jgi.p|Nanoce1779_2|583033, mRNA_3684 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583033
Unique NamemRNA_3684
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1219
Alignment locationscaffold_6:956546..957764 -

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Properties
Property NameValue
TranscriptId583119
TrackFilteredModels2
ProteinId583033
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:956546..957764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583033gene_3684Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583033mRNA_3684-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3684CDS_3684Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3684 ID=mRNA_3684|Name=jgi.p|Nanoce1779_2|583033|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp
TATTCTTTTATCTTTAGACACAAAGATGAAGGTTATTGCCCTCTTGTCCC
TGGCCTCGGTAGCGAGCGCCTTCATTGCCCCTGCGCCCCTGGCCCGCCGT
GCCTCCCGCTCTGTGCGCATGGCCGCCGACGACGACCTCTCCGTCGCCCT
GCCTTTCGACAAGCGCCCCCCTAACCTGGATGGTAGCCTTGCCGGTGATG
TTGGATTTGACCCGGTGGGTTTCTCCAACAATCCCCCCCGCCCTTGGTTG
ATTGGCGGCTCTGGCCGTTCCCTCAAGTGGTACCGCGAGGCAGAGATCGT
CCACGGCCGCGTGGCCATGCTTGCCGCCCTCGGATGGGTTTTCCCCAACA
TCTACCACTTGCCCGGTAATGAGGATGTGGGCGTAGATGCCTTTGCAAAT
GTGAACCCCCTGGGCGCCTTGACCACAGTCCCGTCCGCGGGCCTCTGGCA
GATTGCGGCCACCGTCACTGCCATTGAGCTTTTCCGCATCAACCGCGTCA
TTCGTGGAGATAAGGAGGCAGGGGACCTCGGCCTCGGCCAAGGTGAGGGA
CGTTGGAACCCGTTTGGCTTCAACTATTCGGAGGAGGAGTACGCCGAGAA
GCAGTTGCAGGAGATCAAGAATGGCCGACTGGCCATGGTGGGCATCCTCG
GCCTCCTCCTCCAGGCGTCGGTGACGGGCAAGGGGATCGTCCAACAGCTC
GGCGGCTCGTTCGACGTGCCCGAGGCTGTTTCTAAGGCTGGAAACTACTT
CCCGGACGGCGTCTAAACGCTTTTTTTTTCATAGGAGAGAAGGCACAGGC
ATCCATGCGCTGTCTCACATCACACACCTACCACACATGTTCTTGTTCCA
TCTTGATGTATTAAAAGAAAAAGATCCAAAGCGAGAGAGGGATGAGGCAT
GAATTATTATTTGTCTGTGTTTGACTATGTGATTGTTCGGTTGTGTGTGT
GTGTGTCCTCTCTCAGACAGGTCCCCAAATGAAAGAAGCTAGGTAGGCAG
TCGCAAGAGTAACCACAGATAATACAATCGAAACGACCGTCCCTTAAGAG
GAGAAGCCAGAGAAAAGAGAAGTAATGAGGAAGCACGACTTTTCCTGTCC
TTGGACTTACGCTGGGGTTGAGATCGTGGAGGTTGGATTGAGGGAGGGAG
GGATGGCAAGGGTCCTGTTTTGCCTCAGACCACAGCAAAGAAGAACCACT
TGCCGTGCGGGAGTTTCCA
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protein sequence of jgi.p|Nanoce1779_2|583033

