jgi.p|Nanoce1779_2|577129, mRNA_367 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577129
Unique Name	mRNA_367
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2865
Alignment location	scaffold_3:915283..918147 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577215
Track	FilteredModels2
ProteinId	577129

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:915283..918147 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577129	gene_367	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577129	mRNA_367-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_367	CDS_367	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:915283..918147-
coding sequence from alignment at scaffold_3:915283..918147-

mRNA sequence

>mRNA_367 ID=mRNA_367|Name=jgi.p|Nanoce1779_2|577129|organism=Nannochloropsis oceanica|type=mRNA|length=2865bp
AGGGTCTCAAGAGCATGGGCGCTGGTTTGAGACTGGAGGTTGGAGCTGCA
TGTTTTTAACAGCCATCGATGCCTATGACGATTGGCCATAGATGGTGCGC
GAGACATCATCATTATTTATTATTCCGCTTCCCAGGACATTTCTCATGCC
TGTGAATCTCCCGCTCCCCTCACCACACCACATGATACACTGCCCTACTA
AGCCATGGAGGAGAATGTAGAAATATCAAGCGCGGAGGGCACCCGCAGTA
GCATATGTCCCGCTCTTGTCAACGCTCTCCACCACGACCATGACGACCAC
GAGGCGGACCAGATGAAGGAGTCCATGCACCGCGACGCCCTCTTTCGGTC
TAGGCTCTTGTCGTCCCGCCATTCCTTCACCCAGGGGTTGAATGGGGAGG
AGCAGTTGGACGGCGGCGGACTCGCACAAATCCACCTCAGCAGTAGCCCC
CGTTCAGGCCTCGGCATCATGACGGCGGGCGACCGACAGGACCTCGATCA
AGGAATCGACACTCCACAACAACAGCCGCAACAGCAGCGACAGCGACAGC
AGTTTCAGCAGCAGCAGGCCCCACTACCGGGGCCCATCAATGACCGCGGG
CGAAGTATCAGCTTCAGTAGCATGAGTGCGGAGCCGGCTACCCGACCTGG
GTCGGGGGTTGCGGCTGGCACCAGCACGGCCGCTTCAGAAGGCCCAGAGG
AACGCTACAGCGTGCGCGACCTCTTCCCAGACTATCCCGAGGAATTTCTG
CCTGAAATGCGGGATTTCCAACGCGTTATCATTTCAAATACCCCCGAGCC
TGTGGACAGCGACACCATGGCTGCCTGCCGACAACTTCGCAAGGCCATGA
TGCTTCGAAGCAAATGGATGGGCGTCGCCTTGGACCCCGATGCCCCTTCG
AGCGGACCCGGCCTAACGATCAGCACTTGCAACGGCAGTACCCCTGCACA
GAACTATCCAGAATCGCCCATCTACAACTCCTGCACTCCACCAGCGCCGT
CTGTGCCCTTACCGCCGCATATGTTGGGGCGTGCTTCCCCACCCCCCACC
GCCCCTCCTCCGCCGGGCTCCCCTGATTCCCCCCGAACCTCGGCATACAA
GCGGATGAAACGGCGACAAGCCCCGCCTTATGAGCCGTTTTCCTATAAGC
CGCCCGGGGCGTCCTCGCATCTGATAAAGTTGGTGGATGGTGTATACAAC
GTGTGGGAAGGGGAGGAGGGCGAGAATGGGGAGAAGGGCGGGGAGGTCGT
GACGAAGATTTTTAGCGTGGATGAATTCTATGAGGATTTTCACGATTTGA
TACATTTGTTGACTTGTGGGCCGGTGAAGACGTACAGCTACAAAAGACTG
CAGGTGCTGGAGGCGAGGTTTCACCTCCACAAGCTGTTGAACAGCGACCG
GGAGCTGTCGGCACAAAAATCGGTGCCCCACCGCGATTTCTATAACATTA
GAAAGGTAGACACACATGTGCATCATTCGGCGTGCATGCATTTGAAACAT
CTGTTGCGCTTTATCAAGCATAAGCTCAAGACGGCGGGTGGTGAGATCGT
GGCTTTTCGGGACGGGCAGTTCCTCACTCTAAAGGAAGTGTTTCAGTCTT
TGAAGATTACAGCGATGGACCTGTCGGTTGATACTCTGGACATGCACGCC
AACAATACTTTCCACCGTTTCGATCGCTTTAATTTGAAGTACAATCCGGC
GGGGCAGAGTCGGTTGAGAGAGATCTTCTTGAAGACCGATAATATGATCG
CCGGGACGTATTTGGCTGAGGTAACGCAGCAGGTAATCAGCGATTTAAAC
GCGAGTAAGTATCAGTTGGTGGAGTGGCGCGTGTCGATCTATGGTCGGAA
GCCCAGTGAATGGGATAAGCTCGCCCGATGGTTTTATACGTCTCGGCTGG
CCAGCGATAAGATACGGTGGTTGATCCAGATTCCCCGATTGTACGCCGTC
TACAAAGCCTCGGGGGAGCTGGAGAATTTCGAGCATTTGCTCCGCAATAT
CTTTGCGCCTCTCTTTGAAGTGACCAGAAATCCGGGCAGTAATCCCCCGT
TGGCGATCTTCTTGAATACCATCGTAGGGTTTGACTGTGTTGATGACGAA
AGCAAGCCGGAGATCCACGCGAATCAAGGGCAGAATTTCTCAACGCCTAA
GGATTGGCAGTACAAGCAGGACCCGCCTTATTCGTATTGGTGCTATTATA
TCGCAGCAAACATCAAAAGTTTGAACAATTTTAGACGGGTCAGGGGGATG
TCGACGTTCGAGTTTCGCCCGCATTGTGGGGAGGCGGGCGATCCCGAGCA
TCTTGTAGCAGCGTATTTGTTGGCGGAGAAGATTAACCATGGGATTGTCC
TTCGGAAAATTCCAGGATTGCAGCTATTGTACTATTTGAGTCAGATTGGC
ATGGCCATGTCGCCATTGAGTAACAACAAGTTGTTCTTGGATTATCATCG
GAATCCGTTTGTGAAGTATTTTCATCAGGGGTTGAATGTGTCCTTGTCGA
CGGACGATCCGCTCTTGCTGCATTACACCAAAGACCCTTTGGTGGAAGAA
TATAGTGTCGCTGCCCAAGTTTGGCGGTTGAGCAGCACGGACTTGTGCGA
GATGGCACGAAATAGTGTCTTGCAGAGTGGGTTTGAGGATATTTTTAAGA
GGCACTATTTGGGGAGGCATTATGATGCCCCGGGGGCGGCCGGGAACGAT
ATTCGACAGACAAATGTACCGGACATAAGAGTGAGGTATCGGCATGAAGT
CTGGCGCAACGAGATGGACATGGTGCTTTATTGTGATCGGGAGCCGGTGG
GGAAGTCGATGGGGGGGAGGGGAGAGAAAAAGCCGGGATGGACATTGGGG
TGAGGGTTCAGAGGG

