jgi.p|Nanoce1779_2|564585, mRNA_3701 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564585
Unique NamemRNA_3701
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1068
Alignment locationscaffold_6:1019160..1020927 -

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Properties
Property NameValue
TranscriptId564671
TrackFilteredModels2
ProteinId564585
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:1019160..1020927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564585gene_3701Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564585mRNA_3701-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3701CDS_3701Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3701 ID=mRNA_3701|Name=jgi.p|Nanoce1779_2|564585|organism=Nannochloropsis oceanica|type=mRNA|length=1068bp
ATGGAGGATGCACGGATCGTTGCAGGGGTGGATGCATTGGTTCGTCTGTT
GGATAATTCCTCGTCAGGAGTGTCGGCAGCGGTGGGTCTATGTCTTTCCT
CCTGGCTGGAGCACCGTGTTGATAAAGCCCGAAGGAAGCAGAAGAAAAAA
ACGGACAAGGCTGCCCAGAACACGAAGGGGCCGCAAATATCAACAGCAGC
TGCTCCATTCTTCCCTACTCTTGCTTCAGCCGCCCAACCCAATAAAGGAA
AGGAAGGGAGGGAAGGAAGGGAGGGCAGGGAGGGCACACCTCTGTCATGC
GAAGCCAACTCTGAGAAAGAGGGCCTCAATTCTGTCTCCGAGACCCCCTT
TCCCTCTTCCTCCTCCCCTTCCACCCCAGGTGCCTCGCTGTTAGTGTACG
TTTGTGATAGATGCCAGTCGTTTCCCTTGCCTTCGGGCAGATACCACTGT
CGGGTTTGTCCGGATGTTGATTTGTGTGAAGCGTGTTATAGAGCGATTCA
CATGAAGGGCGGGCGGGAGAAAGAGGGGGAGAAAGAAGGGGAGGAAGTGT
TGGAGGAACATTTTTCGAACCATCGTATGGTCTTCATTGGTGCAAATGGG
GAGGAAGAGAGGAACAGAGAGATGTTGCTGCCCCCCATGGCCTATGAGGA
CGACATAATTCAGGAGATGGAGGAAAAGAAGAAGGAGGAGAAGGGGAAGG
GCAAGAGGGGGGTTAGGAGGGAGGGCCTAAGAGAGAGGAAGAGAGGGACG
ACCCCGCCTTCTTTTGCGGAGAGAAAAGAAACCGCGCAAGAGAAGCAGCA
GAGGAAAGAGAAAGAGGGGAAGGACGGAGGAGAGGAGGAGAAAGGGAAGG
ATGCCGGGAGGGGCAGATGGACGGAGTTAAAGAGATGGCAGATGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAACA
GTTGGTGCAGGAGCAGGAGCTATTGACTGGAGCACCCTCTGGCCGCAGCC
AGGCCTCAAAACGACGATGGGGCAGCAGAAGCGACAGAATGAGCAATTTC
TCGCCCTGCTTTGCGTGA
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protein sequence of jgi.p|Nanoce1779_2|564585

>mRNA_3701-protein ID=mRNA_3701-protein|Name=jgi.p|Nanoce1779_2|564585|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MEDARIVAGVDALVRLLDNSSSGVSAAVGLCLSSWLEHRVDKARRKQKKK
TDKAAQNTKGPQISTAAAPFFPTLASAAQPNKGKEGREGREGREGTPLSC
EANSEKEGLNSVSETPFPSSSSPSTPGASLLVYVCDRCQSFPLPSGRYHC
RVCPDVDLCEACYRAIHMKGGREKEGEKEGEEVLEEHFSNHRMVFIGANG
EEERNREMLLPPMAYEDDIIQEMEEKKKEEKGKGKRGVRREGLRERKRGT
