jgi.p|Nanoce1779_2|577133, mRNA_370 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577133
Unique NamemRNA_370
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1205
Alignment locationscaffold_3:920916..922120 -

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Properties
Property NameValue
TranscriptId577219
TrackFilteredModels2
ProteinId577133
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:920916..922120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577133gene_370Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577133mRNA_370-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_370CDS_370Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_370 ID=mRNA_370|Name=jgi.p|Nanoce1779_2|577133|organism=Nannochloropsis oceanica|type=mRNA|length=1205bp
ACCCATTCTCTTGCTGTTCGCACTGTTGACATTCACGCTTTGGTATATGA
TCGATTATTTGTTGCTCCTGCGATTCTATCAACGGCCACCTCAACGGGAC
GAGCGCCTGCATCGCCAAATGTGTCAGTGTCTGCCGTATTTACTCTTGTT
GCACTTATCACTTGCCATGTTGATGATGGGCAACGATCAATTGCTCGGCT
CGGGCCATAGTTTCGAAATCCCTAAGGTGACAGAGACCCCTAGTGGCGCT
GATTCCTGGCCGGGCCAAACCCTACCTTCAACATCTGCCTTGGAGCTGCC
CGATCACCGACTCTTAAAGACACTGGTTCGAAGACTGAGCAAACACCACA
CACTACAACTCTTTCTGCTGTGGGTACTGGTAGTAGTGTATGTGGTGGTT
GTAGATTTTCCATCCTTGCCCTCCATAAGTGCTCTGCTTGTTCAGACATA
CTACATGTGTCTCGCGACCTTCTGTGCCGCTTTCGGCAGCATTCGCGGGT
CGTGGGGACTACGACGATAGAGCCGGGTGGGCTTCGATCCCATGTGTTGT
GTTAACGTGCTGCGGGACAATGGTTACACGAAAGTGTTTGAACGTCTCAT
TACTCTAGATCTTGACAAGGAGGTGCTGGCCTTCAGTACCGACCCTGCAA
TTGCTTTTACGGGAAATAATTTGTCCAGCTCCTTGCTTTCATCGTCGAGC
ACATCGCATGAGGGCGCACTGGGGACCTCATGGGAGATCTTGTTCCATGG
CGACGGCACGCCTGAGTTGAAAAAGCCCGCGCAGTAGCTCCAATCCGCGA
AGCAGTCCAGTCCAAGCCAAAGCAAACGCGATGGTTGCGGCATATTTTCT
TTTGAGAATCGAATATGAAAAAAGACGTGGGAAATACTGAAGCAAAACGG
TCTCTGGTCGTACGACTTACGGTGTAATACGAAGTACAAAGAAGCGGTCT
CGACATTTATACGCGAATTTCCCCAATCCCCACCGTCACCGTTGTCCTCT
CTGTTTCCCCTTACTCGTTTGCGTTCCTCTCGACCTTTGTGTGAGTCATA
AGGCTAAAATAAAAAAGACAGTAAAGATACCAACAAATCGTCTGAAATTT
AGAGACTGGTGACGGTTGCTGCTGCATTGTATGGGGAAAATATCAGGTAT
TTACGATAAAGTAGGACACACAATGCGTGATAAAACAGGACACACAATGC
GCTTC
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protein sequence of jgi.p|Nanoce1779_2|577133

