jgi.p|Nanoce1779_2|583087, mRNA_3697 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583087
Unique Name	mRNA_3697
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1996
Alignment location	scaffold_6:1002436..1004962 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583173
Track	FilteredModels2
ProteinId	583087

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:1002436..1004962 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583087	gene_3697	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583087	mRNA_3697-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3697	CDS_3697	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:1002436..1004962+
coding sequence from alignment at scaffold_6:1002436..1004962+

mRNA sequence

>mRNA_3697 ID=mRNA_3697|Name=jgi.p|Nanoce1779_2|583087|organism=Nannochloropsis oceanica|type=mRNA|length=1996bp
AACCACAGGCAGGCGATCCCAAGAGGCCTGGCCCACCGAGAGTCACTGCT
CAATTTAGTCGGGATCTGCATCTAGCGCCTCTTTCCTCTCTTCTCTTTCG
GTACCATGAATATATCTTGGACCAGCCGCTGCGGGCTGTCCCTCTTTTGG
GCCATGGGGGCCGCAGTGTTGGGTGCGCCGACCGTCTGGGCACAGAGAGG
GCCCTTGGAGGACGGGTTGGGGGCCCGATTTCAGAGCGTGGGTTATGAAA
TCAATCCGAACTCTATTTTTGGCAAGATGAGCACGATGAGTGCTGACATG
AAGCCGGCTGCGGGGGGACGACCCAAGTTTTTCAATGTCTCGGTTGACCA
AGCCAACTACGTGAGCCTTCGGGCCTTTCTCGGCACGCTTCCTGTGAGCG
GAGGCAAGCTTTCAGACCTCATTCGGGATGAAGACGACGGCGACCTCCCC
TCCGTCGAGGCGTACCTGGATACTCTCAGTAAAGGGATCAGGGACAATCT
CGCACAAGGCTTGCGTGGCAAAAGGGCAGCAGCGGTAGAGGTGGGGGCGG
AGGGCGGGCAGAAACAGGGAAGTGGCAATCAGCCTCCGTCTCACCCGTAT
CAACGCAAGTTAAATGTATACGCGAAGGACCAACGGAGTAATTTTGATTG
GGACGTATATCCGGATCGTGTGGTTGGAAAACTGATGTTTCCTGCCTCGT
ATTACTGCACGGGACAGCTGATCGGGAAGCGGTATGTCCTCACGGCCGCT
CACTGTTTCTACTCGTATGGCAGCCAAATCGACGGCAACAACATGTATCA
ATCCCAGTTCCGTGCGGCTTACCACACCAACAAAGCCGGGCAGCACTTTT
ACGCGGCCTCCTCCACATGGGGTCGGTTGTGGTACGGCACAACCTACCCG
GAAGTCTACCGCAACAGTGACTGGGCCATCATCGAGTTGGAAGAGCCGTT
GGGCGAGACGCAAGGGTACGTGGGAATCAATCCCACGGACTTATCGAAGA
AGCTGCCTATGTATAATAAATTCCAATTGATTGGCTATTCCGAGGACGGA
TACAGTCAGACCGCCGGGAAGGACCCGCAGTGCTCGTTGGAAGATGCTTA
CCAGGGGGTGTATTTCCACAATTGCGACTGTGCTGCTGGGGCAAGTGGAG
GTGCGCTTCTCGATGGTAGCTATAATGTCGTGGGGATCAATACAGCGCAC
ATCATGCCATCTAACACCCAGTTGTTGAGGTCCACCGAGTACAATCCCAC
GTACCCTAACATTGCGGTACCTGCATATCAGTTCATGCCAACATATGCAC
ACATCTTGATGCAGATAGATACGGTCTAACGGGAGGACGGGCGGGACAGA
GGGAACTTAGGAGGAGAGGAAAGGAAAGGAGGGGAAGGGATGGCCATGAA
TCTAACTATCTGTACTCTAAATATTGTTTATATTATTTCATATTGGTGTC
CGTGTATAAGTTAATGCAAACGTTTGCATATGATTAAACGTCCAAAGTCG
GTCCGAAGGAGAGGTGGGGGAGGGGGAGTGGGAGGAAGACTTGTGCTGAA
TCGGTTACTCGTATGCAATGGATGCATACGAGTTAGGTGAAAGCGATAAA
AGGAGTGGACGTGGAAAGGGGGATGCAAATTGAAACGGGTAAATGGAGTA
GCGATTTTCGGGAGGGAGTGGATTAAGAAGGGAGGATCAAAAAGAATGTG
CAAAATGGAAGGTACTTTATCCTACATAGGTACAACCAAGAACGTACGAA
CAGAAGGCCACTAGGGTCAGAAACGATGTATATTTAGCGCTCCTTAAGAA
AGTACACTGGCGGAGGGAGACTGAGACAAGAAAAGCAACGCTGTAATCAA
ACAGATGGAGGCGAGTGAGAAAGTCAATTGTGATACGCAGACCGATCGAC
TCAGTCGTGAACCCGTATTTCGGGTTCGGTCTCTATGAATGTCACAAAGA
AAGGGATGAAAACAGAAAGAAAGAATGGACATACCCCATTATCGAA

