCGGAAGGGTGTGGTGGGGT
TGAGCGAGGAGCAGCACCAGCATGAGCATGGAGCAGGGTGTTGTGCGTTG
ATGGCGGACTACCCGGCCTTGGCTCGCTTGCGGGTAACGAGGGACGGAGG
GGTAGTAACAAGGCAAGACTATGATGACATGGAAAGAAGGAGGAGCAGCA
GCGGCATCAGCAGCAGAGAGGTGGTGGCATCGTATGAAGAGGGCGAGGAC
GAGGAGGACTCCGAGGAAGATGGCGACGACGATATTTTGCGTGAATTGGA
GGCCGGGGACGATGGAGGCTTTCTCGAAATTCGTCGAGCGGAATTGATGC
GCCAGGCTCAAGAAGCGGCTGAAATCCAGTACTTGGGTATCGGGCTGCAC
ACTGAATTACCCCCCAATCGAGTGCTTGACCTTGTATACCTCCGGTGTTG
TCATCTGGTGGTTCATTGCTATGACCCCTATGGAGAGACGAGTGCCGTGT
TGGACTTACAATTGGAAGGGTTGGCAAAGATGTATCCAGGGACGCGGTTT
GTTCGGACGCCCTTTGGGGGAGGAGAAGGCTTGAGGCAAGCGTTACGAGT
GCCTGCCCCGGGGAGTGGGAGTGGTTACACCAAGTCCGTATTGTTGAGCT
TGAGGGATGGGTCTCTGGTTGATAGTTGCTATGATTATGGGAGAAGGTTT
GGGGAGGGGAGGGAGGGAAGGAGGGAGGGAGGGGAGGTGTACTTGGAGGC
GGTGGAGCAGTGGTTGAGGCATTGCCAAGTGCTGGAGAGGGAGAGGATGG
ATGTGGAGAGGGCTCGGAAAATGAGGTTGTTGTTGAAAGCGCAGATGGGG
AGAAAGGGGGGGAAGGGAGGGAGGACAGGGGTGGGGATGCGGATGGCGAT
TACGGCGGGAGGGCAGGAGAGAGATGAGGAGGTGGAGGATGGGGGGGAGG
ACGAGGACGAGGCCGAGTTTTATGAGTGTGGATTGGAAGGGTGCTACAAG
CCCTTCATTCACTCACATGTGGGGATGGAGGGTATACAAATGCCGAAAGA
ATTTGGCGCGATTGGGGAGCATTGACGTAGGACAAGCAACTCCCACAACA
ACACAAAAGAAGAGGATCTCGGAGCAGTAACGAGTAGGAAATAAGAATAA
AAATATCACACAGTTCTACGGTGTGATCACTTTGGCCTCGG

protein sequence of jgi.p|Nanoce1779_2|553175

>mRNA_3703-protein ID=mRNA_3703-protein|Name=jgi.p|Nanoce1779_2|553175|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MEIPSQMADPNAYHVFPGDEVGGGLGKDKDVNLEPSAAEREKEAYLHPCC
QKELESTRARTKLMTKLRAVDITRQAMDRRKGVVGLSEEQHQHEHGAGCC
ALMADYPALARLRVTRDGGVVTRQDYDDMERRRSSSGISSREVVASYEEG
EDEEDSEEDGDDDILRELEAGDDGGFLEIRRAELMRQAQEAAEIQYLGIG
LHTELPPNRVLDLVYLRCCHLVVHCYDPYGETSAVLDLQLEGLAKMYPGT
RFVRTPFGGGEGLRQALRVPAPGSGSGYTKSVLLSLRDGSLVDSCYDYGR
RFGEGREGRREGGEVYLEAVEQWLRHCQVLERERMDVERARKMRLLLKAQ
MGRKGGKGGRTGVGMRMAITAGGQERDEEVEDGGEDEDEAEFYECGLEGC
YKPFIHSHVGMEGIQMPKEFGAIGEH*

