jgi.p|Nanoce1779_2|582984, mRNA_3674 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582984
Unique NamemRNA_3674
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1000
Alignment locationscaffold_6:936171..937734 +

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Properties
Property NameValue
TranscriptId583070
TrackFilteredModels2
ProteinId582984
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:936171..937734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582984gene_3674Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582984mRNA_3674-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3674CDS_3674Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3674 ID=mRNA_3674|Name=jgi.p|Nanoce1779_2|582984|organism=Nannochloropsis oceanica|type=mRNA|length=1000bp
ACAGCGCCCCGACGCCATGGCGAGAAAAGAGCGGTCACATGCCTAGCTCG
TTCATCCTGCTGCTATCTCATCATGCCCCTCGTCTTCCCACGCATTTCCG
CAACGGCGGCTCGAACGCGTCGTCGACCTATCCCTACCAGTGCGTTTCCT
GTTATTCCTCTAGTCCGCCCTGCTGCAGCGACTGGCAGTGTCATGTGCGT
ACATCAATGGATACAGCGGCACATTAACGATCCTTACGTCAAGGCATCCC
GCAAGCAGGAGCTACGATCTCGTGCTGCCTTCAAGCTCAAGGAGATGCAA
GACAAACATCGAATCCTACGCCGAGGCGACTGTGTGATTGACTTGGGCTG
CGCTCCCGGCGGGTGGAGCGAAGTGGCCGCTCAAATTGTCCTTGTCAGAG
CCACCCCTCAGGCAATTCCACCTTCCTTCACCAGCAACGGTGGTGGGTCG
ACAACAAAAGCAGTAGCGTGGGGAGGAGCAAAAGCGGCGCCCTTCCGTCC
ACCATTAGCAGCACCAGCATCGCCACCAAGAGGTCTCGTCATCGGCATCG
ACAAACGACCAATGCTTCCATTACCCGGCGTTTTTTTTCTACACGGGGAT
TTTACTGATGAAACCACACTGGCCTCGCTTCGAGTGGCTCTTAGAAATGG
GGAAATGGAAGAGGAAGAAGAGGAAAAAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGACGACGACGACGACAAAAACGAAGCAGTAGGGTT
GTGGACGTCATCCTCTCAGATATGGCGCCTGACTTATCTGGGGATAAGTT
CCGAGATCATCGGCGAACGCTGGATTTGGGTTATGAGGTGTGATAATTGA
AAAGCGGAAGGTTGGAGGGAGACAAGGTGCTGGCCTTTGCTGACCGAGCC
TTCCAAGAAAGAAACAGCAGCAGCTCCAGCAGTGGCGCTGAAAGCAGGAA
AGGCAGCAATAAAAAGACTCTTCTCATCAAGCTGTTTAAAGGACGAGATG
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protein sequence of jgi.p|Nanoce1779_2|582984

>mRNA_3674-protein ID=mRNA_3674-protein|Name=jgi.p|Nanoce1779_2|582984|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MPLVFPRISATAARTRRRPIPTSAFPVIPLVRPAAATGSVMCVHQWIQRH
INDPYVKASRKQELRSRAAFKLKEMQDKHRILRRGDCVIDLGCAPGGWSE
VAAQIVLVRATPQAIPPSFTSNGGGSTTKAVAWGGAKAAPFRPPLAAPAS
PPRGLVIGIDKRPMLPLPGVFFLHGDFTDETTLASLRVALRNGEMEEEEE
EKGGGGGGGGGGGGGRRRRQKRSSRVVDVILSDMAPDLSGDKFRDHRRTL
DLGYEV*
