jgi.p|Nanoce1779_2|622871, mRNA_3673 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622871
Unique Name	mRNA_3673
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1026
Alignment location	scaffold_6:934064..935272 +

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Properties


Property Name	Value
TranscriptId	622957
Track	FilteredModels2
ProteinId	622871

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:934064..935272 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622871	gene_3673	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622871	mRNA_3673-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3673	CDS_3673	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:934064..935272+
coding sequence from alignment at scaffold_6:934064..935272+

mRNA sequence

>mRNA_3673 ID=mRNA_3673|Name=jgi.p|Nanoce1779_2|622871|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
ATGGCCGCAGAAATTGTGGATCTGAACAAGCTACGAGAGCAGAGTTGGGG
AGGCATTCCAGATCGGTATCGAGGGACGATCTGGCGATTGCTGTTGGGCT
ATTTACCTGCCAATCGCGATAGAAGGGAGGCGACGCTGAAGAGGAAACGG
AGGGAGTATGCAGAGATATTGCCCTTGTATTTTAATATTGCCCCGGAGGA
GAGGACGACGCAGGAACAGGAGATATTAAGGCAGATTTTGGTGGATTTGC
CGAGAACACAGCCAGAAATGCCATTGTTCCACCAGGAGGAAACGCAGAGA
TGCATGGAGAGGGTGTTGTATGTGTGGGCGATTCGACATCCGGCTAGCGG
ATATGTACAGGGGATGAACGACCTGATCACACCCTTGATCTTGGTGTTTT
TGGCAGAGCAGCTGATGCATCCACCGGCCTCCGGTGCTGCCGCCGCGGAA
GCGCAAGCGCTGGACGTGTCAAAAGTGTCAGCTGAAATCCTAGAGCAAGT
AGAAGCAGATACTTATTGGTGCATCACCAAGCTATTGGATAACATTCAGG
ACCATTACATTTTCAGCCAACCGGGCTTACAACGGATGACTTTTCGATTG
CAGGCGCTTGTGGAACGCCATGACCCCTCCCTGCACCGACACTTCGAGGA
GGAGGGGCTGCAGTATGTGCAGTTCGCGTTCCGGTGGATGAATTGTTTGT
TGATGCGCGAGTTGTCTTTGGATGCAATTATAAGAATATGGGACACGGAG
TTGGCCGAAGAAACGGGGGGATTTGAGGTCTTTCATGTATACTTATGCGC
TGCCTTACTGCTTCGGTTTTCCAATCACTTGAGCACGCTACCTTTTCAGG
ACTTGGTTTTGTTTTTGCAGGACCTGCCAACGCATGACTGGACATTGCAT
GAGATTGAGCCATTGTTGTCGCAGGCTCACGTGCTTCGGGCGCTTTACCC
TGAGTTTGGGCAGCCGGGGGGGGCAAGGGTGTTGCCGCCTGTAGGGGGGG
GAGGAAGGAGAGAACGAGGAAGGTAG

protein sequence of jgi.p|Nanoce1779_2|622871

>mRNA_3673-protein ID=mRNA_3673-protein|Name=jgi.p|Nanoce1779_2|622871|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MAAEIVDLNKLREQSWGGIPDRYRGTIWRLLLGYLPANRDRREATLKRKR
REYAEILPLYFNIAPEERTTQEQEILRQILVDLPRTQPEMPLFHQEETQR
CMERVLYVWAIRHPASGYVQGMNDLITPLILVFLAEQLMHPPASGAAAAE
AQALDVSKVSAEILEQVEADTYWCITKLLDNIQDHYIFSQPGLQRMTFRL
QALVERHDPSLHRHFEEEGLQYVQFAFRWMNCLLMRELSLDAIIRIWDTE
LAEETGGFEVFHVYLCAALLLRFSNHLSTLPFQDLVLFLQDLPTHDWTLH
EIEPLLSQAHVLRALYPEFGQPGGARVLPPVGGGGRRERGR*

