jgi.p|Nanoce1779_2|583045, mRNA_3688 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583045
Unique Name	mRNA_3688
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2818
Alignment location	scaffold_6:965818..968635 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583131
Track	FilteredModels2
ProteinId	583045

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:965818..968635 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583045	gene_3688	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583045	mRNA_3688-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3688	CDS_3688	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:965818..968635+
coding sequence from alignment at scaffold_6:965818..968635+

mRNA sequence

>mRNA_3688 ID=mRNA_3688|Name=jgi.p|Nanoce1779_2|583045|organism=Nannochloropsis oceanica|type=mRNA|length=2818bp
TGGCCCTCGCAGTAAGAAATCCCCTTTTCCTTCCCGACACGAAACCACAG
GTCAATGCATCTTTCAAGATAGCCTCCCCACCCCTTATTCCTACATCACT
CCACCCGCCCTCTACTGTGCTACCATGTCGACGAGGTTTGTCCGCCTCCT
GCTACGGCCAGGTCAATTTCCGCGAGATGTTCTGCTACAATATCCCAGTC
TCCCCCTCTTCTCTCGCTCTCGGACACATATACACACATCCCGCCGTTCC
CATGGCCCAGCTGCTGGTGCTGGTACTGGCCATACTCCTGCTGCGACTGC
CGCCGCTTTCCATGCCTCTGAATATCCCTTGGAAAAGCTGCGGAATGTCG
GTATCATTGCACACATTGACGCTGGCAAGACGACCACGACAGAGCGCATC
CTCTTCCTAGCTGGGGAGACAGGGCATGTGGGGGACGTGGACACAGGCGA
TACCGTCATGGACTTTTTACCGCAAGAACGCGAGCGGGGTATCACCATCC
AATCAGCCGCCATCTCCCTCGATTGGCATGACATCCGGATCAATCTAATT
GATACGCCAGGACACGTTGACTTCACAATGGAGGTCGAACGAGCCGTCCG
TGTGCTCGACGGAGCGGTTGTCGTCCTGGATGCCGTCGCTGGGGTGCAGG
CCCAGACCGAGACCGTCTGGCGACAAGCGAGCAAATACAAGGTACCTGCC
TTGGCATTCATTAACAAAATGGACCGGGAAGGCGCGGATTTCAAGCATGC
CGTCGCTTCATTACGCAAGAGGCTGGGCGCCCCTGCGGTGGCCATACAGA
TGCCGCTCGGCGCAGGAAAGGAATTTGCGGGTGTGATTGATTTATTGACG
ATGGAGCAAGTTTTGTGGGAGCCCGGGAATAACAGTTTTTCTTCGTCTTC
GTCAAATTTGACAGGGAAACGCCCCGCAGTCACCTTGGTACGGCGATCTC
TCGCTGATGCCGACAACAAAAGCGACTTGCAGACAGCAGCAGCAGCAGCC
