jgi.p|Nanoce1779_2|622873, mRNA_3681 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|622873
Unique NamemRNA_3681
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length603
Alignment locationscaffold_6:949005..950037 +

Link to JBrowse

Properties
Property NameValue
TranscriptId622959
TrackFilteredModels2
ProteinId622873
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:949005..950037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622873gene_3681Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622873mRNA_3681-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3681CDS_3681Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3681 ID=mRNA_3681|Name=jgi.p|Nanoce1779_2|622873|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
ATGCTCACCATGCACGCTATTACAGGTTACACACAAAGTCATGGCGTCGT
ACGGCCAGCAACAGCAACAGCAGCAATGGAGGATTACTCAATGGAGCCGC
CGTTGTTGGAGGAGCTGGGGATTAATTTCAGACACATCGGGGAGAAGACC
AAGACGGTTTTCATGCCGATGAGGTCGATGGATGAACACATTATGGATGA
CGCGGACTTGGCTGGGCCTTTATTCTTCTTATTGTGCTTTGGTATATTTT
TGCTGCTGACGGGCAAAGTCCATTTCGGGTATATATACGGGTTCGGTGTG
TCGGGGTGCTTGGCGATGTACTTGGTGTTAAATTTGCTGAGCGTTAAAGA
AATCGACATCTGGCGTGTCTGCTCTATACTAGGCTACGGTCTGCTGCCTG
TTATCGTCCTCTCCTTTCTCGGAATCGCCGTATCTCTGAAAGGGCCTGTT
GGACAGGGTATCGCTACCTTTACCATCGCTTGGTCCACCTACTCCTCAAC
GCGTCTGTTTGAAAAAGCGTTAAACATGAGCCAGCAAAGATATTTGGTTG
CGTATCCCGTAGCGCTTGTGTATGCAATTTTCGTGTTAATCACTGTCTTT
TGA
back to top

protein sequence of jgi.p|Nanoce1779_2|622873

>mRNA_3681-protein ID=mRNA_3681-protein|Name=jgi.p|Nanoce1779_2|622873|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MLTMHAITGYTQSHGVVRPATATAAMEDYSMEPPLLEELGINFRHIGEKT
KTVFMPMRSMDEHIMDDADLAGPLFFLLCFGIFLLLTGKVHFGYIYGFGV
SGCLAMYLVLNLLSVKEIDIWRVCSILGYGLLPVIVLSFLGIAVSLKGPV
GQGIATFTIAWSTYSSTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF
*
back to top

mRNA from alignment at scaffold_6:949005..950037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3681 ID=mRNA_3681|Name=jgi.p|Nanoce1779_2|622873|organism=Nannochloropsis oceanica|type=mRNA|length=1033bp|location=Sequence derived from alignment at scaffold_6:949005..950037+ (Nannochloropsis oceanica)
ATGCTCACCATGCACGCTATTACAGGTTACACACAAAGTCATGGCGTCGT
ACGGCCAGCAACAGCAACAGCAGCAATGGTACGCAGGCGGGCCCGCTGCA
GGTGCAGCAGGAGCCTACGCTGCGCCGGTAGGCATGACAGGCATCACCCC
AGGGAGCAATTATTACGGGCAAGGCATGACAGGAGGGACCAGCATGAGCG
GAGGAGGAGGGGATGTGGGAGTGGGGCAATGGGGGGGATCTATGGACTCG
GTGGGCGTGGAGGAGGATTACTCAATGGAGCCGCCGTTGTTGGAGGAGCT
GGGGATTAATTTCAGACACATCGGGGAGAAGACCAAGACGGTTTTCATGC
CGATGAGGTCGATGGATGAACACATTATGGATGACGCGGACTTGGCTGGG
CCTTTATTCTTCTTATTGTGCTTTGGTATATTTTTGCTGCTGACGGGCAA
AGTCCATTTCGGGTATATATACGGGTTCGGTGTGTCGGGGTGCTTGGCGA
TGTACTTGGTGTTAAATTTGCTGGTGAGTTGCACGGGAGCGGAGGGAGGG
AGGGAGTGGAAGAGGAAAAGAGGGAGAATAGATTACATACGTTACATCTT
AATCATTTTGCGCCACAATGTCAATAGCCCGTGTCTAAATTACCATGTAT
CCATTAATCTCACCGCTCTCACTCCCCACTTCCTCCCTCTCTCCCTCCCT
CTCTCCCGCCCTCACTCCCTCCCTCCTTTCCCTCCCTACTTCCCTCCCTA
CTTCCCTCCCTTCCCTCAGAGCGTTAAAGAAATCGACATCTGGCGTGTCT
GCTCTATACTAGGCTACGGTCTGCTGCCTGTTATCGTCCTCTCCTTTCTC
GGAATCGCCGTATCTCTGAAAGGGCCTGTTGGACAGGGTATCGCTACCTT
TACCATCGCTTGGTCCACCTACTCCTCAACGCGTCTGTTTGAAAAAGCGT
TAAACATGAGCCAGCAAAGATATTTGGTTGCGTATCCCGTAGCGCTTGTG
TATGCAATTTTCGTGTTAATCACTGTCTTTTGA
back to top