mRNA from alignment at scaffold_6:1027911..1029951+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3703 ID=mRNA_3703|Name=jgi.p|Nanoce1779_2|553175|organism=Nannochloropsis oceanica|type=mRNA|length=2041bp|location=Sequence derived from alignment at scaffold_6:1027911..1029951+ (Nannochloropsis oceanica)
GGAAGAAATATGATTCCATCGCTCCACGCGCTGGGCAAGAGCTGAGTTCC
ACGTCTCACTTTCTCTCCCGACAGCCAGTCACATAAGCCAACCAGCCGGA
GCCTTGCCTCGCAAACAGGCACAATTTCCCGCAGAGGGAAGCAGGTGTAG
CACTTGCGGATGGCTTCAAGCTTCGCGAGCGCAGAGACGGACGACGCGTT
CCAGGAGGGCAGCGGGTGGCAGACCCAATAATCTCTGTTACTCATCTTCT
CCACGACTTTTTACCACGCTGCACACATAAATCGATGGAAGTGACGTCGT
ACTAAATGGATGTTTCCGGCGGAAGCGCAGAGAACATGATAAGAGTCTCC
AACAAAAGTTTCAAGATTAGTTTTTGGCATGTTGCATCAGACTGCACCTT
TGGGGAGGGCATTTTGTGGCGCATGCGGAGGCAGGCCGACGCTATATCAA
ATACGCATGAATAGAACGCTAGAATTTTGTGTAGTTAAATCATCTCTTTG
GTGTGGCTCTGACGTATACATGCTCATTCTCCACCATAAACTTCGAAAGA
CTCCCCTGCTCGTCGACCTCCTGTCTCCCCGTCCTCACCTCAACTCAACC
ACCCACATACATCGCAATGTAAACCACACACTACAGATCCAAGAATGGAA
ATCCCCTCGCAAATGGCGGACCCAAATGCCTACCACGTCTTTCCAGGAGA
CGAAGTTGGTGGCGGCTTGGGAAAAGACAAGGATGTAAACCTGGAACCTT
CGGCAGCGGAGCGAGAAAAAGAAGCATACCTCCATCCCTGCTGCCAAAAG
GAGCTAGAGTCTACGCGGGCCCGCACCAAACTTATGACGAAGTTGCGTGC
TGTTGACATCACTCGGCAAGCGATGGATCGGCGGAAGGGTGTGGTGGGGT
TGAGCGAGGAGCAGCACCAGCATGAGCATGGAGCAGGGTGTTGTGCGTTG
ATGGCGGACTACCCGGCCTTGGCTCGCTTGCGGGTAACGAGGGACGGAGG
GGTAGTAACAAGGCAAGACTATGATGACATGGAAAGAAGGAGGAGCAGCA
GCGGCATCAGCAGCAGAGAGGTGGTGGCATCGTATGAAGAGGGCGAGGAC
GAGGAGGACTCCGAGGAAGATGGCGACGACGATATTTTGCGTGAATTGGA
GGCCGGGGACGATGGAGGCTTTCTCGAAATTCGTCGAGCGGAATTGATGC
GCCAGGCTCAAGAAGCGGCTGAAATCCAGTACTTGGGTATCGGGCTGCAC
ACTGAATTACCCCCCAATCGAGTGCTTGACCTTGTATACCTCCGGTGTTG
TCATCTGGTGGTTCATTGCTATGACCCCTATGGAGAGACGAGTGCCGTGT
TGGACTTACAATTGGAAGGGTTGGCAAAGATGTATCCAGGGACGCGGTTT
GTTCGGACGCCCTTTGGGGGAGGAGAAGGCTTGAGGCAAGCGTTACGAGT
GCCTGCCCCGGGGAGTGGGAGTGGTTACACCAAGTCCGTATTGTTGAGCT
TGAGGGATGGGTCTCTGGTTGATAGTTGCTATGATTATGGGAGAAGGTTT
GGGGAGGGGAGGGAGGGAAGGAGGGAGGGAGGGGAGGTGTACTTGGAGGC
GGTGGAGCAGTGGTTGAGGCATTGCCAAGTGCTGGAGAGGGAGAGGATGG
ATGTGGAGAGGGCTCGGAAAATGAGGTTGTTGTTGAAAGCGCAGATGGGG
AGAAAGGGGGGGAAGGGAGGGAGGACAGGGGTGGGGATGCGGATGGCGAT
TACGGCGGGAGGGCAGGAGAGAGATGAGGAGGTGGAGGATGGGGGGGAGG
ACGAGGACGAGGCCGAGTTTTATGAGTGTGGATTGGAAGGGTGCTACAAG
CCCTTCATTCACTCACATGTGGGGATGGAGGGTATACAAATGCCGAAAGA
ATTTGGCGCGATTGGGGAGCATTGACGTAGGACAAGCAACTCCCACAACA
ACACAAAAGAAGAGGATCTCGGAGCAGTAACGAGTAGGAAATAAGAATAA
AAATATCACACAGTTCTACGGTGTGATCACTTTGGCCTCGG