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mRNA from alignment at scaffold_6:936171..937734+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3674 ID=mRNA_3674|Name=jgi.p|Nanoce1779_2|582984|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp|location=Sequence derived from alignment at scaffold_6:936171..937734+ (Nannochloropsis oceanica)
ACAGCGCCCCGACGCCATGGCGAGAAAAGAGCGGTCACATGCCTAGCTCG
TTCATCCTGCTGCTATCTCATCATGCCCCTCGTCTTCCCACGCATTTCCG
CAACGGCGGCTCGAACGCGTCGTCGACCTATCCCTACCAGTGCGTTTCCT
GTTATTCCTCTAGTCCGCCCTGCTGCAGCGACTGGCAGTGTCATGTGCGT
ACATCAATGGATACAGCGGCACATTAACGATCCTTACGTCAAGGCATCCC
GCAAGCAGGAGCTACGATCTCGTGCTGCCTTCAAGCTCAAGGTAATGGGT
GTGGATGCATGTATGCAAGGGGTGGGACGGGGAAACCACAACGTGCTTGT
GTGAATCAATATTTCACAAGAGCGCACGAGCAACTGTCGTGCCACACGAT
CGATCCACAGTTATGCATGACCTCAAGTACTCATGTCGCTCAACCACAAC
TCGTACATTCACACATTCCACAAGGAGATGCAAGACAAACATCGAATCCT
ACGCCGAGGCGACTGGTGCGTATTTTGATTTGATAGCTGTGTTACCCTTT
AATTGATTCATCTAGAGTACTTAAAGCTGTGCCTGAATGCACAATTTTGT
GCGCTCATTGCTAATAGTTATTTGACACTCATCGCCTTTCCTTCCTTCCC
CATTGCTACATAACAATTGCGCACCCAGTGTGATTGACTTGGGCTGCGCT
CCCGGCGGGTGGAGCGAAGTGGCCGCTCAAATTGTCCTTGTCAGAGCCAC
CCCTCAGGCAATTCCACCTTCCTTCACCAGCAACGGTGGTGGGTCGACAA
CAAAAGCAGTAGCGTGGGGAGGAGCAAAAGCGGCGCCCTTCCGTCCACCA
TTAGCAGCACCAGCATCGCCACCAAGAGGTCTCGTCATCGGCATCGACAA
ACGACCAATGCTTCCATTACCCGGCGTTTTTTTTCTACACGGGGATTTTA
CTGATGAAACCACACTGGCCTCGCTTCGAGTGGCTCTTAGAAATGGGGAA
ATGGAAGAGGAAGAAGAGGAAAAAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGACGACGACGACGACAAAAACGAAGCAGTAGGGTTGTGG
ACGTCATCCTCTCAGATATGGCGCCTGACTTATCTGGGGATAAGTTCCGA
GATCATCGGCGAACGCTGGATTTGGGTTATGAGGTGTGATAATTGAAAAG
CGGAAGGTTGGAGGGAGACAAGGTAGCGGTGTGAAGGAGGACGGAGGGAC
TCCAGATGCTGGTGCGGCTGGCATGGTTGTGTAATGCTCGCGGAGCAGTC
AATGAGACTCACCTCCCTCGCTCTAGTGAAATGCTGTCCACAATCAAGAC
ACGTGCTTGACCTTGTTTCCACAAACCCCACAACCCCTACCCTCAAAATC
TCTTACTCACGACTCTCTCTCTTTCAAATCACCCTTGTAGGTGCTGGCCT
TTGCTGACCGAGCCTTCCAAGAAAGAAACAGCAGCAGCTCCAGCAGTGGC
GCTGAAAGCAGGAAAGGCAGCAATAAAAAGACTCTTCTCATCAAGCTGTT
TAAAGGACGAGATG
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Coding sequence (CDS) from alignment at scaffold_6:936171..937734+

>mRNA_3674 ID=mRNA_3674|Name=jgi.p|Nanoce1779_2|582984|organism=Nannochloropsis oceanica|type=CDS|length=2313bp|location=Sequence derived from alignment at scaffold_6:936171..937734+ (Nannochloropsis oceanica)
ATGCCCCTCGTCTTCCCACGCATTTCCGCAACGGCGGCTCGAACGCGTCG
TCGACCTATCCCTACCAGTGCGTTTCCTGTTATTCCTCTAGTCCGCCCTG
