jgi.p|Nanoce1779_2|583027, mRNA_3683 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583027
Unique Name	mRNA_3683
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1149
Alignment location	scaffold_6:954255..955938 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583113
Track	FilteredModels2
ProteinId	583027

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:954255..955938 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583027	gene_3683	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583027	mRNA_3683-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3683	CDS_3683	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:954255..955938-
coding sequence from alignment at scaffold_6:954255..955938-

mRNA sequence

>mRNA_3683 ID=mRNA_3683|Name=jgi.p|Nanoce1779_2|583027|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp
GGACGATGAACGCGGCGAAGAAGTTCGCGGAGAACCTAGGCAGCAAGATT
CCAAAGGGGGCAGGCATGGGTGGGGGAGGTGGTGGCGGTGGTGGAAGTGG
AGGACCGGCAGGTATCAGTCCGGCGGGGCCGATTGGGGCTTTACTGGGGT
TGGGAGTGGTGGCGTACGCGGGCTACAACAGTTTTTACACTGTGGAGGGT
GGGCACCGTGCACTGTTGTTCAACAGACTACTGGGTGTGAAGGAGGAAGT
TTATATTGAGGGCATGCACATCATGATCCCTTGGTTTGAGATGCCCGTGA
TTTATGACATCAGACCTAAGCCGCGGATGATTCAGTCCTTGACGGGCAGC
AAAGACATGCAAATGGTGAACATCACCATCCGTGTGCTCTCCAAGCCTGA
CGCTTCCCAGCTCCGATGGATCTTTCGTACCCTTGGCAAGGACTATGATG
AGCGCGTCCTGCCTTCGATCGTCAACGAGGTGTCAAAGGCAGTGGTTGCT
AAGTACAATGCCGCCGAGCTGCTAACGAAGCGAGAGATGGTCTCATCTCA
AATTCGATTGCAGTTGGAAAAGCGGGCGAAAGAGTTCCGGATCGTGTTGG
ACGATGTATCTATCACGCACTTGACTTTCTCGAGGGAGTATACCAATGCC
GTGGAGGCGAAGCAAGTCGCGCAACAGGAGGCCGAACGCGCCAAGTATGT
GGTGATGAAGGCGAACCAGGAGAAGGAAGCTATCATCATTAAGGCCGAAG
GTGAGGCTCAATCTGCAGCCCTGGTCGGGAAGGCCATCCGTGAGAACCCT
GCGTTTATCAAGCTCCGCAAAATTGATGCGGCGAGGGACATTGCGAATGT
AGTGTCGGCGTCCGGACAGAAGGTGTACCTTTCGGCAGACTCATTGTTGT
TGAACATGTACACCGGGGATGAGGAGAAGGGGGCTAAGAGGCGGTAGATG
GGAATACAAAAAGGAAGGAGGGAAAGAGAAGGCAAAGACTCGATTTTTCG
GTGGTAGGCTTGTTTGTGATTGTACGACGGTGGGGTGGAGGGTTGTGATC
GGAGAAGCCGTTGAGCATGCCCACGAAATGCTTCCAAAAAAGTGACGCTG
CGAACTGCCACACAAAAAAGAAAGAAAGGAAGGTCGAAGATCGATGACA

protein sequence of jgi.p|Nanoce1779_2|583027

>mRNA_3683-protein ID=mRNA_3683-protein|Name=jgi.p|Nanoce1779_2|583027|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MNAAKKFAENLGSKIPKGAGMGGGGGGGGGSGGPAGISPAGPIGALLGLG
VVAYAGYNSFYTVEGGHRALLFNRLLGVKEEVYIEGMHIMIPWFEMPVIY
DIRPKPRMIQSLTGSKDMQMVNITIRVLSKPDASQLRWIFRTLGKDYDER
VLPSIVNEVSKAVVAKYNAAELLTKREMVSSQIRLQLEKRAKEFRIVLDD
VSITHLTFSREYTNAVEAKQVAQQEAERAKYVVMKANQEKEAIIIKAEGE
AQSAALVGKAIRENPAFIKLRKIDAARDIANVVSASGQKVYLSADSLLLN
MYTGDEEKGAKRR*