Coding sequence (CDS) from alignment at scaffold_6:1027911..1029951+

>mRNA_3703 ID=mRNA_3703|Name=jgi.p|Nanoce1779_2|553175|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at scaffold_6:1027911..1029951+ (Nannochloropsis oceanica)
ATGGAAATCCCCTCGCAAATGGCGGACCCAAATGCCTACCACGTCTTTCC
AGGAGACGAAGTTGGTGGCGGCTTGGGAAAAGACAAGGATGTAAACCTGG
AACCTTCGGCAGCGGAGCGAGAAAAAGAAGCATACCTCCATCCCTGCTGC
CAAAAGGAGCTAGAGTCTACGCGGGCCCGCACCAAACTTATGACGAAGTT
GCGTGCTGTTGACATCACTCGGCAAGCGATGGATCGGCGGAAGGGTGTGG
TGGGGTTGAGCGAGGAGCAGCACCAGCATGAGCATGGAGCAGGGTGTTGT
GCGTTGATGGCGGACTACCCGGCCTTGGCTCGCTTGCGGGTAACGAGGGA
CGGAGGGGTAGTAACAAGGCAAGACTATGATGACATGGAAAGAAGGAGGA
GCAGCAGCGGCATCAGCAGCAGAGAGGTGGTGGCATCGTATGAAGAGGGC
GAGGACGAGGAGGACTCCGAGGAAGATGGCGACGACGATATTTTGCGTGA
ATTGGAGGCCGGGGACGATGGAGGCTTTCTCGAAATTCGTCGAGCGGAAT
TGATGCGCCAGGCTCAAGAAGCGGCTGAAATCCAGTACTTGGGTATCGGG
CTGCACACTGAATTACCCCCCAATCGAGTGCTTGACCTTGTATACCTCCG
GTGTTGTCATCTGGTGGTTCATTGCTATGACCCCTATGGAGAGACGAGTG
CCGTGTTGGACTTACAATTGGAAGGGTTGGCAAAGATGTATCCAGGGACG
CGGTTTGTTCGGACGCCCTTTGGGGGAGGAGAAGGCTTGAGGCAAGCGTT
ACGAGTGCCTGCCCCGGGGAGTGGGAGTGGTTACACCAAGTCCGTATTGT
TGAGCTTGAGGGATGGGTCTCTGGTTGATAGTTGCTATGATTATGGGAGA
AGGTTTGGGGAGGGGAGGGAGGGAAGGAGGGAGGGAGGGGAGGTGTACTT
GGAGGCGGTGGAGCAGTGGTTGAGGCATTGCCAAGTGCTGGAGAGGGAGA
GGATGGATGTGGAGAGGGCTCGGAAAATGAGGTTGTTGTTGAAAGCGCAG
ATGGGGAGAAAGGGGGGGAAGGGAGGGAGGACAGGGGTGGGGATGCGGAT
GGCGATTACGGCGGGAGGGCAGGAGAGAGATGAGGAGGTGGAGGATGGGG
GGGAGGACGAGGACGAGGCCGAGTTTTATGAGTGTGGATTGGAAGGGTGC
TACAAGCCCTTCATTCACTCACATGTGGGGATGGAGGGTATACAAATGCC
GAAAGAATTTGGCGCGATTGGGGAGCATTGA

Synonyms

Publications