protein sequence of jgi.p|Nanoce1779_2|583087

>mRNA_3697-protein ID=mRNA_3697-protein|Name=jgi.p|Nanoce1779_2|583087|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MNISWTSRCGLSLFWAMGAAVLGAPTVWAQRGPLEDGLGARFQSVGYEIN
PNSIFGKMSTMSADMKPAAGGRPKFFNVSVDQANYVSLRAFLGTLPVSGG
KLSDLIRDEDDGDLPSVEAYLDTLSKGIRDNLAQGLRGKRAAAVEVGAEG
GQKQGSGNQPPSHPYQRKLNVYAKDQRSNFDWDVYPDRVVGKLMFPASYY
CTGQLIGKRYVLTAAHCFYSYGSQIDGNNMYQSQFRAAYHTNKAGQHFYA
ASSTWGRLWYGTTYPEVYRNSDWAIIELEEPLGETQGYVGINPTDLSKKL
PMYNKFQLIGYSEDGYSQTAGKDPQCSLEDAYQGVYFHNCDCAAGASGGA
LLDGSYNVVGINTAHIMPSNTQLLRSTEYNPTYPNIAVPAYQFMPTYAHI
LMQIDTV*

mRNA from alignment at scaffold_6:1002436..1004962+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3697 ID=mRNA_3697|Name=jgi.p|Nanoce1779_2|583087|organism=Nannochloropsis oceanica|type=mRNA|length=2527bp|location=Sequence derived from alignment at scaffold_6:1002436..1004962+ (Nannochloropsis oceanica)
AACCACAGGCAGGCGATCCCAAGAGGCCTGGCCCACCGAGAGTCACTGCT
CAATTTAGTCGGGATCTGCATCTAGCGCCTCTTTCCTCTCTTCTCTTTCG
GTACCATGAATATATCTTGGACCAGCCGCTGCGGGCTGTCCCTCTTTTGG
GCCATGGGGGCCGCAGTGTTGGGTGCGCCGACCGTCTGGGCACAGAGAGG
GCCCTTGGAGGACGGGTTGGGGGCCCGATTTCAGAGCGTGGGTTATGAAA
TCAATCCGAACTCTATTTTTGGCAAGATGAGCACGATGAGTGCTGACATG
AAGCCGGCTGCGGGGGGACGACCCAAGTTGTAAGTGTATGGGGTAGAAGT
GAGGAGGACAGGGGTAGGCGGGAGTGTATGTGTGGAAATGCTGGTTGCAG
CCACAGTATTTCTCCATCAGCGGCCATTGTTTTCCTCCATCGGCATCTCA
AAGCTGTTACAGGCGCTGTTTATACACAATCGGTCGCCCGGTATGGCTGG
GACCTCTCCTGCTCCTGTGGCAGGCACTGCTGAGGGACTCGCCTATGTAC
CTCCCCCGACCTCTCTCACCCCTCTCACCGGTGTCTTCTGTACTTCCTTA
CCTCATGACTACAGTTTCAATGTCTCGGTTGACCAAGCCAACTACGTGAG
CCTTCGGGCCTTTCTCGGCACGCTTCCTGTGAGCGGAGGCAAGCTTTCAG
ACCTCATTCGGGATGAAGACGACGGCGACCTCCCCTCCGTCGAGGCGTAC
CTGGATACTCTCAGTAAAGGGATCAGGGACAATCTCGCACAAGGCTTGCG