TPPSFAERKETAQEKQQRKEKEGKDGGEEEKGKDAGRGRWTELKRWQMEE
EEEEEEEEEEEEEEEEQLVQEQELLTGAPSGRSQASKRRWGSRSDRMSNF
SPCFA*
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mRNA from alignment at scaffold_6:1019160..1020927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3701 ID=mRNA_3701|Name=jgi.p|Nanoce1779_2|564585|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp|location=Sequence derived from alignment at scaffold_6:1019160..1020927- (Nannochloropsis oceanica)
ATGGAGGATGCACGGATCGTTGCAGGGGTGGATGCATTGGTTCGTCTGTT
GGATAATTCCTCGTCAGGAGTGTCGGCAGCGGTGGGTCTATGTCTTTCCT
CCTGGCTGGAGCACCGTGTTGATAAAGCCCGAAGGAAGCAGAAGAAAAAA
ACGGACAAGGCTGCCCAGAACACGAAGGGGCCGCAAATATCAACAGCAGC
TGCTCCATTCTTCCCTACTCTTGCTTCAGCCGCCCAACCCAATAAAGGAA
AGGAAGGGAGGGAAGGAAGGGAGGGCAGGGAGGGCACACCTCTGTCATGC
GAAGCCAACTCTGAGAAAGAGGGCCTCAATTCTGTCTCCGAGACCCCCTT
TCCCTCTTCCTCCTCCCCTTCCACCCCAGGTGCCTCGCTGTTAGTGTACG
TTTGTGATAGATGCCAGTCGTTTCCCTTGCCTTCGGGCAGATACCACTGT
CGGGTTTGTCCGGATGTTGATTTGTGTGAAGCGTGTTATAGAGCGATTCA
CATGAAGGGCGGGCGGGAGAAAGAGGGGGAGAAAGAAGGGGAGGAAGTGT
TGGAGGAACATTTTTCGAACCATCGTATGGTCTTCATTGGTGCAAATGGG
GAGGAAGAGAGGAACAGAGAGATGTTGCTGCCCCCCATGGCCTATGAGGA
CGACATAATTCAGGAGATGGAGGAAAAGAAGAAGGAGGAGAAGGGGAAGG
GCAAGAGGGGGGTTAGGAGGGAGGGCCTAAGAGAGAGGAAGAGAGGGACG
ACCCCGCCTTCTTTTGCGGAGAGAAAAGAAACCGCGCAAGAGAAGCAGCA
GAGGAAAGAGAAAGAGGGGAAGGACGGAGGAGAGGAGGAGAAAGGGAAGG
ATGGTGATGGCGATGATGATGGTCTGACGCATATATTTAGGGGGGGCTTG
GGGAGGGTGAAGGGGATAGAGGCCGTTTTGTTGGTGCTATTCGATCGATT
GTTGCTTCGATTTCCACGCGTGGTGATCCGAGCTCTGGACAGAGAGGGAG
TGACGGACGGAGTGAAGAAGGGGAAGGATATGGTCTCTACAGAAGAAGCA
TGCATGAATTATATAAATTTGCTTTTGCAGCTTTTGAGAGGGCTGAACAG
CAGCAGCAACAATAGAAGCAAGAACAGCAGCAGCAACAATAGAGGCGAGA
ACAGCAGCAGCAGCAGCAGCAGCAGCAAGATCAAGAGCGATTGCAGCAAG
AGCGGGAGCAGCGACAGAAAGAGCAGCAGCGCTCGAGCGCGGCACCTGGC
GATCACTCTTTCCCTCTACCTCAGCCTTGCGCTCCAAAAACTGACAGGAG
ATGGCAGCAGCAGTTCAAGCAGGAGTAACATTGACACTAGCTTTAGCAAC
CGCAAGCACCTCTCTCGGCCCTCTGCAGCCAGCAAGACCGCCCTTCTCCT
TTCGCGTGCCCTGGCTTGCCTCCTCTCCCCCACGCCCTCCCTCCCCCTCT
TCCCTCATTCTGCTCGATCTCTGATTGCTGCCACTGTCGGTCCTGAGGGT
GCCCAAAAGATCGAGCAACAGATCCGTGGCTTACTCTCTACTTGGCTGGC
AAGCCGGGAGGGGCAGATGGACGGAGTTAAAGAGATGGCAGATGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAACA
GTTGGTGCAGGAGCAGGAGCTATTGACTGGAGCACCCTCTGGCCGCAGCC
AGGCCTCAAAACGACGATGGGGCAGCAGAAGCGACAGAATGAGCAATTTC
TCGCCCTGCTTTGCGTGA
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Coding sequence (CDS) from alignment at scaffold_6:1019160..1020927-

