jgi.p|Nanoce1779_2|669604, mRNA_3676 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669604
Unique NamemRNA_3676
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1349
Alignment locationscaffold_6:939162..941818 -

Link to JBrowse

Properties
Property NameValue
TranscriptId669690
TrackFilteredModels2
ProteinId669604
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:939162..941818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669604gene_3676Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669604mRNA_3676-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3676CDS_3676Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3676 ID=mRNA_3676|Name=jgi.p|Nanoce1779_2|669604|organism=Nannochloropsis oceanica|type=mRNA|length=1349bp
TGGTTGTGTAACGTGGACTCTGCGCCCCCCCGTGGTCATCGCTAAATTAT
TTGACAACTTTTCGATGTCGTCTTCCCAAGTCCGATGCCCTTCCACAGCA
CACTGCAGCCCGCGCACACAGCCACCGCCACCACCATCACGACAAGAATA
AACCGTTGGACTATATCCGCGCGGCGGCGGTGGAGCTGTGGCTGTTTGGC
CCAAGCATCTCTCAAGCCTTCTATTTGCTCCTTAAATTTTGCTTATCGTA
TGCCCTAACTTCCCACCCACGCACAGCACCAGAGGCCACGCGCTCTTCCT
GCGCTTGCAGCCAAGCCTCTCTACTCGCATCTCCCATCGTCCCCGCCCTC
CAGCTCCTCCCGAGCCTGTCCCCCGGCCCTTCTCTACCACTAATCACATA
CCCCAAAAAATGGCGGAACGCAAGGCTGTCATCAAAAACGCGGACATGTC
GGAGGACATGCAGCAAGACGCTGTCGACTGCGCGTCGCAGGCACTGGACC
AATTCAATATCGAGAAAGACATTGCAGCTTACGTGAAGAAGGAGTTTGAT
AAGAATCAAAAAAAGGGGTTCTAATACACCACTCTGTCTTTCCAACTTCC
CTCAATATTCGAAACACCTTGGAACCTCCAGTACTAGCACACACAGAGAG
GGAAAATGACACAATCCCCGGCTGCTAGTGGACCTTCTACGGCCGCCGCC
CCTCCTTCATTCCACTCTCTCCTGCTCTCCGTTTCTCTTATATCATATTG
AGATCTTCACCTGGTGATCTTCTGATGTCCCTTTTCTTCCTGACCCCCTC
CTATGTATATATGTCCCGGCCCGCCCTCCATCTCTCCCTCCTTCCCTCCC
TACCTCCCTCTACACACACAATTCCGCACTGTTGAGTAATTGCTTCCTAG
TGCTTCGCTTTGTTGCAGATCTTGTTGTTATTGATGCAAATTCGTCGTAT
CGGCCACACTTGCTTAGAATGCGAATTACAATTTTCAACTAACAGACGCA
TCACCCCTCCATCAAGCCCCCACCCACTTCGAATCAACCACAAGAGACCC
GTACATGCATCAAACTAGGCTCACTGATTCCCGCTGTCTATCCATATATC
AATCTCTCTCTTCCTTTCTCCCATTAGTGGTGGTCCTCATCATCAATGTA
CACCGAGTTGTACTCATCTGCGCATTCCAACATACCCTTGACGATGAAGC
CAGCTGCGGAGATGACCTTACGAGAAGGCGGGTAGAACGTCAGGACCATC
GCTACGCACACCATGGTCACGGCAATCTCTGGAGTTACTGTCAAGGCGAG
GGCGCTTGAGGTCATCTTTTTGGTTGGGGTGTTGATAGCTGGCTGTGCT
back to top

protein sequence of jgi.p|Nanoce1779_2|669604

>mRNA_3676-protein ID=mRNA_3676-protein|Name=jgi.p|Nanoce1779_2|669604|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MHQTRLTDSRCLSIYQSLSSFLPLVVVLIINVHRVVLICAFQHTLDDEAS
CGDDLTRRRVERQDHRYAHHGHGNLWSYCQGEGA*
back to top