TGGCAAAAGGGCAGCAGCGGTAGAGGTGGGGGCGGAGGGCGGGCAGAAAC
AGGGAAGTGGCAATCAGCCTCCGTCTCACCCGTATCAACGCAAGTTAAAT
GTATACGCGAAGGACCAACGGAGTAATTTTGATTGGGACGTATATCCGGA
TCGTGTGGTTGGAAAACTGATGTTTCCTGCCTCGTATTACTGCACGGGAC
AGCTGATCGGGAAGCGGTTAGTTGCTGGTGGTATTTTGGTCTGCGGTTTC
TTCTTCCTCCCTCCCACCCTCCCTCCCACCCTCCCTCAGTCCCTCAATTC
CTAGGTGGGCCCTTCCCTTCCCAGCTGCTGAGGTCTTTGATCTATTATCA
GCACATTTGTGTAGCAGAGCCATGCAAAAGTCCTCTTACCATCACTTCTT
CCTATCCCTCTCCCTCCTCCCTTCCTCCCCCCCTCCCTCCCTCCCTCCTT
TCCTACGCTCAGGTATGTCCTCACGGCCGCTCACTGTTTCTACTCGTATG
GCAGCCAAATCGACGGCAACAACATGTATCAATCCCAGTTCCGTGCGGCT
TACCACACCAACAAAGCCGGGCAGCACTTTTACGCGGCCTCCTCCACATG
GGGTCGGTTGTGGTACGGCACAACCTACCCGGAAGTCTACCGCAACAGTG
ACTGGGCCATCATCGAGTTGGAAGAGCCGTTGGGCGAGACGCAAGGGTAC
GTGGGAATCAATCCCACGGACTTATCGAAGAAGCTGCCTATGTATAATAA
ATTCCAATTGATTGGCTATTCCGAGGACGGATACAGTCAGACCGCCGGGA
AGGACCCGCAGTGCTCGTTGGAAGATGCTTACCAGGGGGTGTATTTCCAC
AATTGCGACTGTGCTGCTGGGGCAAGTGGAGGTGCGCTTCTCGATGGTAG
CTATAATGTCGTGGGGATCAATACAGCGCACATCATGCCATCTAACACCC
AGTTGTTGAGGTCCACCGAGTACAATCCCACGTACCCTAACATTGCGGTA
CCTGCATATCAGTTCATGCCAACATATGCACACATCTTGATGCAGATAGA
TACGGTCTAACGGGAGGACGGGCGGGACAGAGGGAACTTAGGAGGAGAGG
AAAGGAAAGGAGGGGAAGGGATGGCCATGAATCTAACTATCTGTACTCTA
AATATTGTTTATATTATTTCATATTGGTGTCCGTGTATAAGTTAATGCAA
ACGTTTGCATATGATTAAACGTCCAAAGTCGGTCCGAAGGAGAGGTGGGG
GAGGGGGAGTGGGAGGAAGACTTGTGCTGAATCGGTTACTCGTATGCAAT
GGATGCATACGAGTTAGGTGAAAGCGATAAAAGGAGTGGACGTGGAAAGG
GGGATGCAAATTGAAACGGGTAAATGGAGTAGCGATTTTCGGGAGGGAGT
GGATTAAGAAGGGAGGATCAAAAAGAATGTGCAAAATGGAAGGTACTTTA
TCCTACATAGGTACAACCAAGAACGTACGAACAGAAGGCCACTAGGGTCA
GAAACGATGTATATTTAGCGCTCCTTAAGAAAGTACACTGGCGGAGGGAG
ACTGAGACAAGAAAAGCAACGCTGTAATCAAACAGATGGAGGCGAGTGAG
AAAGTCAATTGTGATACGCAGACCGATCGACTCAGTCGTGAACCCGTATT
TCGGGTTCGGTCTCTATGAATGTCACAAAGAAAGGGATGAAAACAGAAAG
AAAGAATGGACATACCCCATTATCGAA