mRNA from alignment at scaffold_6:954255..955938-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3683 ID=mRNA_3683|Name=jgi.p|Nanoce1779_2|583027|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp|location=Sequence derived from alignment at scaffold_6:954255..955938- (Nannochloropsis oceanica)
GGACGATGAACGCGGCGAAGAAGTTCGCGGAGAACCTAGGCAGCAAGATT
CCAAAGGGTATGTGTTATGGATGGGGTGGAGTGAGTGGATGGATGCATGC
TGGCTGAGGACAAGACTGAGGAAGGGATGCGGCCTCATCGCTTACAATGT
ATGCTATGCATCGCAAAATCTCACTTATACACAACCGACAATTAAAAAAC
AGGGGCAGGCATGGGTGGGGGAGGTGGTGGCGGTGGTGGAAGTGGAGGAC
CGGCAGGTATCAGTCCGGCGGGGCCGATTGGGGCTTTACTGGGGTTGGGA
GTGGTGGCGTACGCGGGCTACAACAGTTTTTACACTGTGGAGGGTGGGCA
CCGTGCACTGTTGTTCAACAGACTACTGGGTGTGAAGGAGGAAGTTTATA
TTGAGGGCATGCACATCATGATCCCTTGGTTTGAGATGCCCGTGATTTAT
GACATCAGACCTAAGCCGCGGATGATTCAGTCCTTGACGGGCAGCAAAGG
TAAGGGAAGGACATGGGGACAGAAGGGAGGCCGAGCTAGAGAGACGTAAG
AATGAGACCCTCTCCGATATGTCATTTGCTTTCGCGCTTGAACAATGCTT
GACCCCTCCAGTGGTTGATGACTTTTCCTCCACCCCTTCCTCCCTCCCTC
CCTACTTCCATCCCTTCAGACATGCAAATGGTGAACATCACCATCCGTGT
GCTCTCCAAGCCTGACGCTTCCCAGCTCCGATGGATCTTTCGTACCCTTG
GCAAGGACTATGATGAGCGCGTCCTGCCTTCGATCGTCAACGAGGTGTCA
AAGGCAGTGGTTGCTAAGTACAATGCCGCCGAGCTGCTAACGAAGCGAGA
GATGGTCTCATCTCAAATTCGATTGCAGTTGGAAAAGCGGGCGAAAGAGT
TCCGGATCGTGTTGGACGATGTATCTATCACGCACTTGACTTTCTCGAGG
GAGTATACCAATGCCGTGGAGGCGAAGCAAGTCGGTACGTGGGTGTGAAG
GAGGGAGGGAGGGAAGCAGATAGGGAGTGAGGGAAAGGACGTTAGGACGC
CCGTGGCCGGCTACCATTTAGTTACTTGAAAATCACTAACTGCTGCTTTT
TGCTCATTCATTCTTTCACCTCAATGCATACCTGTATTCAATCAATCACC
AATTATCCTTCTCTCATCCCCTTCTTCCTCCCTTTCCTCCCTCCCCCTCT
ACAGCGCAACAGGAGGCCGAACGCGCCAAGTATGTGGTGATGAAGGCGAA
CCAGGAGAAGGAAGCTATCATCATTAAGGCCGAAGGTGAGGCTCAATCTG
CAGCCCTGGTCGGGAAGGCCATCCGTGAGAACCCTGCGTTTATCAAGCTC
CGCAAAATTGATGCGGCGAGGGACATTGCGAATGTAGTGTCGGCGTCCGG
ACAGAAGGTGTACCTTTCGGCAGACTCATTGTTGTTGAACATGTACACCG
GGGATGAGGAGAAGGGGGCTAAGAGGCGGTAGATGGGAATACAAAAAGGA
AGGAGGGAAAGAGAAGGCAAAGACTCGATTTTTCGGTGGTAGGCTTGTTT
GTGATTGTACGACGGTGGGGTGGAGGGTTGTGATCGGAGAAGCCGTTGAG
CATGCCCACGAAATGCTTCCAAAAAAGTGACGCTGCGAACTGCCACACAA
AAAAGAAAGAAAGGAAGGTCGAAGATCGATGACA

