jgi.p|Nanoce1779_2|238094, mRNA_369 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|238094
Unique NamemRNA_369
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length609
Alignment locationscaffold_3:920317..920925 +

Link to JBrowse

Properties
Property NameValue
TranscriptId238180
TrackFilteredModels2
ProteinId238094
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:920317..920925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|238094gene_369Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|238094mRNA_369-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_369CDS_369Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_369 ID=mRNA_369|Name=jgi.p|Nanoce1779_2|238094|organism=Nannochloropsis oceanica|type=mRNA|length=609bp
ATCACGCATAAACGTTCATCTCAAAACTTCTTTTCTTCTCTACCCCTCTT
AACTCTCAAAACTCGGACAAGTGGATCTGGACGCTAGACATTTAATTATA
TAATCCCCTAGAAAGCTACCTAGCTAGCCTTACATGCACGTGTATGTTTG
TATGTAACGATCAGATGTACGTGTATTCCCCGTCACCATTTCATGTACAT
TTATTTATTTGCTTTGGTGTCGATTCATGTTGCACACTTAGATATATATG
TATCACTGTGTTCAGACTTTATTCCGCGTGAGAGGGGACTACGAGAAGAA
GATGATGAAGGGGGAGTAGAAAAATCATTCGTCGTGTCGATTAGACATAA
GAAGAAAAAACGTAACTCGGCAAGTATGCGTGCAACAAGTCAGCCGACCA
TAGGCCCTACGCGTGGACACATGGGGACAAAGGGTCGAAAAGTAAGATCA
GGGAAATCGGGACCAAGAAGACAACAAATCTCTCAAATCGACATAGACGA
CAGGACTCAAGGAATTAAATTTAGTTTCGGGGTCGACAGGTAGTACACAA
ATAAAAAGAAGAGACGACTGAAGAAGAAAAAAAGAAGGCAAAATGATAAG
AAGCGCATT
back to top

protein sequence of jgi.p|Nanoce1779_2|238094

>mRNA_369-protein ID=mRNA_369-protein|Name=jgi.p|Nanoce1779_2|238094|organism=Nannochloropsis oceanica|type=polypeptide|length=117bp
MYIYLFALVSIHVAHLDIYVSLCSDFIPRERGLREEDDEGGVEKSFVVSI
RHKKKKRNSASMRATSQPTIGPTRGHMGTKGRKVRSGKSGPRRQQISQID
IDDRTQGIKFSFGVDR*
back to top

mRNA from alignment at scaffold_3:920317..920925+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_369 ID=mRNA_369|Name=jgi.p|Nanoce1779_2|238094|organism=Nannochloropsis oceanica|type=mRNA|length=609bp|location=Sequence derived from alignment at scaffold_3:920317..920925+ (Nannochloropsis oceanica)
ATCACGCATAAACGTTCATCTCAAAACTTCTTTTCTTCTCTACCCCTCTT
AACTCTCAAAACTCGGACAAGTGGATCTGGACGCTAGACATTTAATTATA
TAATCCCCTAGAAAGCTACCTAGCTAGCCTTACATGCACGTGTATGTTTG
TATGTAACGATCAGATGTACGTGTATTCCCCGTCACCATTTCATGTACAT
TTATTTATTTGCTTTGGTGTCGATTCATGTTGCACACTTAGATATATATG
TATCACTGTGTTCAGACTTTATTCCGCGTGAGAGGGGACTACGAGAAGAA
GATGATGAAGGGGGAGTAGAAAAATCATTCGTCGTGTCGATTAGACATAA
GAAGAAAAAACGTAACTCGGCAAGTATGCGTGCAACAAGTCAGCCGACCA
TAGGCCCTACGCGTGGACACATGGGGACAAAGGGTCGAAAAGTAAGATCA
GGGAAATCGGGACCAAGAAGACAACAAATCTCTCAAATCGACATAGACGA
CAGGACTCAAGGAATTAAATTTAGTTTCGGGGTCGACAGGTAGTACACAA
ATAAAAAGAAGAGACGACTGAAGAAGAAAAAAAGAAGGCAAAATGATAAG
AAGCGCATT
back to top

Coding sequence (CDS) from alignment at scaffold_3:920317..920925+

>mRNA_369 ID=mRNA_369|Name=jgi.p|Nanoce1779_2|238094|organism=Nannochloropsis oceanica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_3:920317..920925+ (Nannochloropsis oceanica)
ATGTACATTTATTTATTTGCTTTGGTGTCGATTCATGTTGCACACTTAGA
TATATATGTATCACTGTGTTCAGACTTTATTCCGCGTGAGAGGGGACTAC
GAGAAGAAGATGATGAAGGGGGAGTAGAAAAATCATTCGTCGTGTCGATT
AGACATAAGAAGAAAAAACGTAACTCGGCAAGTATGCGTGCAACAAGTCA
GCCGACCATAGGCCCTACGCGTGGACACATGGGGACAAAGGGTCGAAAAG
TAAGATCAGGGAAATCGGGACCAAGAAGACAACAAATCTCTCAAATCGAC
ATAGACGACAGGACTCAAGGAATTAAATTTAGTTTCGGGGTCGACAGGTA
G
back to top
Synonyms
Publications