jgi.p|Nanoce1779_2|583005, mRNA_3679 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583005
Unique NamemRNA_3679
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length962
Alignment locationscaffold_6:943891..945440 +

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Properties
Property NameValue
TranscriptId583091
TrackFilteredModels2
ProteinId583005
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:943891..945440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583005gene_3679Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583005mRNA_3679-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3679CDS_3679Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3679 ID=mRNA_3679|Name=jgi.p|Nanoce1779_2|583005|organism=Nannochloropsis oceanica|type=mRNA|length=962bp
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCACCAC
AGCTGCGGCCAATAGCAGAAGGACAACTGCTCCATCCCTTCCTGGCCTTG
ACTACGCGTGGCGGGGCCTCTCAATCCTCCAGCTTGATGGGACGCATCTT
GCGCGCATGGCGGGGTAGCGCCAAAAATGGCGGAAGCATTTATGGTCGAA
TGAAGCGATTCCTCGGTGCCTTGTGGAATGGAAAGAGAAGTGGTGCAAGC
AACTGTAACACAGGAGGGCGGAGCAATATTCGGAGTGCTGGTGGAGCAGG
GAGAGGGGCGGGCGGAATGGGAAGGAAGCTTGGAAAGAGCAGTCGGGCGG
AGAAGCACTTGGGCACAGAGTTTCGTCGTGGGAATGCCAATTTTCGGATC
CAGAAGGAATTGCGGGAATGGCTGGCCAACCCCATGGACAACATGCATGT
GGCCGTGGGCGATAATTTGCGGGTGTGGGTCGTGACACTCACGGGTGCCA
AGGGCACTGTGTTTGCTGGAGAGAAGTACAAATTGAAGTTCACCTTCCCC
GTGGACTACCCCAGCAAACCCCCCTCGGTCTACTTCCTTCAACCCACCCC
CCGCCACGAACATGTGTATACCAACGGCGACATCTGTCTGAACCTCCTCG
GTCGCGATTGGCGGCCCAACATGACTGCCTCTATGCTGGCCTTGTCGATC
CTGTCGATGCTCTCATCGGCCAAGGAAAAAAAGATCCCGCAAGATAATCA
CGTTCATGCCGACAACCCGCCGGGGAGGGAGCAAGCGAATTGGCTATACC
ACGATGACAAATGCTAAGAAGAAAAGTTTTTCGTGAGAAGAAAAGAAAAA
GACACACGTGCAAGTAAGAACAAAGAAACAAAAAAGATACTCTTGGGGAA
AAGTATCCATGCGTTATGGTTTTGTTATACTGCTGTGGACAGGGTGTACA
AAGAAAAGGCAG
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protein sequence of jgi.p|Nanoce1779_2|583005

>mRNA_3679-protein ID=mRNA_3679-protein|Name=jgi.p|Nanoce1779_2|583005|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MGRILRAWRGSAKNGGSIYGRMKRFLGALWNGKRSGASNCNTGGRSNIRS
AGGAGRGAGGMGRKLGKSSRAEKHLGTEFRRGNANFRIQKELREWLANPM
DNMHVAVGDNLRVWVVTLTGAKGTVFAGEKYKLKFTFPVDYPSKPPSVYF
LQPTPRHEHVYTNGDICLNLLGRDWRPNMTASMLALSILSMLSSAKEKKI