mRNA from alignment at scaffold_6:934064..935272+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3673 ID=mRNA_3673|Name=jgi.p|Nanoce1779_2|622871|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp|location=Sequence derived from alignment at scaffold_6:934064..935272+ (Nannochloropsis oceanica)
ATGGCCGCAGAAATTGTGGATCTGAACAAGCTACGAGAGCAGAGTTGGGG
AGGCATTCCAGATCGGTATCGAGGGACGATCTGGCGATTGCTGTTGGGCT
ATTTACCTGCCAATCGCGATAGAAGGGAGGCGACGCTGAAGAGGAAACGG
AGGGAGTATGCAGAGATATTGCCCTTGTATTTTAATATTGCCCCGGAGGA
GAGGACGACGCAGGAACAGGAGATATTAAGGCAGATTTTGGTGGATTTGC
CGAGAACACAGCCAGAAATGCCATTGTTCCACCAGGAGGAAACGCAGAGA
TGCATGGAGAGGGTGTTGTATGTGTGGGCGATTCGACATCCGGCTAGCGG
ATATGTACAGGGGATGAACGACCTGATCACACCCTTGATCTTGGTGTTTT
TGGCAGAGCAGCTGATGCATCCACCGGCCTCGTCGTCTTCCTCGTCCTCC
ACGCCATCGTCCCCGTCCTCTTCCTCTTCCTCCTCATTGGAGCGTGGCTC
ACCCGCCGCAGAATCATCCTACCTCTCCTCCTCCATCTCCACCTCCCACC
ACGCCCCCACTTCCTTCATCTCCCCCTCCTCCTCAACCCCACGCCGCAGC
GGTCGGACCGCCAGCGGTGCTGCCGCCGCGGAAGCGCAAGCGCTGGACGT
GTCAAAAGTGTCAGCTGAAATCCTAGAGCAAGTAGAAGCAGATACTTATT
GGTGCATCACCAAGCTATTGGATAACATTCAGGACCATTACATTTTCAGC
CAACCGGGCTTACAACGGATGACTTTTCGATTGCAGGCGCTTGTGGAACG
CCATGACCCCTCCCTGCACCGACACTTCGAGGAGGAGGGGCTGCAGTATG
TGCAGTTCGCGTTCCGGTGGATGAATTGTTTGTTGATGCGCGAGTTGTCT
TTGGATGCAATTATAAGAATATGGGACACGGAGTTGGCCGAAGAAACGGG
GGGATTTGAGGTCTTTCATGTATACTTATGCGCTGCCTTACTGCTTCGGT
TTTCCAATCACTTGAGCACGCTACCTTTTCAGGACTTGGTTTTGTTTTTG
CAGGACCTGCCAACGCATGACTGGACATTGCATGAGATTGAGCCATTGTT
GTCGCAGGCTCACGTGCTTCGGGCGCTTTACCCTGAGTTTGGGCAGCCGG
GGGGGGCAAGGGTGTTGCCGCCTGTAGGGGGGGGAGGAAGGAGAGAACGA
GGAAGGTAG