Coding sequence (CDS) from alignment at scaffold_6:1002436..1004962+

>mRNA_3697 ID=mRNA_3697|Name=jgi.p|Nanoce1779_2|583087|organism=Nannochloropsis oceanica|type=CDS|length=3672bp|location=Sequence derived from alignment at scaffold_6:1002436..1004962+ (Nannochloropsis oceanica)
ATGAATATATCTTGGACCAGCCGCTGCGGGCTGTCCCTCTTTTGGGCCAT
GGGGGCCGCAGTGTTGGGTGCGCCGACCGTCTGGGCACAGAGAGGGCCCT
TGGAGGACGGGTTGGGGGCCCGATTTCAGAGCGTGGGTTATGAAATCAAT
CCGAACTCTATTTTTGGCAAGATGAGCACGATGAGTGCTGACATGAAGCC
GGCTGCGGGGGGACGACCCAAGTTTTTCAATGTCTCGGTTGACCAAGCCA
ACTACGTGAGCCTTCGGGCCTTTCTCGGCACGCTTCCTGTGAGCGGAGGC
AAGCTTTCAGACCTCATTCGGGATGAAGACGACGGCGACCTCCCCTCCGT
CGAGGCGTACCTGGATACTCTCAGTAAAGGGATCAGGGACAATCTCGCAC
AAGGCTTGCGTGGCAAAAGGGCAGCAGCGGTAGAGGTGGGGGCGGAGGGC
GGGCAGAAACAGGGAAGTGGCAATCAGCCTCCGTCTCACCCGTATCAACG
CAAGTTAAATGTATACGCGAAGGACCAACGGAGTAATTTTGATTGGGACG
TATATCCGGATCGTGTGGTTGGAAAACTGATGTTTCCTGCCTCGTATTAC
TGCACGGGACAGCTGATCGGGAAGCGGTATGTCCTCACGGCCGCTCACTG
TTTCTACTCGTATGGCAGCCAAATCGACGGCAACAACATGTATCAATCCC
AGTTCCGTGCGGCTTACCACACCAACAAAGCCGGGCAGCACTTTTACGCG
GCCTCCTCCACATGGGGTCGGTTGTGGTACGGCACAACCTACCCGGAAGT
CTACCGCAACAGTGACTGGGCCATCATCGAGTTGGAAGAGCCGTTGGGCG
AGACGCAAGGGTACGTGGGAATCAATCCCACGGACTTATCGAAGAAGCTG
CCTATGTATAATAAATTCCAATTGATTGGCTATTCCGAGGACGGATACAG
TCAGACCGCCGGGAAGGACCCGCAGTGCTCGTTGGAAGATGCTTACCAGG
GGGTGTATTTCCACAATTGCGACTGTGCTGCTGGGGCAAGTGGAGGTGCG
CTTCTCGATGGTAGCTATAATGTCGTGGGGATCAATACAGCGCACATCAT
GCCATCTAACACCCAGTTGTTGAGGTCCACCGAGTACAATCCCACGTACC
CTAACATTGCGGTACCTGCATATCAGTTCATGCCAACATATGCACACATC
TTGATGCAGATAGATACGGTCTAAATGAATATATCTTGGACCAGCCGCTG
CGGGCTGTCCCTCTTTTGGGCCATGGGGGCCGCAGTGTTGGGTGCGCCGA
CCGTCTGGGCACAGAGAGGGCCCTTGGAGGACGGGTTGGGGGCCCGATTT
CAGAGCGTGGGTTATGAAATCAATCCGAACTCTATTTTTGGCAAGATGAG
CACGATGAGTGCTGACATGAAGCCGGCTGCGGGGGGACGACCCAAGTTTT
TCAATGTCTCGGTTGACCAAGCCAACTACGTGAGCCTTCGGGCCTTTCTC
GGCACGCTTCCTGTGAGCGGAGGCAAGCTTTCAGACCTCATTCGGGATGA
AGACGACGGCGACCTCCCCTCCGTCGAGGCGTACCTGGATACTCTCAGTA
AAGGGATCAGGGACAATCTCGCACAAGGCTTGCGTGGCAAAAGGGCAGCA
GCGGTAGAGGTGGGGGCGGAGGGCGGGCAGAAACAGGGAAGTGGCAATCA