Coding sequence (CDS) from alignment at scaffold_6:954255..955938-

>mRNA_3683 ID=mRNA_3683|Name=jgi.p|Nanoce1779_2|583027|organism=Nannochloropsis oceanica|type=CDS|length=3768bp|location=Sequence derived from alignment at scaffold_6:954255..955938- (Nannochloropsis oceanica)
CGCAACAGGAGGCCGAACGCGCCAAGTATGTGGTGATGAAGGCGAACCAG
GAGAAGGAAGCTATCATCATTAAGGCCGAAGGTGAGGCTCAATCTGCAGC
CCTGGTCGGGAAGGCCATCCGTGAGAACCCTGCGTTTATCAAGCTCCGCA
AAATTGATGCGGCGAGGGACATTGCGAATGTAGTGTCGGCGTCCGGACAG
AAGGTGTACCTTTCGGCAGACTCATTGTTGTTGAACATGTACACCGGGGA
TGAGGAGAAGGGGGCTAAGAGGCGGTAGACATGCAAATGGTGAACATCAC
CATCCGTGTGCTCTCCAAGCCTGACGCTTCCCAGCTCCGATGGATCTTTC
GTACCCTTGGCAAGGACTATGATGAGCGCGTCCTGCCTTCGATCGTCAAC
GAGGTGTCAAAGGCAGTGGTTGCTAAGTACAATGCCGCCGAGCTGCTAAC
GAAGCGAGAGATGGTCTCATCTCAAATTCGATTGCAGTTGGAAAAGCGGG
CGAAAGAGTTCCGGATCGTGTTGGACGATGTATCTATCACGCACTTGACT
TTCTCGAGGGAGTATACCAATGCCGTGGAGGCGAAGCAAGTCGGGGCAGG
CATGGGTGGGGGAGGTGGTGGCGGTGGTGGAAGTGGAGGACCGGCAGGTA
TCAGTCCGGCGGGGCCGATTGGGGCTTTACTGGGGTTGGGAGTGGTGGCG
TACGCGGGCTACAACAGTTTTTACACTGTGGAGGGTGGGCACCGTGCACT
GTTGTTCAACAGACTACTGGGTGTGAAGGAGGAAGTTTATATTGAGGGCA
TGCACATCATGATCCCTTGGTTTGAGATGCCCGTGATTTATGACATCAGA
CCTAAGCCGCGGATGATTCAGTCCTTGACGGGCAGCAAAGATGAACGCGG
CGAAGAAGTTCGCGGAGAACCTAGGCAGCAAGATTCCAAAGGCGCAACAG
GAGGCCGAACGCGCCAAGTATGTGGTGATGAAGGCGAACCAGGAGAAGGA
AGCTATCATCATTAAGGCCGAAGGTGAGGCTCAATCTGCAGCCCTGGTCG
GGAAGGCCATCCGTGAGAACCCTGCGTTTATCAAGCTCCGCAAAATTGAT
GCGGCGAGGGACATTGCGAATGTAGTGTCGGCGTCCGGACAGAAGGTGTA
CCTTTCGGCAGACTCATTGTTGTTGAACATGTACACCGGGGATGAGGAGA
AGGGGGCTAAGAGGCGGTAGACATGCAAATGGTGAACATCACCATCCGTG
TGCTCTCCAAGCCTGACGCTTCCCAGCTCCGATGGATCTTTCGTACCCTT
GGCAAGGACTATGATGAGCGCGTCCTGCCTTCGATCGTCAACGAGGTGTC
AAAGGCAGTGGTTGCTAAGTACAATGCCGCCGAGCTGCTAACGAAGCGAG
AGATGGTCTCATCTCAAATTCGATTGCAGTTGGAAAAGCGGGCGAAAGAG
TTCCGGATCGTGTTGGACGATGTATCTATCACGCACTTGACTTTCTCGAG
GGAGTATACCAATGCCGTGGAGGCGAAGCAAGTCGGGGCAGGCATGGGTG
GGGGAGGTGGTGGCGGTGGTGGAAGTGGAGGACCGGCAGGTATCAGTCCG
GCGGGGCCGATTGGGGCTTTACTGGGGTTGGGAGTGGTGGCGTACGCGGG
CTACAACAGTTTTTACACTGTGGAGGGTGGGCACCGTGCACTGTTGTTCA
ACAGACTACTGGGTGTGAAGGAGGAAGTTTATATTGAGGGCATGCACATC