Coding sequence (CDS) from alignment at scaffold_6:934064..935272+

>mRNA_3673 ID=mRNA_3673|Name=jgi.p|Nanoce1779_2|622871|organism=Nannochloropsis oceanica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_6:934064..935272+ (Nannochloropsis oceanica)
ATGGCCGCAGAAATTGTGGATCTGAACAAGCTACGAGAGCAGAGTTGGGG
AGGCATTCCAGATCGGTATCGAGGGACGATCTGGCGATTGCTGTTGGGCT
ATTTACCTGCCAATCGCGATAGAAGGGAGGCGACGCTGAAGAGGAAACGG
AGGGAGTATGCAGAGATATTGCCCTTGTATTTTAATATTGCCCCGGAGGA
GAGGACGACGCAGGAACAGGAGATATTAAGGCAGATTTTGGTGGATTTGC
CGAGAACACAGCCAGAAATGCCATTGTTCCACCAGGAGGAAACGCAGAGA
TGCATGGAGAGGGTGTTGTATGTGTGGGCGATTCGACATCCGGCTAGCGG
ATATGTACAGGGGATGAACGACCTGATCACACCCTTGATCTTGGTGTTTT
TGGCAGAGCAGCTGATGCATCCACCGGCCTCCGGTGCTGCCGCCGCGGAA
GCGCAAGCGCTGGACGTGTCAAAAGTGTCAGCTGAAATCCTAGAGCAAGT
AGAAGCAGATACTTATTGGTGCATCACCAAGCTATTGGATAACATTCAGG
ACCATTACATTTTCAGCCAACCGGGCTTACAACGGATGACTTTTCGATTG
CAGGCGCTTGTGGAACGCCATGACCCCTCCCTGCACCGACACTTCGAGGA
GGAGGGGCTGCAGTATGTGCAGTTCGCGTTCCGGTGGATGAATTGTTTGT
TGATGCGCGAGTTGTCTTTGGATGCAATTATAAGAATATGGGACACGGAG
TTGGCCGAAGAAACGGGGGGATTTGAGGTCTTTCATGTATACTTATGCGC
TGCCTTACTGCTTCGGTTTTCCAATCACTTGAGCACGCTACCTTTTCAGG
ACTTGGTTTTGTTTTTGCAGGACCTGCCAACGCATGACTGGACATTGCAT
GAGATTGAGCCATTGTTGTCGCAGGCTCACGTGCTTCGGGCGCTTTACCC
TGAGTTTGGGCAGCCGGGGGGGGCAAGGGTGTTGCCGCCTGTAGGGGGGG
GAGGAAGGAGAGAACGAGGAAGGTAGATGGCCGCAGAAATTGTGGATCTG
AACAAGCTACGAGAGCAGAGTTGGGGAGGCATTCCAGATCGGTATCGAGG
GACGATCTGGCGATTGCTGTTGGGCTATTTACCTGCCAATCGCGATAGAA
GGGAGGCGACGCTGAAGAGGAAACGGAGGGAGTATGCAGAGATATTGCCC
TTGTATTTTAATATTGCCCCGGAGGAGAGGACGACGCAGGAACAGGAGAT
ATTAAGGCAGATTTTGGTGGATTTGCCGAGAACACAGCCAGAAATGCCAT
TGTTCCACCAGGAGGAAACGCAGAGATGCATGGAGAGGGTGTTGTATGTG
TGGGCGATTCGACATCCGGCTAGCGGATATGTACAGGGGATGAACGACCT
GATCACACCCTTGATCTTGGTGTTTTTGGCAGAGCAGCTGATGCATCCAC
CGGCCTCCGGTGCTGCCGCCGCGGAAGCGCAAGCGCTGGACGTGTCAAAA
GTGTCAGCTGAAATCCTAGAGCAAGTAGAAGCAGATACTTATTGGTGCAT
CACCAAGCTATTGGATAACATTCAGGACCATTACATTTTCAGCCAACCGG
GCTTACAACGGATGACTTTTCGATTGCAGGCGCTTGTGGAACGCCATGAC
CCCTCCCTGCACCGACACTTCGAGGAGGAGGGGCTGCAGTATGTGCAGTT
CGCGTTCCGGTGGATGAATTGTTTGTTGATGCGCGAGTTGTCTTTGGATG
CAATTATAAGAATATGGGACACGGAGTTGGCCGAAGAAACGGGGGGATTT
GAGGTCTTTCATGTATACTTATGCGCTGCCTTACTGCTTCGGTTTTCCAA
TCACTTGAGCACGCTACCTTTTCAGGACTTGGTTTTGTTTTTGCAGGACC
TGCCAACGCATGACTGGACATTGCATGAGATTGAGCCATTGTTGTCGCAG
GCTCACGTGCTTCGGGCGCTTTACCCTGAGTTTGGGCAGCCGGGGGGGGC
AAGGGTGTTGCCGCCTGTAGGGGGGGGAGGAAGGAGAGAACGAGGAAGGT
AG

Synonyms

Publications