GCCTCCGTCTCACCCGTATCAACGCAAGTTAAATGTATACGCGAAGGACC
AACGGAGTAATTTTGATTGGGACGTATATCCGGATCGTGTGGTTGGAAAA
CTGATGTTTCCTGCCTCGTATTACTGCACGGGACAGCTGATCGGGAAGCG
GTATGTCCTCACGGCCGCTCACTGTTTCTACTCGTATGGCAGCCAAATCG
ACGGCAACAACATGTATCAATCCCAGTTCCGTGCGGCTTACCACACCAAC
AAAGCCGGGCAGCACTTTTACGCGGCCTCCTCCACATGGGGTCGGTTGTG
GTACGGCACAACCTACCCGGAAGTCTACCGCAACAGTGACTGGGCCATCA
TCGAGTTGGAAGAGCCGTTGGGCGAGACGCAAGGGTACGTGGGAATCAAT
CCCACGGACTTATCGAAGAAGCTGCCTATGTATAATAAATTCCAATTGAT
TGGCTATTCCGAGGACGGATACAGTCAGACCGCCGGGAAGGACCCGCAGT
GCTCGTTGGAAGATGCTTACCAGGGGGTGTATTTCCACAATTGCGACTGT
GCTGCTGGGGCAAGTGGAGGTGCGCTTCTCGATGGTAGCTATAATGTCGT
GGGGATCAATACAGCGCACATCATGCCATCTAACACCCAGTTGTTGAGGT
CCACCGAGTACAATCCCACGTACCCTAACATTGCGGTACCTGCATATCAG
TTCATGCCAACATATGCACACATCTTGATGCAGATAGATACGGTCTAAAT
GAATATATCTTGGACCAGCCGCTGCGGGCTGTCCCTCTTTTGGGCCATGG
GGGCCGCAGTGTTGGGTGCGCCGACCGTCTGGGCACAGAGAGGGCCCTTG
GAGGACGGGTTGGGGGCCCGATTTCAGAGCGTGGGTTATGAAATCAATCC
GAACTCTATTTTTGGCAAGATGAGCACGATGAGTGCTGACATGAAGCCGG
CTGCGGGGGGACGACCCAAGTTTTTCAATGTCTCGGTTGACCAAGCCAAC
TACGTGAGCCTTCGGGCCTTTCTCGGCACGCTTCCTGTGAGCGGAGGCAA
GCTTTCAGACCTCATTCGGGATGAAGACGACGGCGACCTCCCCTCCGTCG
AGGCGTACCTGGATACTCTCAGTAAAGGGATCAGGGACAATCTCGCACAA
GGCTTGCGTGGCAAAAGGGCAGCAGCGGTAGAGGTGGGGGCGGAGGGCGG
GCAGAAACAGGGAAGTGGCAATCAGCCTCCGTCTCACCCGTATCAACGCA
AGTTAAATGTATACGCGAAGGACCAACGGAGTAATTTTGATTGGGACGTA
TATCCGGATCGTGTGGTTGGAAAACTGATGTTTCCTGCCTCGTATTACTG
CACGGGACAGCTGATCGGGAAGCGGTATGTCCTCACGGCCGCTCACTGTT
TCTACTCGTATGGCAGCCAAATCGACGGCAACAACATGTATCAATCCCAG
TTCCGTGCGGCTTACCACACCAACAAAGCCGGGCAGCACTTTTACGCGGC
CTCCTCCACATGGGGTCGGTTGTGGTACGGCACAACCTACCCGGAAGTCT
ACCGCAACAGTGACTGGGCCATCATCGAGTTGGAAGAGCCGTTGGGCGAG
ACGCAAGGGTACGTGGGAATCAATCCCACGGACTTATCGAAGAAGCTGCC
TATGTATAATAAATTCCAATTGATTGGCTATTCCGAGGACGGATACAGTC
AGACCGCCGGGAAGGACCCGCAGTGCTCGTTGGAAGATGCTTACCAGGGG
GTGTATTTCCACAATTGCGACTGTGCTGCTGGGGCAAGTGGAGGTGCGCT
TCTCGATGGTAGCTATAATGTCGTGGGGATCAATACAGCGCACATCATGC
CATCTAACACCCAGTTGTTGAGGTCCACCGAGTACAATCCCACGTACCCT
AACATTGCGGTACCTGCATATCAGTTCATGCCAACATATGCACACATCTT
GATGCAGATAGATACGGTCTAA

Synonyms

Publications