jgi.p|Nanoce1779_2|583073, mRNA_3692 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583073
Unique Name	mRNA_3692
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1504
Alignment location	scaffold_6:988225..989728 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583159
Track	FilteredModels2
ProteinId	583073

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:988225..989728 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583073	gene_3692	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583073	mRNA_3692-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3692	CDS_3692	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:988225..989728+
coding sequence from alignment at scaffold_6:988225..989728+

mRNA sequence

>mRNA_3692 ID=mRNA_3692|Name=jgi.p|Nanoce1779_2|583073|organism=Nannochloropsis oceanica|type=mRNA|length=1504bp
GAGAGGGCAGGGTAGGGGGAAGGGGAGTGGGAATATGAATAATAACAGTC
ATTTGTCTGATTCTGACGATGGGATGGAGAAGGAGGAGAGGCGGCTGGGT
GATCAAGTCTCAACCTTAAAGCGACAGCTCAGTCGAAATGTGCCCACCCT
TCCCTGGAGTGGGAACAATTCTCCGACAAACATTCCAACACCTGCCAACA
TGAAGGATGGAGCTCATCTACAGCTTCACCCTATGCTTCAAAACCCAGCT
GCTTTCCCCGTCCACCTCTCCTCCTCTGCAGCCACGACCCATGACTCATC
GGAAGTTTTTTACGACGACTTCAAGCCATCCGCTGCAGCCGCTGTGGACA
AAAGCAAGGGGAAATGTGGTGGAAAGCAGGAGCTGCAGGTGCCTGCAGAA
GCAGCGGCCGGTGGAGCTGCTGTTGGCGCTGCTGGTGCTGGTAGCAAGGG
GCGTGGAAAAGGAACTGGCAAGAAGAAAGAATTGCAACAGGATAAATCTT
TGGCAGGTGCGACCGTTGCTAGTTTTACTGCTGCTAGCACGACTACTTCT
ATAACCACCACTGGTGCTCATGGGGATGTGGCGAATGCCACGGAGTTTGC
AGTGGACCTGTTTAAGCGACGCTCTTTGTTGATAGCGTGTATGTTGGGCG
TCCTCCTCTTCCTAGGAGGGTTGGGAGGGTTCTTCATCGCTCGATCAACC
TTGTTATCTTCACAAGCTCTGAATGTAGGAGGAATGGGAGGAGCGGAAGG
AGGGGCTCTGCCGTTGACGCAGCAGCAGATGGAAACGTTACTGGAAAAGG
AGAAGCTGAAATGGCAGCAGCAGCAAGAGCAACTACAACAATATGAGCAG
CAACGACAGCAACGAGCTAATCAGGAGCGAGAGGTCCAGGCGAAGGAAGA
GGCAGAAATGGACAAAGACGAGATGGTGGATCTTAGTGGTTTTGGCAGCA
GCCGTAGCAGCAGCAGCAAGATCATGGAAAATGTGGACGCGAGTACGGCA
GTGGTCCGTCATCCTGGTGCATGTAGTTGTGACGGTATTCCTTTGTTTAA
GATTTTGCTCGGTCGCATTGCCAGAACCTTTGGGCGGTTGGTGCGGTTCT
TGGATCGGCATGGGAAGAACAGGGGAAGAGTTAGGCACGGGTGAAGGGAG
CGAAGGAAGGATTGAGGGGAATTCTCACGTAAAGAAATGGATGAGGACGA
GAAGATATTCACATAAGTTTCATATAAATGACAAGATTATAATACTTACA
CGCAAGACGGGGACTGAAAAATCATCTGCTGTCGCTTCTACCACTGTAAA
TGGACATGCTGGTCGAAAGGATGACTGGGCGTTTTGTCTACACAATTTTC
GCTCCCTAAGGCATCGAAATGCACGTGTTATGACCATGCGAAAGAGGAAA
GATGACAACAAAACGAAAGCAAAAAAGTTTTTTTAAAATACAAGCGGAAA
GAAGGGAGAAGCAATCAACAGTCAAAAAGAAGTAGACAATTCCAGCATGT
GGGC