CTGCAGCGACTGGCAGTGTCATGTGCGTACATCAATGGATACAGCGGCAC
ATTAACGATCCTTACGTCAAGGCATCCCGCAAGCAGGAGCTACGATCTCG
TGCTGCCTTCAAGCTCAAGGAGATGCAAGACAAACATCGAATCCTACGCC
GAGGCGACTGTGTGATTGACTTGGGCTGCGCTCCCGGCGGGTGGAGCGAA
GTGGCCGCTCAAATTGTCCTTGTCAGAGCCACCCCTCAGGCAATTCCACC
TTCCTTCACCAGCAACGGTGGTGGGTCGACAACAAAAGCAGTAGCGTGGG
GAGGAGCAAAAGCGGCGCCCTTCCGTCCACCATTAGCAGCACCAGCATCG
CCACCAAGAGGTCTCGTCATCGGCATCGACAAACGACCAATGCTTCCATT
ACCCGGCGTTTTTTTTCTACACGGGGATTTTACTGATGAAACCACACTGG
CCTCGCTTCGAGTGGCTCTTAGAAATGGGGAAATGGAAGAGGAAGAAGAG
GAAAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACG
ACGACGACAAAAACGAAGCAGTAGGGTTGTGGACGTCATCCTCTCAGATA
TGGCGCCTGACTTATCTGGGGATAAGTTCCGAGATCATCGGCGAACGCTG
GATTTGGGTTATGAGGTGTGAATGCCCCTCGTCTTCCCACGCATTTCCGC
AACGGCGGCTCGAACGCGTCGTCGACCTATCCCTACCAGTGCGTTTCCTG
TTATTCCTCTAGTCCGCCCTGCTGCAGCGACTGGCAGTGTCATGTGCGTA
CATCAATGGATACAGCGGCACATTAACGATCCTTACGTCAAGGCATCCCG
CAAGCAGGAGCTACGATCTCGTGCTGCCTTCAAGCTCAAGGAGATGCAAG
ACAAACATCGAATCCTACGCCGAGGCGACTGTGTGATTGACTTGGGCTGC
GCTCCCGGCGGGTGGAGCGAAGTGGCCGCTCAAATTGTCCTTGTCAGAGC
CACCCCTCAGGCAATTCCACCTTCCTTCACCAGCAACGGTGGTGGGTCGA
CAACAAAAGCAGTAGCGTGGGGAGGAGCAAAAGCGGCGCCCTTCCGTCCA
CCATTAGCAGCACCAGCATCGCCACCAAGAGGTCTCGTCATCGGCATCGA
CAAACGACCAATGCTTCCATTACCCGGCGTTTTTTTTCTACACGGGGATT
TTACTGATGAAACCACACTGGCCTCGCTTCGAGTGGCTCTTAGAAATGGG
GAAATGGAAGAGGAAGAAGAGGAAAAAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGACGACGACGACGACAAAAACGAAGCAGTAGGGTTG
TGGACGTCATCCTCTCAGATATGGCGCCTGACTTATCTGGGGATAAGTTC
CGAGATCATCGGCGAACGCTGGATTTGGGTTATGAGGTGTGAATGCCCCT
CGTCTTCCCACGCATTTCCGCAACGGCGGCTCGAACGCGTCGTCGACCTA
TCCCTACCAGTGCGTTTCCTGTTATTCCTCTAGTCCGCCCTGCTGCAGCG
ACTGGCAGTGTCATGTGCGTACATCAATGGATACAGCGGCACATTAACGA
TCCTTACGTCAAGGCATCCCGCAAGCAGGAGCTACGATCTCGTGCTGCCT
TCAAGCTCAAGGAGATGCAAGACAAACATCGAATCCTACGCCGAGGCGAC
TGTGTGATTGACTTGGGCTGCGCTCCCGGCGGGTGGAGCGAAGTGGCCGC
TCAAATTGTCCTTGTCAGAGCCACCCCTCAGGCAATTCCACCTTCCTTCA
CCAGCAACGGTGGTGGGTCGACAACAAAAGCAGTAGCGTGGGGAGGAGCA
AAAGCGGCGCCCTTCCGTCCACCATTAGCAGCACCAGCATCGCCACCAAG
AGGTCTCGTCATCGGCATCGACAAACGACCAATGCTTCCATTACCCGGCG
TTTTTTTTCTACACGGGGATTTTACTGATGAAACCACACTGGCCTCGCTT
CGAGTGGCTCTTAGAAATGGGGAAATGGAAGAGGAAGAAGAGGAAAAAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGAC
AAAAACGAAGCAGTAGGGTTGTGGACGTCATCCTCTCAGATATGGCGCCT
GACTTATCTGGGGATAAGTTCCGAGATCATCGGCGAACGCTGGATTTGGG
TTATGAGGTGTGA
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Synonyms
Publications