>mRNA_370-protein ID=mRNA_370-protein|Name=jgi.p|Nanoce1779_2|577133|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MIDYLLLLRFYQRPPQRDERLHRQMCQCLPYLLLLHLSLAMLMMGNDQLL
GSGHSFEIPKVTETPSGADSWPGQTLPSTSALELPDHRLLKTLVRRLSKH
HTLQLFLLWVLVVVYVVVVDFPSLPSISALLVQTYYMCLATFCAAFGSIR
GSWGLRR*
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mRNA from alignment at scaffold_3:920916..922120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_370 ID=mRNA_370|Name=jgi.p|Nanoce1779_2|577133|organism=Nannochloropsis oceanica|type=mRNA|length=1205bp|location=Sequence derived from alignment at scaffold_3:920916..922120- (Nannochloropsis oceanica)
ACCCATTCTCTTGCTGTTCGCACTGTTGACATTCACGCTTTGGTATATGA
TCGATTATTTGTTGCTCCTGCGATTCTATCAACGGCCACCTCAACGGGAC
GAGCGCCTGCATCGCCAAATGTGTCAGTGTCTGCCGTATTTACTCTTGTT
GCACTTATCACTTGCCATGTTGATGATGGGCAACGATCAATTGCTCGGCT
CGGGCCATAGTTTCGAAATCCCTAAGGTGACAGAGACCCCTAGTGGCGCT
GATTCCTGGCCGGGCCAAACCCTACCTTCAACATCTGCCTTGGAGCTGCC
CGATCACCGACTCTTAAAGACACTGGTTCGAAGACTGAGCAAACACCACA
CACTACAACTCTTTCTGCTGTGGGTACTGGTAGTAGTGTATGTGGTGGTT
GTAGATTTTCCATCCTTGCCCTCCATAAGTGCTCTGCTTGTTCAGACATA
CTACATGTGTCTCGCGACCTTCTGTGCCGCTTTCGGCAGCATTCGCGGGT
CGTGGGGACTACGACGATAGAGCCGGGTGGGCTTCGATCCCATGTGTTGT
GTTAACGTGCTGCGGGACAATGGTTACACGAAAGTGTTTGAACGTCTCAT
TACTCTAGATCTTGACAAGGAGGTGCTGGCCTTCAGTACCGACCCTGCAA
TTGCTTTTACGGGAAATAATTTGTCCAGCTCCTTGCTTTCATCGTCGAGC
ACATCGCATGAGGGCGCACTGGGGACCTCATGGGAGATCTTGTTCCATGG
CGACGGCACGCCTGAGTTGAAAAAGCCCGCGCAGTAGCTCCAATCCGCGA
AGCAGTCCAGTCCAAGCCAAAGCAAACGCGATGGTTGCGGCATATTTTCT
TTTGAGAATCGAATATGAAAAAAGACGTGGGAAATACTGAAGCAAAACGG
TCTCTGGTCGTACGACTTACGGTGTAATACGAAGTACAAAGAAGCGGTCT
CGACATTTATACGCGAATTTCCCCAATCCCCACCGTCACCGTTGTCCTCT
CTGTTTCCCCTTACTCGTTTGCGTTCCTCTCGACCTTTGTGTGAGTCATA
AGGCTAAAATAAAAAAGACAGTAAAGATACCAACAAATCGTCTGAAATTT
AGAGACTGGTGACGGTTGCTGCTGCATTGTATGGGGAAAATATCAGGTAT
TTACGATAAAGTAGGACACACAATGCGTGATAAAACAGGACACACAATGC
GCTTC
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Coding sequence (CDS) from alignment at scaffold_3:920916..922120-

>mRNA_370 ID=mRNA_370|Name=jgi.p|Nanoce1779_2|577133|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_3:920916..922120- (Nannochloropsis oceanica)
ATGATCGATTATTTGTTGCTCCTGCGATTCTATCAACGGCCACCTCAACG
GGACGAGCGCCTGCATCGCCAAATGTGTCAGTGTCTGCCGTATTTACTCT
TGTTGCACTTATCACTTGCCATGTTGATGATGGGCAACGATCAATTGCTC
GGCTCGGGCCATAGTTTCGAAATCCCTAAGGTGACAGAGACCCCTAGTGG
CGCTGATTCCTGGCCGGGCCAAACCCTACCTTCAACATCTGCCTTGGAGC
TGCCCGATCACCGACTCTTAAAGACACTGGTTCGAAGACTGAGCAAACAC
CACACACTACAACTCTTTCTGCTGTGGGTACTGGTAGTAGTGTATGTGGT
GGTTGTAGATTTTCCATCCTTGCCCTCCATAAGTGCTCTGCTTGTTCAGA
CATACTACATGTGTCTCGCGACCTTCTGTGCCGCTTTCGGCAGCATTCGC
GGGTCGTGGGGACTACGACGATAG
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Synonyms
Publications