PQDNHVHADNPPGREQANWLYHDDKC*
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mRNA from alignment at scaffold_6:943891..945440+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3679 ID=mRNA_3679|Name=jgi.p|Nanoce1779_2|583005|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp|location=Sequence derived from alignment at scaffold_6:943891..945440+ (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCTTCAGCACCAC
AGCTGCGGCCAATAGCAGAAGGACAACTGCTCCATCCCTTCCTGGCCTTG
ACTACGCGTGGCGGGGCCTCTCAATCCTCCAGCTTGATGGGACGCATCTT
GCGCGCATGGCGGGGTAGCGCCAAAAATGGCGGAAGCATTTATGGTCGAA
TGAAGCGATTCCTCGGTGCCTTGTGGAATGGAAAGAGAAGTGGTGCAAGC
AACTGTAACACAGGAGGGCGGAGCAATATTCGGAGTGCTGGTGGAGCAGG
GAGAGGGGCGGGCGGAATGGGAAGGAAGCTTGGAAAGAGCAGTCGGGCGG
AGAAGCACTTGGGCACAGAGTTTCGTCGTGGGAATGCCAATTTTCGGATC
CAGAAGGTAAGAATTGTAGGCGGGGGTGGGTGGCGTATATTGTGGTGGGT
AGTGTATATTGTGGTGCGATTTGAAGATAGGGTTTGCATTGGCTTGGCGT
GGTGGATTATTACTTTTTTACAGTGCGTCATCCATGCCTTTGGAGGTAGT
ATTCGTCGTCGTCGTATTTATCGCTCACATCCCGTACCTCCACCTTCCCA
AATATACAGGAATTGCGGGAATGGCTGGCCAACCCCATGGACAACATGCA
TGTGGCCGTGGGCGATAATTTGCGGGTGTGGGTCGTGACACTCACGGGTG
CCAAGGGCACTGTGTTTGCTGGAGAGAAGTACAAATTGAAGGTATGTATT
GTTGATTGAGATGCGAGGAAGTGTCTTGTGTGTGCTGGTGGTGAATGGGT
GGGTAAAGAGGTCGGGTGTGGGAGGAGGAGGGAGGACAAGTGGGAGGGTA
TCTATGGATGAGGGCTTATTAGAACATCAACGTTTTTTTGGGCGTACGGC
CGGCTGGCTATTATTTCCCCTGTGCCATCGTCTGATCTCTTCTTCTACAG
CTGCTGAGCATGCGTTACATTTAGAGATCGTCGTGATGTGAACGGATGTC
AATCAAACGCCCGACTCTCACTCTACGGTCTTCTCACATTCCATCATCCC
CTTCCATCAATCACTCACTCACCTACAATATGAACTCCCGCATCTCTCTT
CTTCCTGCTCCACCACCACTAAACAGTTCACCTTCCCCGTGGACTACCCC
AGCAAACCCCCCTCGGTCTACTTCCTTCAACCCACCCCCCGCCACGAACA
TGTGTATACCAACGGCGACATCTGTCTGAACCTCCTCGGTCGCGATTGGC
GGCCCAACATGACTGCCTCTATGCTGGCCTTGTCGATCCTGTCGATGCTC
TCATCGGCCAAGGAAAAAAAGATCCCGCAAGATAATCACGTTCATGCCGA
CAACCCGCCGGGGAGGGAGCAAGCGAATTGGCTATACCACGATGACAAAT
GCTAAGAAGAAAAGTTTTTCGTGAGAAGAAAAGAAAAAGACACACGTGCA
AGTAAGAACAAAGAAACAAAAAAGATACTCTTGGGGAAAAGTATCCATGC
GTTATGGTTTTGTTATACTGCTGTGGACAGGGTGTACAAAGAAAAGGCAG
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Coding sequence (CDS) from alignment at scaffold_6:943891..945440+

>mRNA_3679 ID=mRNA_3679|Name=jgi.p|Nanoce1779_2|583005|organism=Nannochloropsis oceanica|type=CDS|length=2043bp|location=Sequence derived from alignment at scaffold_6:943891..945440+ (Nannochloropsis oceanica)