Coding sequence (CDS) from alignment at scaffold_6:949005..950037+

>mRNA_3681 ID=mRNA_3681|Name=jgi.p|Nanoce1779_2|622873|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at scaffold_6:949005..950037+ (Nannochloropsis oceanica)
ATGCTCACCATGCACGCTATTACAGGTTACACACAAAGTCATGGCGTCGT
ACGGCCAGCAACAGCAACAGCAGCAATGGAGGATTACTCAATGGAGCCGC
CGTTGTTGGAGGAGCTGGGGATTAATTTCAGACACATCGGGGAGAAGACC
AAGACGGTTTTCATGCCGATGAGGTCGATGGATGAACACATTATGGATGA
CGCGGACTTGGCTGGGCCTTTATTCTTCTTATTGTGCTTTGGTATATTTT
TGCTGCTGACGGGCAAAGTCCATTTCGGGTATATATACGGGTTCGGTGTG
TCGGGGTGCTTGGCGATGTACTTGGTGTTAAATTTGCTGAGCGTTAAAGA
AATCGACATCTGGCGTGTCTGCTCTATACTAGGCTACGGTCTGCTGCCTG
TTATCGTCCTCTCCTTTCTCGGAATCGCCGTATCTCTGAAAGGGCCTGTT
GGACAGGGTATCGCTACCTTTACCATCGCTTGGTCCACCTACTCCTCAAC
GCGTCTGTTTGAAAAAGCGTTAAACATGAGCCAGCAAAGATATTTGGTTG
CGTATCCCGTAGCGCTTGTGTATGCAATTTTCGTGTTAATCACTGTCTTT
TGAATGCTCACCATGCACGCTATTACAGGTTACACACAAAGTCATGGCGT
CGTACGGCCAGCAACAGCAACAGCAGCAATGGAGGATTACTCAATGGAGC
CGCCGTTGTTGGAGGAGCTGGGGATTAATTTCAGACACATCGGGGAGAAG
ACCAAGACGGTTTTCATGCCGATGAGGTCGATGGATGAACACATTATGGA
TGACGCGGACTTGGCTGGGCCTTTATTCTTCTTATTGTGCTTTGGTATAT
TTTTGCTGCTGACGGGCAAAGTCCATTTCGGGTATATATACGGGTTCGGT
GTGTCGGGGTGCTTGGCGATGTACTTGGTGTTAAATTTGCTGAGCGTTAA
AGAAATCGACATCTGGCGTGTCTGCTCTATACTAGGCTACGGTCTGCTGC
CTGTTATCGTCCTCTCCTTTCTCGGAATCGCCGTATCTCTGAAAGGGCCT
GTTGGACAGGGTATCGCTACCTTTACCATCGCTTGGTCCACCTACTCCTC
AACGCGTCTGTTTGAAAAAGCGTTAAACATGAGCCAGCAAAGATATTTGG
TTGCGTATCCCGTAGCGCTTGTGTATGCAATTTTCGTGTTAATCACTGTC
TTTTGAATGCTCACCATGCACGCTATTACAGGTTACACACAAAGTCATGG
CGTCGTACGGCCAGCAACAGCAACAGCAGCAATGGAGGATTACTCAATGG
AGCCGCCGTTGTTGGAGGAGCTGGGGATTAATTTCAGACACATCGGGGAG
AAGACCAAGACGGTTTTCATGCCGATGAGGTCGATGGATGAACACATTAT
GGATGACGCGGACTTGGCTGGGCCTTTATTCTTCTTATTGTGCTTTGGTA
TATTTTTGCTGCTGACGGGCAAAGTCCATTTCGGGTATATATACGGGTTC
GGTGTGTCGGGGTGCTTGGCGATGTACTTGGTGTTAAATTTGCTGAGCGT
TAAAGAAATCGACATCTGGCGTGTCTGCTCTATACTAGGCTACGGTCTGC
TGCCTGTTATCGTCCTCTCCTTTCTCGGAATCGCCGTATCTCTGAAAGGG
CCTGTTGGACAGGGTATCGCTACCTTTACCATCGCTTGGTCCACCTACTC
CTCAACGCGTCTGTTTGAAAAAGCGTTAAACATGAGCCAGCAAAGATATT
TGGTTGCGTATCCCGTAGCGCTTGTGTATGCAATTTTCGTGTTAATCACT
GTCTTTTGA
back to top
Synonyms
Publications