CGCGCCGCCCTCCTGGAAGCAGTCGCCGAAGTGGATGAATCTTTTATGGA
GACCTACCTCGAAGCCATCGAAAACGACAAAGCGGGTCTGGATTCCATCC
CCCTCCCCCTTCTCCTTTCAGCTCTTCGCCGTGCCTGTGTCGCAGGCCAA
CTCTTGCCCACCCTCTGTGGCGCTTCTCTCAAAGGCCGTGGAGTTGAACC
ACTTCTCGACTCGGTCGTCGCCTTCCTCCCCTCGCCTATCGACCGCCCTC
TCCCTCTTGCTCATCTCTCCAAGCTACATACTGGTGGGACGCACAACACG
CACAAGGGGAAAAATCTGGAGATAAACCCGAGGGACCCTAATTTATGCGC
ATATGCATTCAAGGTCACCCATGACCGACAACGAGGCCTCGTTGTCTTCC
TCCGTCTCTATTCCGGCACTTTATACGCAAAAGAAAACATTCAAAACTCT
ACGCGTGACATTCGAGAACGCCCGTTGCAGCTACTTGAAGTCCGAGCTGA
TGATTTATCACCTGTCGATAAAGTCGGGGCCGGACACACAATAGCAGTAG
TAGGCCTCAAGAACACCTACACTGGTGATACCCTGGTTGCTTACAAAGGC
CCCTTGCACAGTGCAACTCTAGATGGCATTGCTATCCCTGCCCCTGTTTT
TGCCCTCGCCGTCGAGCCGGTGAGTAGCGCCAAGCAACGGGCTTTGGAGG
AGGCACTGGTGGTCTTACAGCGGGAGGATCCAAGTTTGGGGGTGGATCAG
GACGAGGAGAGTGGACAATTGATGCTTAGAGGGGTGGGGGAATTGCATTT
AGAAATCATTTGCGATAAGTTAAGAAGGCAATATGGTGTGGAGGTGGAGA
CGGGGCAGGCGTATGTGGCTTACAGGGAAGGGATTCTTGGAGGGGAGGAG
AGAGTGGGGAGTGGTGGAGGGGAGGGTTTGGAGATGGTGACGACTATGTA
CGATAGGCAGGTGGGGGGACGGAGATTATTTGCAGAATTGCAGTTGCAAT
TAGAACCCTTGTTGTCCTCATCTTCGTCTGCTATCGCCACTGCCCACTTG
GAGACACCTGATTCAGCAGCGGCAGCTAGAGGAGGTAGTGCGGCTCCTCT
TATCCTCTTTTCAGCCGAGGCGGTGGGTGCGCTTAACGCTGAGGAGAAAG
CTTCACTGATTGGTGGCTTGGAGGATGCTTGTCAACGGGGTCCTTTGGCC
GGTTATCCAGTGGCAGGGTTTAATGTCCGAGTGATGGGTGTTACCAAGGA
TGGAGATACAACCCCGGGGGCATTGCGTGCGTGTTCTGTGGCGGCCTTGG
CGGCAAGCATGAAAGCCGCAAGGGCTGTAGTCTTGGAGCCGGTAATGAAA
GTGGAAGTGTACGCTCCCGAGGCGTCGTTTGGGAGCGTTCTATCGGACTT
AACGGTGGCAAGGCGGGGGACGGTGAGGGATGTAGATGGACGTGGGAGAG
GGGACGAGAAGGACACAACGGTCACGGCGGGAAAGCATGTCATTCATGCA
GACGTACCATTAGTGTCATTATTGGGGTATGCGTCTGCGCTGCGCTCTAT
TACACAGGGAGAGGGTGGATTTAGTATGGAGTTTTCGCATTACGCCCCGT
CGACGACGAGTCATCGAGCCGGGGGTGGAGGGGATATTGGAACAGGAGGG
CGATAGGACAGGTGATTGATAGCACAAGAATGTAGTAATAGGTAGAACTG
AGACACTATGGGATGAAAGTACACAACGAAAAGAAAAAACACAAAGCAAA
TGTGCACTGCCTGGGCGGAAGGGTGTCAGAGGGTGGGGAGGGGAGGTCGG
GGCCGTTGGAAAACAGCG

