jgi.p|Nanoce1779_2|583103, mRNA_3700 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583103
Unique Name	mRNA_3700
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1541
Alignment location	scaffold_6:1017784..1019324 +

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Properties


Property Name	Value
TranscriptId	583189
Track	FilteredModels2
ProteinId	583103

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1017784..1019324 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583103	gene_3700	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583103	mRNA_3700-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3700	CDS_3700	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1017784..1019324+
coding sequence from alignment at scaffold_6:1017784..1019324+

mRNA sequence

>mRNA_3700 ID=mRNA_3700|Name=jgi.p|Nanoce1779_2|583103|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp
CGCCGCCGCCGCCTCCTCCGCATCATCCTCCTCTTCTGCCTCCTCATCCT
CCTCCTCAATCTCCTGCTGCATCGCCTCATCGTCTTCCTCCCCTCCGTCA
TCCAAGCCCTCCTCACTATCAGACCCATAAGAGTGTCTCGCTCTCCTCCC
CTTATTCCCTTCGGTCCTCCTCCAATTTTTCTTTCTACCACAACTGTTGC
TCGATACTCGCGCGGCAGCAGCTGCAACAGCAGCAACAGGAGCAGCTCGA
ACACGGGTCACACTAAATGATAAACCAACCCGTCGTTGCTCCTCCTCTCC
TTCATCCTCCTCCTCCTCCTTCACTTCATCAAACTCAACCTCCTCCTCCC
TTATCTCGTTCTTTTCCTCCTCCCCCTTCTTCTTCTTCTTCTTCCTGTTC
TTCTTCTTCTGCTGCTGCTTTATCGTCTTTTTTTCCTCCCTTCTGTCGTC
CTTTCCGTCATCGTCATGATCCCCGCCTCTATTTTCAACTCCCTGAGACT
CCTCCTTCTCTCCCTCCTCCTTCTCCTCAGTTGCAATCTCCAGTAGACTT
AATGCCAGCAGCTGTGTTTCGTCCCCTCCCTCTAACGCACACACCACATC
AAAAAGCACACATAAAGGAGGCACGTCCTCCCTTCCTCCATCCCTATCTC
TTTCCTCCTTCTCTTGTATCTCTTCCTCCTTCATATCCTCGTCGTCCTCT
TGCTCCTCAATCGATGCACCTCCAGGTGTAATTGCGGCTGCTGGGAGCAA
CACAGATGAGGAAGGAGAGAAGCAGGAGAAAGGGAAGGAGGGAAGAAGGG
CAAAGGCTTGCCAATTCGCAGGACGCGCTAGAGCAGTCACGAGAAGCCGG
GTGAGGCAACTGTGGATGGACGCCTGTCTTGTGTAAGGTAGGTCTGGCAG
ACACACAAATACACGATTGCTTCTCCTACGCTGCTGCTGTTGCTGTTGCT
GTGGCTGCTGGTGGGCAAGAAGGGAAAAAGGAAGTCCGGTGGCAAAGGAG
AGGGCATGGAGTTCTTGAGTGAAAAAGTAGAAGTCGAGTGTGCGGCGATA
CGATGGGTAGTGGTCTCCATACAAGGCGCGAAGGAGCATTTTGCTGCTGT
TGATGAGAGCAGCAGTGGTAGCAGCAGCTGGAGTAAAGGTGGAAGTGCTG
CTGCTGGTGCTGCTACTCTTTCTTGGAGTGGCGGGTGAGGAGAAGGAGGA
GGACGACGACGAGGGAGGGGAGATATGAGCGTGCAACAGATTGCACAACA
GATGCGGCCAGGATGGATCAAAATCCGAGGACGAGGGCGCGATGGATAAG
GGGGTGGGCCGTTGTGTGCGTTGCACCGCCGCCAACAGGTCCAGAAGAGA
AGCTAGGAGGAGCGGAGATGAGTCTCTCACGCAAAGCAGGGCGAGAAATT
GCTCATTCTGTCGCTTCTGCTGCCCCATCGTCGTTTTGAGGCCTGGCTGC
GGCCAGAGGGTGCTCCAGTCAATAGCTCCTGCTCCTGCACCAACTGTTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC

protein sequence of jgi.p|Nanoce1779_2|583103

>mRNA_3700-protein ID=mRNA_3700-protein|Name=jgi.p|Nanoce1779_2|583103|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MINQPVVAPPLLHPPPPPSLHQTQPPPPLSRSFPPPPSSSSSSCSSSSAA
ALSSFFPPFCRPFRHRHDPRLYFQLPETPPSLPPPSPQLQSPVDLMPAAV
FRPLPLTHTPHQKAHIKEARPPFLHPYLFPPSLVSLPPSYPRRPLAPQSM
HLQV*