protein sequence of jgi.p|Nanoce1779_2|583073

>mRNA_3692-protein ID=mRNA_3692-protein|Name=jgi.p|Nanoce1779_2|583073|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MNNNSHLSDSDDGMEKEERRLGDQVSTLKRQLSRNVPTLPWSGNNSPTNI
PTPANMKDGAHLQLHPMLQNPAAFPVHLSSSAATTHDSSEVFYDDFKPSA
AAAVDKSKGKCGGKQELQVPAEAAAGGAAVGAAGAGSKGRGKGTGKKKEL
QQDKSLAGATVASFTAASTTTSITTTGAHGDVANATEFAVDLFKRRSLLI
ACMLGVLLFLGGLGGFFIARSTLLSSQALNVGGMGGAEGGALPLTQQQME
TLLEKEKLKWQQQQEQLQQYEQQRQQRANQEREVQAKEEAEMDKDEMVDL
SGFGSSRSSSSKIMENVDASTAVVRHPGACSCDGIPLFKILLGRIARTFG
RLVRFLDRHGKNRGRVRHG*

mRNA from alignment at scaffold_6:988225..989728+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3692 ID=mRNA_3692|Name=jgi.p|Nanoce1779_2|583073|organism=Nannochloropsis oceanica|type=mRNA|length=1504bp|location=Sequence derived from alignment at scaffold_6:988225..989728+ (Nannochloropsis oceanica)
GAGAGGGCAGGGTAGGGGGAAGGGGAGTGGGAATATGAATAATAACAGTC
ATTTGTCTGATTCTGACGATGGGATGGAGAAGGAGGAGAGGCGGCTGGGT
GATCAAGTCTCAACCTTAAAGCGACAGCTCAGTCGAAATGTGCCCACCCT
TCCCTGGAGTGGGAACAATTCTCCGACAAACATTCCAACACCTGCCAACA
TGAAGGATGGAGCTCATCTACAGCTTCACCCTATGCTTCAAAACCCAGCT
GCTTTCCCCGTCCACCTCTCCTCCTCTGCAGCCACGACCCATGACTCATC
GGAAGTTTTTTACGACGACTTCAAGCCATCCGCTGCAGCCGCTGTGGACA
AAAGCAAGGGGAAATGTGGTGGAAAGCAGGAGCTGCAGGTGCCTGCAGAA
GCAGCGGCCGGTGGAGCTGCTGTTGGCGCTGCTGGTGCTGGTAGCAAGGG
GCGTGGAAAAGGAACTGGCAAGAAGAAAGAATTGCAACAGGATAAATCTT
TGGCAGGTGCGACCGTTGCTAGTTTTACTGCTGCTAGCACGACTACTTCT
ATAACCACCACTGGTGCTCATGGGGATGTGGCGAATGCCACGGAGTTTGC
AGTGGACCTGTTTAAGCGACGCTCTTTGTTGATAGCGTGTATGTTGGGCG
TCCTCCTCTTCCTAGGAGGGTTGGGAGGGTTCTTCATCGCTCGATCAACC
TTGTTATCTTCACAAGCTCTGAATGTAGGAGGAATGGGAGGAGCGGAAGG
AGGGGCTCTGCCGTTGACGCAGCAGCAGATGGAAACGTTACTGGAAAAGG
AGAAGCTGAAATGGCAGCAGCAGCAAGAGCAACTACAACAATATGAGCAG
CAACGACAGCAACGAGCTAATCAGGAGCGAGAGGTCCAGGCGAAGGAAGA
GGCAGAAATGGACAAAGACGAGATGGTGGATCTTAGTGGTTTTGGCAGCA
GCCGTAGCAGCAGCAGCAAGATCATGGAAAATGTGGACGCGAGTACGGCA
GTGGTCCGTCATCCTGGTGCATGTAGTTGTGACGGTATTCCTTTGTTTAA
GATTTTGCTCGGTCGCATTGCCAGAACCTTTGGGCGGTTGGTGCGGTTCT
TGGATCGGCATGGGAAGAACAGGGGAAGAGTTAGGCACGGGTGAAGGGAG
CGAAGGAAGGATTGAGGGGAATTCTCACGTAAAGAAATGGATGAGGACGA
GAAGATATTCACATAAGTTTCATATAAATGACAAGATTATAATACTTACA
CGCAAGACGGGGACTGAAAAATCATCTGCTGTCGCTTCTACCACTGTAAA
TGGACATGCTGGTCGAAAGGATGACTGGGCGTTTTGTCTACACAATTTTC
GCTCCCTAAGGCATCGAAATGCACGTGTTATGACCATGCGAAAGAGGAAA
GATGACAACAAAACGAAAGCAAAAAAGTTTTTTTAAAATACAAGCGGAAA
GAAGGGAGAAGCAATCAACAGTCAAAAAGAAGTAGACAATTCCAGCATGT
GGGC