ATGGGACGCATCTTGCGCGCATGGCGGGGTAGCGCCAAAAATGGCGGAAG
CATTTATGGTCGAATGAAGCGATTCCTCGGTGCCTTGTGGAATGGAAAGA
GAAGTGGTGCAAGCAACTGTAACACAGGAGGGCGGAGCAATATTCGGAGT
GCTGGTGGAGCAGGGAGAGGGGCGGGCGGAATGGGAAGGAAGCTTGGAAA
GAGCAGTCGGGCGGAGAAGCACTTGGGCACAGAGTTTCGTCGTGGGAATG
CCAATTTTCGGATCCAGAAGGAATTGCGGGAATGGCTGGCCAACCCCATG
GACAACATGCATGTGGCCGTGGGCGATAATTTGCGGGTGTGGGTCGTGAC
ACTCACGGGTGCCAAGGGCACTGTGTTTGCTGGAGAGAAGTACAAATTGA
AGTTCACCTTCCCCGTGGACTACCCCAGCAAACCCCCCTCGGTCTACTTC
CTTCAACCCACCCCCCGCCACGAACATGTGTATACCAACGGCGACATCTG
TCTGAACCTCCTCGGTCGCGATTGGCGGCCCAACATGACTGCCTCTATGC
TGGCCTTGTCGATCCTGTCGATGCTCTCATCGGCCAAGGAAAAAAAGATC
CCGCAAGATAATCACGTTCATGCCGACAACCCGCCGGGGAGGGAGCAAGC
GAATTGGCTATACCACGATGACAAATGCTAAATGGGACGCATCTTGCGCG
CATGGCGGGGTAGCGCCAAAAATGGCGGAAGCATTTATGGTCGAATGAAG
CGATTCCTCGGTGCCTTGTGGAATGGAAAGAGAAGTGGTGCAAGCAACTG
TAACACAGGAGGGCGGAGCAATATTCGGAGTGCTGGTGGAGCAGGGAGAG
GGGCGGGCGGAATGGGAAGGAAGCTTGGAAAGAGCAGTCGGGCGGAGAAG
CACTTGGGCACAGAGTTTCGTCGTGGGAATGCCAATTTTCGGATCCAGAA
GGAATTGCGGGAATGGCTGGCCAACCCCATGGACAACATGCATGTGGCCG
TGGGCGATAATTTGCGGGTGTGGGTCGTGACACTCACGGGTGCCAAGGGC
ACTGTGTTTGCTGGAGAGAAGTACAAATTGAAGTTCACCTTCCCCGTGGA
CTACCCCAGCAAACCCCCCTCGGTCTACTTCCTTCAACCCACCCCCCGCC
ACGAACATGTGTATACCAACGGCGACATCTGTCTGAACCTCCTCGGTCGC
GATTGGCGGCCCAACATGACTGCCTCTATGCTGGCCTTGTCGATCCTGTC
GATGCTCTCATCGGCCAAGGAAAAAAAGATCCCGCAAGATAATCACGTTC
ATGCCGACAACCCGCCGGGGAGGGAGCAAGCGAATTGGCTATACCACGAT
GACAAATGCTAAATGGGACGCATCTTGCGCGCATGGCGGGGTAGCGCCAA
AAATGGCGGAAGCATTTATGGTCGAATGAAGCGATTCCTCGGTGCCTTGT
GGAATGGAAAGAGAAGTGGTGCAAGCAACTGTAACACAGGAGGGCGGAGC
AATATTCGGAGTGCTGGTGGAGCAGGGAGAGGGGCGGGCGGAATGGGAAG
GAAGCTTGGAAAGAGCAGTCGGGCGGAGAAGCACTTGGGCACAGAGTTTC
GTCGTGGGAATGCCAATTTTCGGATCCAGAAGGAATTGCGGGAATGGCTG
GCCAACCCCATGGACAACATGCATGTGGCCGTGGGCGATAATTTGCGGGT
GTGGGTCGTGACACTCACGGGTGCCAAGGGCACTGTGTTTGCTGGAGAGA
AGTACAAATTGAAGTTCACCTTCCCCGTGGACTACCCCAGCAAACCCCCC
TCGGTCTACTTCCTTCAACCCACCCCCCGCCACGAACATGTGTATACCAA
CGGCGACATCTGTCTGAACCTCCTCGGTCGCGATTGGCGGCCCAACATGA
CTGCCTCTATGCTGGCCTTGTCGATCCTGTCGATGCTCTCATCGGCCAAG
GAAAAAAAGATCCCGCAAGATAATCACGTTCATGCCGACAACCCGCCGGG
GAGGGAGCAAGCGAATTGGCTATACCACGATGACAAATGCTAA
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Synonyms
Publications