mRNA from alignment at scaffold_6:939162..941818-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3676 ID=mRNA_3676|Name=jgi.p|Nanoce1779_2|669604|organism=Nannochloropsis oceanica|type=mRNA|length=2657bp|location=Sequence derived from alignment at scaffold_6:939162..941818- (Nannochloropsis oceanica)
TGGTTGTGTAACGTGGACTCTGCGCCCCCCCGTGGTCATCGCTAAATTAT
TTGACAACTTTTCGATGTCGTCTTCCCAAGTCCGATGCCCTTCCACAGCA
CACTGCAGCCCGCGCACACAGCCACCGCCACCACCATCACGACAAGAATA
AACCGTTGGACTATATCCGCGCGGCGGCGGTGGAGCTGTGGCTGTTTGGC
CCAAGCATCTCTCAAGCCTTCTATTTGCTCCTTAAATTTTGCTTATCGTA
TGCCCTAACTTCCCACCCACGCACAGCACCAGAGGCCACGCGCTCTTCCT
GCGCTTGCAGCCAAGCCTCTCTACTCGCATCTCCCATCGTCCCCGCCCTC
CAGCTCCTCCCGAGCCTGTCCCCCGGCCCTTCTCTACCACTAATCACATA
CCCCAAAAAATGGCGGAACGCAAGGCTGTCATCAAAAACGCGGACATGTC
GGAGGACATGCAGCAAGACGCTGTCGACTGCGCGTCGCAGGCACTGGACC
AATTCAATATCGAGAAAGACATTGCAGCTTACGTGAAGAAGGAGTTTGAT
AAGAAGTACAACCCGACTTGGCATTGCATTGTTGGGAGGAACTTTGGTTC
TTACGTCACGCATGAAACAAAGCACTTCATTTATTTTTACTTGGGGCAGG
TGGCTATTCTTTTATTCAAATCGGGTTAATGCCAGAACTAGAGAGAAGCG
TCAGCGGTTATTTACGGAATTTTGTTTGTGTATGATAGAAAACGGGAGAA
AAGGAATGGAGACGACAATAAGGGAGGTGTATATTTTTTAGAGGAGTCAG
ATGCAAGGTCAGGATGCTGTCATAAGGAAAAGAAGTGGAAAAGTTAAATA
AAGGAGATTGTCTTCCATCAGCTTTGTGCTACTTACTTGTGGTGCGTCTT
AGAGGGAAGGGGGACAAAGAATGGAAGAAGGGAAGATGCGTGCGTGTCTC
CAATGCATCACGATAAGAGAGGAGAATCAACGGATAATCAAGGAGACACG
GGCGACAAGAAGCATACATGAGATAATATTATCGACGGGAATGGTGGCGG
TGGTGGTGGTAGTGATGGCGTCGGCGGCTGCTGCAGCTGCACGGAGAGCG
GAGAGGAAAGAGTGGGGTGGGAAGGGGGGTGGGGAAGATTAGTCAAAGGA
GCTCCAAAAAGCACTGACATAAAAAAACCCAAGCAAAATCGAGGAACAGG
AGCGAGAGGAGAGGGATAGCCGCTACACTCACTGCTCAATGCGAACGAAG
CATGAGATACGAAGTCTCGTTCGGCTGATTGTTTAATTTTCGTGCCTGAA
CCACTTCCTTACCCACCAGGCTCACCTCCCTTCGTTTCTATCTTTCAGGC
AAGGAGGATCTTCCGTCCACCATCCCCCTCGAATAAAAGCTATCATCGTC
TCCGTATCTCTTCTTTAATTATCATCTATGTCAATACTTAGATTGCTGCG
TATCCTCTTCTCGCTCTTCCATCTCTTCAAAGACGTTACCTCTCGCTCAA
ATTTTCCTCTCGCTGTTCGGCTTCAGAGAAAAATTCAGGGATAAGCCAGG
TAAGGATAACGAATGATTGCACTGCCGATTCTCCTTTTCCTTCTTCTGGT
GCTGCTGCCGAAAGAGCCTTCTTTCCATTTTCCGTTCCCCTCCACGTATG
TTGTCAAAAATCCCGCTCGTCCAATGACTGGCTAGTCTAGTCTCGAATGG
AGAAGAGGCGGGGCACAGGGCAAACAGGGGCGCCTGAATCCATCCCTCTT
CCCAAAAAAATCAAAACAGGCAACCTTAAGGGAGGTCAGGAAACGATCCC
CTGCCTCCCTCCGCTCCTTCGCTTCTTCCTTCCCTTCCTCACACTTACAG
TTCCTACCTACAGTCAAAAAAAGGGGTTCTAATACACCACTCTGTCTTTC
CAACTTCCCTCAATATTCGAAACACCTTGGAACCTCCAGTACTAGCACAC
ACAGAGAGGGAAAATGACACAATCCCCGGCTGCTAGTGGACCTTCTACGG
CCGCCGCCCCTCCTTCATTCCACTCTCTCCTGCTCTCCGTTTCTCTTATA
TCATATTGAGATCTTCACCTGGTGATCTTCTGATGTCCCTTTTCTTCCTG
ACCCCCTCCTATGTATATATGTCCCGGCCCGCCCTCCATCTCTCCCTCCT
TCCCTCCCTACCTCCCTCTACACACACAATTCCGCACTGTTGAGTAATTG
CTTCCTAGTGCTTCGCTTTGTTGCAGATCTTGTTGTTATTGATGCAAATT
CGTCGTATCGGCCACACTTGCTTAGAATGCGAATTACAATTTTCAACTAA
CAGACGCATCACCCCTCCATCAAGCCCCCACCCACTTCGAATCAACCACA
AGAGACCCGTACATGCATCAAACTAGGCTCACTGATTCCCGCTGTCTATC
CATATATCAATCTCTCTCTTCCTTTCTCCCATTAGTGGTGGTCCTCATCA
TCAATGTACACCGAGTTGTACTCATCTGCGCATTCCAACATACCCTTGAC
GATGAAGCCAGCTGCGGAGATGACCTTACGAGAAGGCGGGTAGAACGTCA
GGACCATCGCTACGCACACCATGGTCACGGCAATCTCTGGAGTTACTGTC
AAGGCGAGGGCGCTTGAGGTCATCTTTTTGGTTGGGGTGTTGATAGCTGG
CTGTGCT
back to top

Coding sequence (CDS) from alignment at scaffold_6:939162..941818-

>mRNA_3676 ID=mRNA_3676|Name=jgi.p|Nanoce1779_2|669604|organism=Nannochloropsis oceanica|type=CDS|length=255bp|location=Sequence derived from alignment at scaffold_6:939162..941818- (Nannochloropsis oceanica)
ATGCATCAAACTAGGCTCACTGATTCCCGCTGTCTATCCATATATCAATC
TCTCTCTTCCTTTCTCCCATTAGTGGTGGTCCTCATCATCAATGTACACC
GAGTTGTACTCATCTGCGCATTCCAACATACCCTTGACGATGAAGCCAGC
TGCGGAGATGACCTTACGAGAAGGCGGGTAGAACGTCAGGACCATCGCTA
CGCACACCATGGTCACGGCAATCTCTGGAGTTACTGTCAAGGCGAGGGCG
CTTGA
back to top
Synonyms
Publications