>mRNA_3684-protein ID=mRNA_3684-protein|Name=jgi.p|Nanoce1779_2|583033|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MKVIALLSLASVASAFIAPAPLARRASRSVRMAADDDLSVALPFDKRPPN
LDGSLAGDVGFDPVGFSNNPPRPWLIGGSGRSLKWYREAEIVHGRVAMLA
ALGWVFPNIYHLPGNEDVGVDAFANVNPLGALTTVPSAGLWQIAATVTAI
ELFRINRVIRGDKEAGDLGLGQGEGRWNPFGFNYSEEEYAEKQLQEIKNG
RLAMVGILGLLLQASVTGKGIVQQLGGSFDVPEAVSKAGNYFPDGV*
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mRNA from alignment at scaffold_6:956546..957764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3684 ID=mRNA_3684|Name=jgi.p|Nanoce1779_2|583033|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp|location=Sequence derived from alignment at scaffold_6:956546..957764- (Nannochloropsis oceanica)
TATTCTTTTATCTTTAGACACAAAGATGAAGGTTATTGCCCTCTTGTCCC
TGGCCTCGGTAGCGAGCGCCTTCATTGCCCCTGCGCCCCTGGCCCGCCGT
GCCTCCCGCTCTGTGCGCATGGCCGCCGACGACGACCTCTCCGTCGCCCT
GCCTTTCGACAAGCGCCCCCCTAACCTGGATGGTAGCCTTGCCGGTGATG
TTGGATTTGACCCGGTGGGTTTCTCCAACAATCCCCCCCGCCCTTGGTTG
ATTGGCGGCTCTGGCCGTTCCCTCAAGTGGTACCGCGAGGCAGAGATCGT
CCACGGCCGCGTGGCCATGCTTGCCGCCCTCGGATGGGTTTTCCCCAACA
TCTACCACTTGCCCGGTAATGAGGATGTGGGCGTAGATGCCTTTGCAAAT
GTGAACCCCCTGGGCGCCTTGACCACAGTCCCGTCCGCGGGCCTCTGGCA
GATTGCGGCCACCGTCACTGCCATTGAGCTTTTCCGCATCAACCGCGTCA
TTCGTGGAGATAAGGAGGCAGGGGACCTCGGCCTCGGCCAAGGTGAGGGA
CGTTGGAACCCGTTTGGCTTCAACTATTCGGAGGAGGAGTACGCCGAGAA
GCAGTTGCAGGAGATCAAGAATGGCCGACTGGCCATGGTGGGCATCCTCG
GCCTCCTCCTCCAGGCGTCGGTGACGGGCAAGGGGATCGTCCAACAGCTC
GGCGGCTCGTTCGACGTGCCCGAGGCTGTTTCTAAGGCTGGAAACTACTT
CCCGGACGGCGTCTAAACGCTTTTTTTTTCATAGGAGAGAAGGCACAGGC
ATCCATGCGCTGTCTCACATCACACACCTACCACACATGTTCTTGTTCCA
TCTTGATGTATTAAAAGAAAAAGATCCAAAGCGAGAGAGGGATGAGGCAT
GAATTATTATTTGTCTGTGTTTGACTATGTGATTGTTCGGTTGTGTGTGT
GTGTGTCCTCTCTCAGACAGGTCCCCAAATGAAAGAAGCTAGGTAGGCAG
TCGCAAGAGTAACCACAGATAATACAATCGAAACGACCGTCCCTTAAGAG
GAGAAGCCAGAGAAAAGAGAAGTAATGAGGAAGCACGACTTTTCCTGTCC
TTGGACTTACGCTGGGGTTGAGATCGTGGAGGTTGGATTGAGGGAGGGAG
GGATGGCAAGGGTCCTGTTTTGCCTCAGACCACAGCAAAGAAGAACCACT
TGCCGTGCGGGAGTTTCCA
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Coding sequence (CDS) from alignment at scaffold_6:956546..957764-

>mRNA_3684 ID=mRNA_3684|Name=jgi.p|Nanoce1779_2|583033|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_6:956546..957764- (Nannochloropsis oceanica)
ATGAAGGTTATTGCCCTCTTGTCCCTGGCCTCGGTAGCGAGCGCCTTCAT
TGCCCCTGCGCCCCTGGCCCGCCGTGCCTCCCGCTCTGTGCGCATGGCCG
CCGACGACGACCTCTCCGTCGCCCTGCCTTTCGACAAGCGCCCCCCTAAC
CTGGATGGTAGCCTTGCCGGTGATGTTGGATTTGACCCGGTGGGTTTCTC
CAACAATCCCCCCCGCCCTTGGTTGATTGGCGGCTCTGGCCGTTCCCTCA
AGTGGTACCGCGAGGCAGAGATCGTCCACGGCCGCGTGGCCATGCTTGCC
GCCCTCGGATGGGTTTTCCCCAACATCTACCACTTGCCCGGTAATGAGGA
TGTGGGCGTAGATGCCTTTGCAAATGTGAACCCCCTGGGCGCCTTGACCA
CAGTCCCGTCCGCGGGCCTCTGGCAGATTGCGGCCACCGTCACTGCCATT
GAGCTTTTCCGCATCAACCGCGTCATTCGTGGAGATAAGGAGGCAGGGGA
CCTCGGCCTCGGCCAAGGTGAGGGACGTTGGAACCCGTTTGGCTTCAACT
ATTCGGAGGAGGAGTACGCCGAGAAGCAGTTGCAGGAGATCAAGAATGGC
CGACTGGCCATGGTGGGCATCCTCGGCCTCCTCCTCCAGGCGTCGGTGAC
GGGCAAGGGGATCGTCCAACAGCTCGGCGGCTCGTTCGACGTGCCCGAGG
CTGTTTCTAAGGCTGGAAACTACTTCCCGGACGGCGTCTAA
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Synonyms
Publications