protein sequence of jgi.p|Nanoce1779_2|577129

>mRNA_367-protein ID=mRNA_367-protein|Name=jgi.p|Nanoce1779_2|577129|organism=Nannochloropsis oceanica|type=polypeptide|length=883bp
MEENVEISSAEGTRSSICPALVNALHHDHDDHEADQMKESMHRDALFRSR
LLSSRHSFTQGLNGEEQLDGGGLAQIHLSSSPRSGLGIMTAGDRQDLDQG
IDTPQQQPQQQRQRQQFQQQQAPLPGPINDRGRSISFSSMSAEPATRPGS
GVAAGTSTAASEGPEERYSVRDLFPDYPEEFLPEMRDFQRVIISNTPEPV
DSDTMAACRQLRKAMMLRSKWMGVALDPDAPSSGPGLTISTCNGSTPAQN
YPESPIYNSCTPPAPSVPLPPHMLGRASPPPTAPPPPGSPDSPRTSAYKR
MKRRQAPPYEPFSYKPPGASSHLIKLVDGVYNVWEGEEGENGEKGGEVVT
KIFSVDEFYEDFHDLIHLLTCGPVKTYSYKRLQVLEARFHLHKLLNSDRE
LSAQKSVPHRDFYNIRKVDTHVHHSACMHLKHLLRFIKHKLKTAGGEIVA
FRDGQFLTLKEVFQSLKITAMDLSVDTLDMHANNTFHRFDRFNLKYNPAG
QSRLREIFLKTDNMIAGTYLAEVTQQVISDLNASKYQLVEWRVSIYGRKP
SEWDKLARWFYTSRLASDKIRWLIQIPRLYAVYKASGELENFEHLLRNIF
APLFEVTRNPGSNPPLAIFLNTIVGFDCVDDESKPEIHANQGQNFSTPKD
WQYKQDPPYSYWCYYIAANIKSLNNFRRVRGMSTFEFRPHCGEAGDPEHL
VAAYLLAEKINHGIVLRKIPGLQLLYYLSQIGMAMSPLSNNKLFLDYHRN
PFVKYFHQGLNVSLSTDDPLLLHYTKDPLVEEYSVAAQVWRLSSTDLCEM
ARNSVLQSGFEDIFKRHYLGRHYDAPGAAGNDIRQTNVPDIRVRYRHEVW
RNEMDMVLYCDREPVGKSMGGRGEKKPGWTLG*