mRNA from alignment at scaffold_6:1017784..1019324+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3700 ID=mRNA_3700|Name=jgi.p|Nanoce1779_2|583103|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp|location=Sequence derived from alignment at scaffold_6:1017784..1019324+ (Nannochloropsis oceanica)
CGCCGCCGCCGCCTCCTCCGCATCATCCTCCTCTTCTGCCTCCTCATCCT
CCTCCTCAATCTCCTGCTGCATCGCCTCATCGTCTTCCTCCCCTCCGTCA
TCCAAGCCCTCCTCACTATCAGACCCATAAGAGTGTCTCGCTCTCCTCCC
CTTATTCCCTTCGGTCCTCCTCCAATTTTTCTTTCTACCACAACTGTTGC
TCGATACTCGCGCGGCAGCAGCTGCAACAGCAGCAACAGGAGCAGCTCGA
ACACGGGTCACACTAAATGATAAACCAACCCGTCGTTGCTCCTCCTCTCC
TTCATCCTCCTCCTCCTCCTTCACTTCATCAAACTCAACCTCCTCCTCCC
TTATCTCGTTCTTTTCCTCCTCCCCCTTCTTCTTCTTCTTCTTCCTGTTC
TTCTTCTTCTGCTGCTGCTTTATCGTCTTTTTTTCCTCCCTTCTGTCGTC
CTTTCCGTCATCGTCATGATCCCCGCCTCTATTTTCAACTCCCTGAGACT
CCTCCTTCTCTCCCTCCTCCTTCTCCTCAGTTGCAATCTCCAGTAGACTT
AATGCCAGCAGCTGTGTTTCGTCCCCTCCCTCTAACGCACACACCACATC
AAAAAGCACACATAAAGGAGGCACGTCCTCCCTTCCTCCATCCCTATCTC
TTTCCTCCTTCTCTTGTATCTCTTCCTCCTTCATATCCTCGTCGTCCTCT
TGCTCCTCAATCGATGCACCTCCAGGTGTAATTGCGGCTGCTGGGAGCAA
CACAGATGAGGAAGGAGAGAAGCAGGAGAAAGGGAAGGAGGGAAGAAGGG
CAAAGGCTTGCCAATTCGCAGGACGCGCTAGAGCAGTCACGAGAAGCCGG
GTGAGGCAACTGTGGATGGACGCCTGTCTTGTGTAAGGTAGGTCTGGCAG
ACACACAAATACACGATTGCTTCTCCTACGCTGCTGCTGTTGCTGTTGCT
GTGGCTGCTGGTGGGCAAGAAGGGAAAAAGGAAGTCCGGTGGCAAAGGAG
AGGGCATGGAGTTCTTGAGTGAAAAAGTAGAAGTCGAGTGTGCGGCGATA
CGATGGGTAGTGGTCTCCATACAAGGCGCGAAGGAGCATTTTGCTGCTGT
TGATGAGAGCAGCAGTGGTAGCAGCAGCTGGAGTAAAGGTGGAAGTGCTG
CTGCTGGTGCTGCTACTCTTTCTTGGAGTGGCGGGTGAGGAGAAGGAGGA
GGACGACGACGAGGGAGGGGAGATATGAGCGTGCAACAGATTGCACAACA
GATGCGGCCAGGATGGATCAAAATCCGAGGACGAGGGCGCGATGGATAAG
GGGGTGGGCCGTTGTGTGCGTTGCACCGCCGCCAACAGGTCCAGAAGAGA
AGCTAGGAGGAGCGGAGATGAGTCTCTCACGCAAAGCAGGGCGAGAAATT
GCTCATTCTGTCGCTTCTGCTGCCCCATCGTCGTTTTGAGGCCTGGCTGC
GGCCAGAGGGTGCTCCAGTCAATAGCTCCTGCTCCTGCACCAACTGTTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC

Coding sequence (CDS) from alignment at scaffold_6:1017784..1019324+

>mRNA_3700 ID=mRNA_3700|Name=jgi.p|Nanoce1779_2|583103|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_6:1017784..1019324+ (Nannochloropsis oceanica)
ATGATAAACCAACCCGTCGTTGCTCCTCCTCTCCTTCATCCTCCTCCTCC
TCCTTCACTTCATCAAACTCAACCTCCTCCTCCCTTATCTCGTTCTTTTC
CTCCTCCCCCTTCTTCTTCTTCTTCTTCCTGTTCTTCTTCTTCTGCTGCT
GCTTTATCGTCTTTTTTTCCTCCCTTCTGTCGTCCTTTCCGTCATCGTCA
TGATCCCCGCCTCTATTTTCAACTCCCTGAGACTCCTCCTTCTCTCCCTC
CTCCTTCTCCTCAGTTGCAATCTCCAGTAGACTTAATGCCAGCAGCTGTG
TTTCGTCCCCTCCCTCTAACGCACACACCACATCAAAAAGCACACATAAA
GGAGGCACGTCCTCCCTTCCTCCATCCCTATCTCTTTCCTCCTTCTCTTG
TATCTCTTCCTCCTTCATATCCTCGTCGTCCTCTTGCTCCTCAATCGATG
CACCTCCAGGTGTAA

Synonyms

Publications