protein sequence of jgi.p|Nanoce1779_2|583045

>mRNA_3688-protein ID=mRNA_3688-protein|Name=jgi.p|Nanoce1779_2|583045|organism=Nannochloropsis oceanica|type=polypeptide|length=844bp
MSTRFVRLLLRPGQFPRDVLLQYPSLPLFSRSRTHIHTSRRSHGPAAGAG
TGHTPAATAAAFHASEYPLEKLRNVGIIAHIDAGKTTTTERILFLAGETG
HVGDVDTGDTVMDFLPQERERGITIQSAAISLDWHDIRINLIDTPGHVDF
TMEVERAVRVLDGAVVVLDAVAGVQAQTETVWRQASKYKVPALAFINKMD
REGADFKHAVASLRKRLGAPAVAIQMPLGAGKEFAGVIDLLTMEQVLWEP
GNNSFSSSSSNLTGKRPAVTLVRRSLADADNKSDLQTAAAAARAALLEAV
AEVDESFMETYLEAIENDKAGLDSIPLPLLLSALRRACVAGQLLPTLCGA
SLKGRGVEPLLDSVVAFLPSPIDRPLPLAHLSKLHTGGTHNTHKGKNLEI
NPRDPNLCAYAFKVTHDRQRGLVVFLRLYSGTLYAKENIQNSTRDIRERP
LQLLEVRADDLSPVDKVGAGHTIAVVGLKNTYTGDTLVAYKGPLHSATLD
GIAIPAPVFALAVEPVSSAKQRALEEALVVLQREDPSLGVDQDEESGQLM
LRGVGELHLEIICDKLRRQYGVEVETGQAYVAYREGILGGEERVGSGGGE
GLEMVTTMYDRQVGGRRLFAELQLQLEPLLSSSSSAIATAHLETPDSAAA
ARGGSAAPLILFSAEAVGALNAEEKASLIGGLEDACQRGPLAGYPVAGFN
VRVMGVTKDGDTTPGALRACSVAALAASMKAARAVVLEPVMKVEVYAPEA
SFGSVLSDLTVARRGTVRDVDGRGRGDEKDTTVTAGKHVIHADVPLVSLL
GYASALRSITQGEGGFSMEFSHYAPSTTSHRAGGGGDIGTGGR*