Coding sequence (CDS) from alignment at scaffold_6:988225..989728+

>mRNA_3692 ID=mRNA_3692|Name=jgi.p|Nanoce1779_2|583073|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_6:988225..989728+ (Nannochloropsis oceanica)
ATGAATAATAACAGTCATTTGTCTGATTCTGACGATGGGATGGAGAAGGA
GGAGAGGCGGCTGGGTGATCAAGTCTCAACCTTAAAGCGACAGCTCAGTC
GAAATGTGCCCACCCTTCCCTGGAGTGGGAACAATTCTCCGACAAACATT
CCAACACCTGCCAACATGAAGGATGGAGCTCATCTACAGCTTCACCCTAT
GCTTCAAAACCCAGCTGCTTTCCCCGTCCACCTCTCCTCCTCTGCAGCCA
CGACCCATGACTCATCGGAAGTTTTTTACGACGACTTCAAGCCATCCGCT
GCAGCCGCTGTGGACAAAAGCAAGGGGAAATGTGGTGGAAAGCAGGAGCT
GCAGGTGCCTGCAGAAGCAGCGGCCGGTGGAGCTGCTGTTGGCGCTGCTG
GTGCTGGTAGCAAGGGGCGTGGAAAAGGAACTGGCAAGAAGAAAGAATTG
CAACAGGATAAATCTTTGGCAGGTGCGACCGTTGCTAGTTTTACTGCTGC
TAGCACGACTACTTCTATAACCACCACTGGTGCTCATGGGGATGTGGCGA
ATGCCACGGAGTTTGCAGTGGACCTGTTTAAGCGACGCTCTTTGTTGATA
GCGTGTATGTTGGGCGTCCTCCTCTTCCTAGGAGGGTTGGGAGGGTTCTT
CATCGCTCGATCAACCTTGTTATCTTCACAAGCTCTGAATGTAGGAGGAA
TGGGAGGAGCGGAAGGAGGGGCTCTGCCGTTGACGCAGCAGCAGATGGAA
ACGTTACTGGAAAAGGAGAAGCTGAAATGGCAGCAGCAGCAAGAGCAACT
ACAACAATATGAGCAGCAACGACAGCAACGAGCTAATCAGGAGCGAGAGG
TCCAGGCGAAGGAAGAGGCAGAAATGGACAAAGACGAGATGGTGGATCTT
AGTGGTTTTGGCAGCAGCCGTAGCAGCAGCAGCAAGATCATGGAAAATGT
GGACGCGAGTACGGCAGTGGTCCGTCATCCTGGTGCATGTAGTTGTGACG
GTATTCCTTTGTTTAAGATTTTGCTCGGTCGCATTGCCAGAACCTTTGGG
CGGTTGGTGCGGTTCTTGGATCGGCATGGGAAGAACAGGGGAAGAGTTAG
GCACGGGTGA

Synonyms

Publications