>mRNA_3701 ID=mRNA_3701|Name=jgi.p|Nanoce1779_2|564585|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_6:1019160..1020927- (Nannochloropsis oceanica)
CCGGGAGGGGCAGATGGACGGAGTTAAAGAGATGGCAGATGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAACAGTT
GGTGCAGGAGCAGGAGCTATTGACTGGAGCACCCTCTGGCCGCAGCCAGG
CCTCAAAACGACGATGGGGCAGCAGAAGCGACAGAATGAGCAATTTCTCG
CCCTGCTTTGCGTGAATGGAGGATGCACGGATCGTTGCAGGGGTGGATGC
ATTGGTTCGTCTGTTGGATAATTCCTCGTCAGGAGTGTCGGCAGCGGTGG
GTCTATGTCTTTCCTCCTGGCTGGAGCACCGTGTTGATAAAGCCCGAAGG
AAGCAGAAGAAAAAAACGGACAAGGCTGCCCAGAACACGAAGGGGCCGCA
AATATCAACAGCAGCTGCTCCATTCTTCCCTACTCTTGCTTCAGCCGCCC
AACCCAATAAAGGAAAGGAAGGGAGGGAAGGAAGGGAGGGCAGGGAGGGC
ACACCTCTGTCATGCGAAGCCAACTCTGAGAAAGAGGGCCTCAATTCTGT
CTCCGAGACCCCCTTTCCCTCTTCCTCCTCCCCTTCCACCCCAGGTGCCT
CGCTGTTAGTGTACGTTTGTGATAGATGCCAGTCGTTTCCCTTGCCTTCG
GGCAGATACCACTGTCGGGTTTGTCCGGATGTTGATTTGTGTGAAGCGTG
TTATAGAGCGATTCACATGAAGGGCGGGCGGGAGAAAGAGGGGGAGAAAG
AAGGGGAGGAAGTGTTGGAGGAACATTTTTCGAACCATCGTATGGTCTTC
ATTGGTGCAAATGGGGAGGAAGAGAGGAACAGAGAGATGTTGCTGCCCCC
CATGGCCTATGAGGACGACATAATTCAGGAGATGGAGGAAAAGAAGAAGG
AGGAGAAGGGGAAGGGCAAGAGGGGGGTTAGGAGGGAGGGCCTAAGAGAG
AGGAAGAGAGGGACGACCCCGCCTTCTTTTGCGGAGAGAAAAGAAACCGC
GCAAGAGAAGCAGCAGAGGAAAGAGAAAGAGGGGAAGGACGGAGGAGAGG
AGGAGAAAGGGAAGGATGCCGGGAGGGGCAGATGGACGGAGTTAAAGAGA
TGGCAGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAACAGTTGGTGCAGGAGCAGGAGCTATTGACTGGAGCAC
CCTCTGGCCGCAGCCAGGCCTCAAAACGACGATGGGGCAGCAGAAGCGAC
AGAATGAGCAATTTCTCGCCCTGCTTTGCGTGAATGGAGGATGCACGGAT
CGTTGCAGGGGTGGATGCATTGGTTCGTCTGTTGGATAATTCCTCGTCAG
GAGTGTCGGCAGCGGTGGGTCTATGTCTTTCCTCCTGGCTGGAGCACCGT
GTTGATAAAGCCCGAAGGAAGCAGAAGAAAAAAACGGACAAGGCTGCCCA
GAACACGAAGGGGCCGCAAATATCAACAGCAGCTGCTCCATTCTTCCCTA
CTCTTGCTTCAGCCGCCCAACCCAATAAAGGAAAGGAAGGGAGGGAAGGA
AGGGAGGGCAGGGAGGGCACACCTCTGTCATGCGAAGCCAACTCTGAGAA
AGAGGGCCTCAATTCTGTCTCCGAGACCCCCTTTCCCTCTTCCTCCTCCC
CTTCCACCCCAGGTGCCTCGCTGTTAGTGTACGTTTGTGATAGATGCCAG
TCGTTTCCCTTGCCTTCGGGCAGATACCACTGTCGGGTTTGTCCGGATGT
TGATTTGTGTGAAGCGTGTTATAGAGCGATTCACATGAAGGGCGGGCGGG
AGAAAGAGGGGGAGAAAGAAGGGGAGGAAGTGTTGGAGGAACATTTTTCG
AACCATCGTATGGTCTTCATTGGTGCAAATGGGGAGGAAGAGAGGAACAG
AGAGATGTTGCTGCCCCCCATGGCCTATGAGGACGACATAATTCAGGAGA
TGGAGGAAAAGAAGAAGGAGGAGAAGGGGAAGGGCAAGAGGGGGGTTAGG
AGGGAGGGCCTAAGAGAGAGGAAGAGAGGGACGACCCCGCCTTCTTTTGC
GGAGAGAAAAGAAACCGCGCAAGAGAAGCAGCAGAGGAAAGAGAAAGAGG
GGAAGGACGGAGGAGAGGAGGAGAAAGGGAAGGATG
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Synonyms
Publications