mRNA from alignment at scaffold_6:965818..968635+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3688 ID=mRNA_3688|Name=jgi.p|Nanoce1779_2|583045|organism=Nannochloropsis oceanica|type=mRNA|length=2818bp|location=Sequence derived from alignment at scaffold_6:965818..968635+ (Nannochloropsis oceanica)
TGGCCCTCGCAGTAAGAAATCCCCTTTTCCTTCCCGACACGAAACCACAG
GTCAATGCATCTTTCAAGATAGCCTCCCCACCCCTTATTCCTACATCACT
CCACCCGCCCTCTACTGTGCTACCATGTCGACGAGGTTTGTCCGCCTCCT
GCTACGGCCAGGTCAATTTCCGCGAGATGTTCTGCTACAATATCCCAGTC
TCCCCCTCTTCTCTCGCTCTCGGACACATATACACACATCCCGCCGTTCC
CATGGCCCAGCTGCTGGTGCTGGTACTGGCCATACTCCTGCTGCGACTGC
CGCCGCTTTCCATGCCTCTGAATATCCCTTGGAAAAGCTGCGGAATGTCG
GTATCATTGCACACATTGACGCTGGCAAGACGACCACGACAGAGCGCATC
CTCTTCCTAGCTGGGGAGACAGGGCATGTGGGGGACGTGGACACAGGCGA
TACCGTCATGGACTTTTTACCGCAAGAACGCGAGCGGGGTATCACCATCC
AATCAGCCGCCATCTCCCTCGATTGGCATGACATCCGGATCAATCTAATT
GATACGCCAGGACACGTTGACTTCACAATGGAGGTCGAACGAGCCGTCCG
TGTGCTCGACGGAGCGGTTGTCGTCCTGGATGCCGTCGCTGGGGTGCAGG
CCCAGACCGAGACCGTCTGGCGACAAGCGAGCAAATACAAGGTACCTGCC
TTGGCATTCATTAACAAAATGGACCGGGAAGGCGCGGATTTCAAGCATGC
CGTCGCTTCATTACGCAAGAGGCTGGGCGCCCCTGCGGTGGCCATACAGA
TGCCGCTCGGCGCAGGAAAGGAATTTGCGGGTGTGATTGATTTATTGACG
ATGGAGCAAGTTTTGTGGGAGCCCGGGAATAACAGTTTTTCTTCGTCTTC
GTCAAATTTGACAGGGAAACGCCCCGCAGTCACCTTGGTACGGCGATCTC
TCGCTGATGCCGACAACAAAAGCGACTTGCAGACAGCAGCAGCAGCAGCC
CGCGCCGCCCTCCTGGAAGCAGTCGCCGAAGTGGATGAATCTTTTATGGA
GACCTACCTCGAAGCCATCGAAAACGACAAAGCGGGTCTGGATTCCATCC
CCCTCCCCCTTCTCCTTTCAGCTCTTCGCCGTGCCTGTGTCGCAGGCCAA
CTCTTGCCCACCCTCTGTGGCGCTTCTCTCAAAGGCCGTGGAGTTGAACC
ACTTCTCGACTCGGTCGTCGCCTTCCTCCCCTCGCCTATCGACCGCCCTC
TCCCTCTTGCTCATCTCTCCAAGCTACATACTGGTGGGACGCACAACACG
CACAAGGGGAAAAATCTGGAGATAAACCCGAGGGACCCTAATTTATGCGC
ATATGCATTCAAGGTCACCCATGACCGACAACGAGGCCTCGTTGTCTTCC
TCCGTCTCTATTCCGGCACTTTATACGCAAAAGAAAACATTCAAAACTCT
ACGCGTGACATTCGAGAACGCCCGTTGCAGCTACTTGAAGTCCGAGCTGA
TGATTTATCACCTGTCGATAAAGTCGGGGCCGGACACACAATAGCAGTAG
TAGGCCTCAAGAACACCTACACTGGTGATACCCTGGTTGCTTACAAAGGC
CCCTTGCACAGTGCAACTCTAGATGGCATTGCTATCCCTGCCCCTGTTTT
TGCCCTCGCCGTCGAGCCGGTGAGTAGCGCCAAGCAACGGGCTTTGGAGG
AGGCACTGGTGGTCTTACAGCGGGAGGATCCAAGTTTGGGGGTGGATCAG
GACGAGGAGAGTGGACAATTGATGCTTAGAGGGGTGGGGGAATTGCATTT
AGAAATCATTTGCGATAAGTTAAGAAGGCAATATGGTGTGGAGGTGGAGA
CGGGGCAGGCGTATGTGGCTTACAGGGAAGGGATTCTTGGAGGGGAGGAG
AGAGTGGGGAGTGGTGGAGGGGAGGGTTTGGAGATGGTGACGACTATGTA
CGATAGGCAGGTGGGGGGACGGAGATTATTTGCAGAATTGCAGTTGCAAT
TAGAACCCTTGTTGTCCTCATCTTCGTCTGCTATCGCCACTGCCCACTTG
GAGACACCTGATTCAGCAGCGGCAGCTAGAGGAGGTAGTGCGGCTCCTCT
TATCCTCTTTTCAGCCGAGGCGGTGGGTGCGCTTAACGCTGAGGAGAAAG
CTTCACTGATTGGTGGCTTGGAGGATGCTTGTCAACGGGGTCCTTTGGCC
GGTTATCCAGTGGCAGGGTTTAATGTCCGAGTGATGGGTGTTACCAAGGA
TGGAGATACAACCCCGGGGGCATTGCGTGCGTGTTCTGTGGCGGCCTTGG
CGGCAAGCATGAAAGCCGCAAGGGCTGTAGTCTTGGAGCCGGTAATGAAA
GTGGAAGTGTACGCTCCCGAGGCGTCGTTTGGGAGCGTTCTATCGGACTT
AACGGTGGCAAGGCGGGGGACGGTGAGGGATGTAGATGGACGTGGGAGAG
GGGACGAGAAGGACACAACGGTCACGGCGGGAAAGCATGTCATTCATGCA
GACGTACCATTAGTGTCATTATTGGGGTATGCGTCTGCGCTGCGCTCTAT
TACACAGGGAGAGGGTGGATTTAGTATGGAGTTTTCGCATTACGCCCCGT
CGACGACGAGTCATCGAGCCGGGGGTGGAGGGGATATTGGAACAGGAGGG
CGATAGGACAGGTGATTGATAGCACAAGAATGTAGTAATAGGTAGAACTG
AGACACTATGGGATGAAAGTACACAACGAAAAGAAAAAACACAAAGCAAA
TGTGCACTGCCTGGGCGGAAGGGTGTCAGAGGGTGGGGAGGGGAGGTCGG
GGCCGTTGGAAAACAGCG

