jgi.p|Nanoce1779_2|583079, mRNA_3694 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583079
Unique NamemRNA_3694
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1107
Alignment locationscaffold_6:995725..996831 -

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Properties
Property NameValue
TranscriptId583165
TrackFilteredModels2
ProteinId583079
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:995725..996831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583079gene_3694Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583079mRNA_3694-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3694CDS_3694Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3694 ID=mRNA_3694|Name=jgi.p|Nanoce1779_2|583079|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
GGGCAAGTGGGAAGAGCGGACGAAGCCACTGCGCAAGGGAGGGTGAGGAG
AGGAGGTAGGGAGGGCGGGAGGGAGGACGGGGGTTTGTGTCCGGCCACAT
CGCGCGGGACGCAAGCTGGAGTATTTAATTGCTGTTGCCTTTATGGTTGC
TACTGCTTGTCGTTCCCCTTCCAGGCTATGATCTGCGGCAACCAGGATGA
GGGCTGGGCGGATCCGACCGCCGTCAGTGCCTTTGGTAACAGCGACGTAA
CCAAGTAAGGAGGACGCTTCCATATTCTTGAGCCAAAACGCACCTCGGCA
TGAGCAATTAGGGGTGTGGACTTCGATGATTTCGGCTTGTTTGTTGGTTA
TTTTTTGAAGAATGGATAGGTCGGAGAAGAGGCTGGGGTTGGGTTGGGTT
GCCGATGAAGAGGATGAGGAGGAGAGAAATTTGGGTTGTTTTTGGTGGCG
TGGCTTACGGACTTTTGTGGGACCCATACTGCTGTCCGTTGTGGTTGTTG
TGGTGGTGGAGTCGGCAGCGGGGGCGGAAGCGACGGTGGCGGAAGCATCT
GAGGAGAAAGTTGTGGGTCTGCCACTAGGTTTTAATTTCGTTTTGCTCGG
TATCGTTGCCACTGCCGTGGCCGCATCGACTATCATGGTGCAGGAGGCTT
CAAATGAATAGGAGGACATATGCCCCGCAGCAGCTTTGGCGTCATTCGTC
GTCACCGCTTTCTTTGAACCAGCGGCAGACGTCGCAACAAATGCGATTGC
CGCTTTCTTCTTCTCTTTTTGCCGCTGTTTGCGCTCAGCCTTTCCCATGC
CTACAGCAGCGTTGTTGTCGTCGTCGTCCGTCGAAGAGGAGGCAACCTGG
TAGACCTCGTCGTCGTGAAGCGTGAGCGCCGCAAGGCTCTCTTCTACGGA
AGGGGTATCATTACAGACACCATCTCCATCTTTAACTTGTCGCAACCGTG
TAGGTGGTTGTACTATAGAGTTGGGTGGATGGTCGAGGATGCTGGCCATA
CGCCTGCGGGCGGGCAGGCAGTCAGTTGATGGGGTAGGGATGAAGAGGAA
GCGCTTGCTGCGCTGTTGGACGAGGAGGGGGAAAAATCCAAGAGCGCGAG
ACCCTGT
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protein sequence of jgi.p|Nanoce1779_2|583079

>mRNA_3694-protein ID=mRNA_3694-protein|Name=jgi.p|Nanoce1779_2|583079|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MDRSEKRLGLGWVADEEDEEERNLGCFWWRGLRTFVGPILLSVVVVVVVE
SAAGAEATVAEASEEKVVGLPLGFNFVLLGIVATAVAASTIMVQEASN
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mRNA from alignment at scaffold_6:995725..996831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3694 ID=mRNA_3694|Name=jgi.p|Nanoce1779_2|583079|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp|location=Sequence derived from alignment at scaffold_6:995725..996831- (Nannochloropsis oceanica)
GGGCAAGTGGGAAGAGCGGACGAAGCCACTGCGCAAGGGAGGGTGAGGAG
AGGAGGTAGGGAGGGCGGGAGGGAGGACGGGGGTTTGTGTCCGGCCACAT
CGCGCGGGACGCAAGCTGGAGTATTTAATTGCTGTTGCCTTTATGGTTGC
TACTGCTTGTCGTTCCCCTTCCAGGCTATGATCTGCGGCAACCAGGATGA
GGGCTGGGCGGATCCGACCGCCGTCAGTGCCTTTGGTAACAGCGACGTAA
CCAAGTAAGGAGGACGCTTCCATATTCTTGAGCCAAAACGCACCTCGGCA
TGAGCAATTAGGGGTGTGGACTTCGATGATTTCGGCTTGTTTGTTGGTTA
TTTTTTGAAGAATGGATAGGTCGGAGAAGAGGCTGGGGTTGGGTTGGGTT
GCCGATGAAGAGGATGAGGAGGAGAGAAATTTGGGTTGTTTTTGGTGGCG
TGGCTTACGGACTTTTGTGGGACCCATACTGCTGTCCGTTGTGGTTGTTG
TGGTGGTGGAGTCGGCAGCGGGGGCGGAAGCGACGGTGGCGGAAGCATCT
GAGGAGAAAGTTGTGGGTCTGCCACTAGGTTTTAATTTCGTTTTGCTCGG
TATCGTTGCCACTGCCGTGGCCGCATCGACTATCATGGTGCAGGAGGCTT
CAAATGAATAGGAGGACATATGCCCCGCAGCAGCTTTGGCGTCATTCGTC
GTCACCGCTTTCTTTGAACCAGCGGCAGACGTCGCAACAAATGCGATTGC
CGCTTTCTTCTTCTCTTTTTGCCGCTGTTTGCGCTCAGCCTTTCCCATGC
CTACAGCAGCGTTGTTGTCGTCGTCGTCCGTCGAAGAGGAGGCAACCTGG
TAGACCTCGTCGTCGTGAAGCGTGAGCGCCGCAAGGCTCTCTTCTACGGA
AGGGGTATCATTACAGACACCATCTCCATCTTTAACTTGTCGCAACCGTG
TAGGTGGTTGTACTATAGAGTTGGGTGGATGGTCGAGGATGCTGGCCATA
CGCCTGCGGGCGGGCAGGCAGTCAGTTGATGGGGTAGGGATGAAGAGGAA
GCGCTTGCTGCGCTGTTGGACGAGGAGGGGGAAAAATCCAAGAGCGCGAG
ACCCTGT
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Coding sequence (CDS) from alignment at scaffold_6:995725..996831-

>mRNA_3694 ID=mRNA_3694|Name=jgi.p|Nanoce1779_2|583079|organism=Nannochloropsis oceanica|type=CDS|length=296bp|location=Sequence derived from alignment at scaffold_6:995725..996831- (Nannochloropsis oceanica)
ATGGATAGGTCGGAGAAGAGGCTGGGGTTGGGTTGGGTTGCCGATGAAGA
GGATGAGGAGGAGAGAAATTTGGGTTGTTTTTGGTGGCGTGGCTTACGGA
CTTTTGTGGGACCCATACTGCTGTCCGTTGTGGTTGTTGTGGTGGTGGAG
TCGGCAGCGGGGGCGGAAGCGACGGTGGCGGAAGCATCTGAGGAGAAAGT
TGTGGGTCTGCCACTAGGTTTTAATTTCGTTTTGCTCGGTATCGTTGCCA
CTGCCGTGGCCGCATCGACTATCATGGTGCAGGAGGCTTCAAATGA
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Synonyms
Publications