ATGATCCCTTGGTTTGAGATGCCCGTGATTTATGACATCAGACCTAAGCC
GCGGATGATTCAGTCCTTGACGGGCAGCAAAGATGAACGCGGCGAAGAAG
TTCGCGGAGAACCTAGGCAGCAAGATTCCAAAGGCGCAACAGGAGGCCGA
ACGCGCCAAGTATGTGGTGATGAAGGCGAACCAGGAGAAGGAAGCTATCA
TCATTAAGGCCGAAGGTGAGGCTCAATCTGCAGCCCTGGTCGGGAAGGCC
ATCCGTGAGAACCCTGCGTTTATCAAGCTCCGCAAAATTGATGCGGCGAG
GGACATTGCGAATGTAGTGTCGGCGTCCGGACAGAAGGTGTACCTTTCGG
CAGACTCATTGTTGTTGAACATGTACACCGGGGATGAGGAGAAGGGGGCT
AAGAGGCGGTAGACATGCAAATGGTGAACATCACCATCCGTGTGCTCTCC
AAGCCTGACGCTTCCCAGCTCCGATGGATCTTTCGTACCCTTGGCAAGGA
CTATGATGAGCGCGTCCTGCCTTCGATCGTCAACGAGGTGTCAAAGGCAG
TGGTTGCTAAGTACAATGCCGCCGAGCTGCTAACGAAGCGAGAGATGGTC
TCATCTCAAATTCGATTGCAGTTGGAAAAGCGGGCGAAAGAGTTCCGGAT
CGTGTTGGACGATGTATCTATCACGCACTTGACTTTCTCGAGGGAGTATA
CCAATGCCGTGGAGGCGAAGCAAGTCGGGGCAGGCATGGGTGGGGGAGGT
GGTGGCGGTGGTGGAAGTGGAGGACCGGCAGGTATCAGTCCGGCGGGGCC
GATTGGGGCTTTACTGGGGTTGGGAGTGGTGGCGTACGCGGGCTACAACA
GTTTTTACACTGTGGAGGGTGGGCACCGTGCACTGTTGTTCAACAGACTA
CTGGGTGTGAAGGAGGAAGTTTATATTGAGGGCATGCACATCATGATCCC
TTGGTTTGAGATGCCCGTGATTTATGACATCAGACCTAAGCCGCGGATGA
TTCAGTCCTTGACGGGCAGCAAAGATGAACGCGGCGAAGAAGTTCGCGGA
GAACCTAGGCAGCAAGATTCCAAAGGCGCAACAGGAGGCCGAACGCGCCA
AGTATGTGGTGATGAAGGCGAACCAGGAGAAGGAAGCTATCATCATTAAG
GCCGAAGGTGAGGCTCAATCTGCAGCCCTGGTCGGGAAGGCCATCCGTGA
GAACCCTGCGTTTATCAAGCTCCGCAAAATTGATGCGGCGAGGGACATTG
CGAATGTAGTGTCGGCGTCCGGACAGAAGGTGTACCTTTCGGCAGACTCA
TTGTTGTTGAACATGTACACCGGGGATGAGGAGAAGGGGGCTAAGAGGCG
GTAGACATGCAAATGGTGAACATCACCATCCGTGTGCTCTCCAAGCCTGA
CGCTTCCCAGCTCCGATGGATCTTTCGTACCCTTGGCAAGGACTATGATG
AGCGCGTCCTGCCTTCGATCGTCAACGAGGTGTCAAAGGCAGTGGTTGCT
AAGTACAATGCCGCCGAGCTGCTAACGAAGCGAGAGATGGTCTCATCTCA
AATTCGATTGCAGTTGGAAAAGCGGGCGAAAGAGTTCCGGATCGTGTTGG
ACGATGTATCTATCACGCACTTGACTTTCTCGAGGGAGTATACCAATGCC
GTGGAGGCGAAGCAAGTCGGGGCAGGCATGGGTGGGGGAGGTGGTGGCGG
TGGTGGAAGTGGAGGACCGGCAGGTATCAGTCCGGCGGGGCCGATTGGGG
CTTTACTGGGGTTGGGAGTGGTGGCGTACGCGGGCTACAACAGTTTTTAC
ACTGTGGAGGGTGGGCACCGTGCACTGTTGTTCAACAGACTACTGGGTGT
GAAGGAGGAAGTTTATATTGAGGGCATGCACATCATGATCCCTTGGTTTG
AGATGCCCGTGATTTATGACATCAGACCTAAGCCGCGGATGATTCAGTCC
TTGACGGGCAGCAAAGATGAACGCGGCGAAGAAGTTCGCGGAGAACCTAG
GCAGCAAGATTCCAAAGG

Synonyms

Publications