Coding sequence (CDS) from alignment at scaffold_6:965818..968635+

>mRNA_3688 ID=mRNA_3688|Name=jgi.p|Nanoce1779_2|583045|organism=Nannochloropsis oceanica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_6:965818..968635+ (Nannochloropsis oceanica)
ATGTCGACGAGGTTTGTCCGCCTCCTGCTACGGCCAGGTCAATTTCCGCG
AGATGTTCTGCTACAATATCCCAGTCTCCCCCTCTTCTCTCGCTCTCGGA
CACATATACACACATCCCGCCGTTCCCATGGCCCAGCTGCTGGTGCTGGT
ACTGGCCATACTCCTGCTGCGACTGCCGCCGCTTTCCATGCCTCTGAATA
TCCCTTGGAAAAGCTGCGGAATGTCGGTATCATTGCACACATTGACGCTG
GCAAGACGACCACGACAGAGCGCATCCTCTTCCTAGCTGGGGAGACAGGG
CATGTGGGGGACGTGGACACAGGCGATACCGTCATGGACTTTTTACCGCA
AGAACGCGAGCGGGGTATCACCATCCAATCAGCCGCCATCTCCCTCGATT
GGCATGACATCCGGATCAATCTAATTGATACGCCAGGACACGTTGACTTC
ACAATGGAGGTCGAACGAGCCGTCCGTGTGCTCGACGGAGCGGTTGTCGT
CCTGGATGCCGTCGCTGGGGTGCAGGCCCAGACCGAGACCGTCTGGCGAC
AAGCGAGCAAATACAAGGTACCTGCCTTGGCATTCATTAACAAAATGGAC
CGGGAAGGCGCGGATTTCAAGCATGCCGTCGCTTCATTACGCAAGAGGCT
GGGCGCCCCTGCGGTGGCCATACAGATGCCGCTCGGCGCAGGAAAGGAAT
TTGCGGGTGTGATTGATTTATTGACGATGGAGCAAGTTTTGTGGGAGCCC
GGGAATAACAGTTTTTCTTCGTCTTCGTCAAATTTGACAGGGAAACGCCC
CGCAGTCACCTTGGTACGGCGATCTCTCGCTGATGCCGACAACAAAAGCG
ACTTGCAGACAGCAGCAGCAGCAGCCCGCGCCGCCCTCCTGGAAGCAGTC
GCCGAAGTGGATGAATCTTTTATGGAGACCTACCTCGAAGCCATCGAAAA
CGACAAAGCGGGTCTGGATTCCATCCCCCTCCCCCTTCTCCTTTCAGCTC
TTCGCCGTGCCTGTGTCGCAGGCCAACTCTTGCCCACCCTCTGTGGCGCT
TCTCTCAAAGGCCGTGGAGTTGAACCACTTCTCGACTCGGTCGTCGCCTT
CCTCCCCTCGCCTATCGACCGCCCTCTCCCTCTTGCTCATCTCTCCAAGC
TACATACTGGTGGGACGCACAACACGCACAAGGGGAAAAATCTGGAGATA
AACCCGAGGGACCCTAATTTATGCGCATATGCATTCAAGGTCACCCATGA
CCGACAACGAGGCCTCGTTGTCTTCCTCCGTCTCTATTCCGGCACTTTAT
ACGCAAAAGAAAACATTCAAAACTCTACGCGTGACATTCGAGAACGCCCG
TTGCAGCTACTTGAAGTCCGAGCTGATGATTTATCACCTGTCGATAAAGT
CGGGGCCGGACACACAATAGCAGTAGTAGGCCTCAAGAACACCTACACTG
GTGATACCCTGGTTGCTTACAAAGGCCCCTTGCACAGTGCAACTCTAGAT
GGCATTGCTATCCCTGCCCCTGTTTTTGCCCTCGCCGTCGAGCCGGTGAG
TAGCGCCAAGCAACGGGCTTTGGAGGAGGCACTGGTGGTCTTACAGCGGG
AGGATCCAAGTTTGGGGGTGGATCAGGACGAGGAGAGTGGACAATTGATG
CTTAGAGGGGTGGGGGAATTGCATTTAGAAATCATTTGCGATAAGTTAAG
AAGGCAATATGGTGTGGAGGTGGAGACGGGGCAGGCGTATGTGGCTTACA
GGGAAGGGATTCTTGGAGGGGAGGAGAGAGTGGGGAGTGGTGGAGGGGAG
GGTTTGGAGATGGTGACGACTATGTACGATAGGCAGGTGGGGGGACGGAG
ATTATTTGCAGAATTGCAGTTGCAATTAGAACCCTTGTTGTCCTCATCTT
CGTCTGCTATCGCCACTGCCCACTTGGAGACACCTGATTCAGCAGCGGCA
GCTAGAGGAGGTAGTGCGGCTCCTCTTATCCTCTTTTCAGCCGAGGCGGT
GGGTGCGCTTAACGCTGAGGAGAAAGCTTCACTGATTGGTGGCTTGGAGG
ATGCTTGTCAACGGGGTCCTTTGGCCGGTTATCCAGTGGCAGGGTTTAAT
GTCCGAGTGATGGGTGTTACCAAGGATGGAGATACAACCCCGGGGGCATT
GCGTGCGTGTTCTGTGGCGGCCTTGGCGGCAAGCATGAAAGCCGCAAGGG
CTGTAGTCTTGGAGCCGGTAATGAAAGTGGAAGTGTACGCTCCCGAGGCG
TCGTTTGGGAGCGTTCTATCGGACTTAACGGTGGCAAGGCGGGGGACGGT
GAGGGATGTAGATGGACGTGGGAGAGGGGACGAGAAGGACACAACGGTCA
CGGCGGGAAAGCATGTCATTCATGCAGACGTACCATTAGTGTCATTATTG
GGGTATGCGTCTGCGCTGCGCTCTATTACACAGGGAGAGGGTGGATTTAG
TATGGAGTTTTCGCATTACGCCCCGTCGACGACGAGTCATCGAGCCGGGG
GTGGAGGGGATATTGGAACAGGAGGGCGATAG

Synonyms

Publications