mRNA from alignment at scaffold_3:915283..918147-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_367 ID=mRNA_367|Name=jgi.p|Nanoce1779_2|577129|organism=Nannochloropsis oceanica|type=mRNA|length=2865bp|location=Sequence derived from alignment at scaffold_3:915283..918147- (Nannochloropsis oceanica)
AGGGTCTCAAGAGCATGGGCGCTGGTTTGAGACTGGAGGTTGGAGCTGCA
TGTTTTTAACAGCCATCGATGCCTATGACGATTGGCCATAGATGGTGCGC
GAGACATCATCATTATTTATTATTCCGCTTCCCAGGACATTTCTCATGCC
TGTGAATCTCCCGCTCCCCTCACCACACCACATGATACACTGCCCTACTA
AGCCATGGAGGAGAATGTAGAAATATCAAGCGCGGAGGGCACCCGCAGTA
GCATATGTCCCGCTCTTGTCAACGCTCTCCACCACGACCATGACGACCAC
GAGGCGGACCAGATGAAGGAGTCCATGCACCGCGACGCCCTCTTTCGGTC
TAGGCTCTTGTCGTCCCGCCATTCCTTCACCCAGGGGTTGAATGGGGAGG
AGCAGTTGGACGGCGGCGGACTCGCACAAATCCACCTCAGCAGTAGCCCC
CGTTCAGGCCTCGGCATCATGACGGCGGGCGACCGACAGGACCTCGATCA
AGGAATCGACACTCCACAACAACAGCCGCAACAGCAGCGACAGCGACAGC
AGTTTCAGCAGCAGCAGGCCCCACTACCGGGGCCCATCAATGACCGCGGG
CGAAGTATCAGCTTCAGTAGCATGAGTGCGGAGCCGGCTACCCGACCTGG
GTCGGGGGTTGCGGCTGGCACCAGCACGGCCGCTTCAGAAGGCCCAGAGG
AACGCTACAGCGTGCGCGACCTCTTCCCAGACTATCCCGAGGAATTTCTG
CCTGAAATGCGGGATTTCCAACGCGTTATCATTTCAAATACCCCCGAGCC
TGTGGACAGCGACACCATGGCTGCCTGCCGACAACTTCGCAAGGCCATGA
TGCTTCGAAGCAAATGGATGGGCGTCGCCTTGGACCCCGATGCCCCTTCG
AGCGGACCCGGCCTAACGATCAGCACTTGCAACGGCAGTACCCCTGCACA
GAACTATCCAGAATCGCCCATCTACAACTCCTGCACTCCACCAGCGCCGT
CTGTGCCCTTACCGCCGCATATGTTGGGGCGTGCTTCCCCACCCCCCACC
GCCCCTCCTCCGCCGGGCTCCCCTGATTCCCCCCGAACCTCGGCATACAA
GCGGATGAAACGGCGACAAGCCCCGCCTTATGAGCCGTTTTCCTATAAGC
CGCCCGGGGCGTCCTCGCATCTGATAAAGTTGGTGGATGGTGTATACAAC
GTGTGGGAAGGGGAGGAGGGCGAGAATGGGGAGAAGGGCGGGGAGGTCGT
GACGAAGATTTTTAGCGTGGATGAATTCTATGAGGATTTTCACGATTTGA
TACATTTGTTGACTTGTGGGCCGGTGAAGACGTACAGCTACAAAAGACTG
CAGGTGCTGGAGGCGAGGTTTCACCTCCACAAGCTGTTGAACAGCGACCG
GGAGCTGTCGGCACAAAAATCGGTGCCCCACCGCGATTTCTATAACATTA
GAAAGGTAGACACACATGTGCATCATTCGGCGTGCATGCATTTGAAACAT
CTGTTGCGCTTTATCAAGCATAAGCTCAAGACGGCGGGTGGTGAGATCGT
GGCTTTTCGGGACGGGCAGTTCCTCACTCTAAAGGAAGTGTTTCAGTCTT
TGAAGATTACAGCGATGGACCTGTCGGTTGATACTCTGGACATGCACGCC
AACAATACTTTCCACCGTTTCGATCGCTTTAATTTGAAGTACAATCCGGC
GGGGCAGAGTCGGTTGAGAGAGATCTTCTTGAAGACCGATAATATGATCG
CCGGGACGTATTTGGCTGAGGTAACGCAGCAGGTAATCAGCGATTTAAAC
GCGAGTAAGTATCAGTTGGTGGAGTGGCGCGTGTCGATCTATGGTCGGAA
GCCCAGTGAATGGGATAAGCTCGCCCGATGGTTTTATACGTCTCGGCTGG
CCAGCGATAAGATACGGTGGTTGATCCAGATTCCCCGATTGTACGCCGTC
TACAAAGCCTCGGGGGAGCTGGAGAATTTCGAGCATTTGCTCCGCAATAT
CTTTGCGCCTCTCTTTGAAGTGACCAGAAATCCGGGCAGTAATCCCCCGT
TGGCGATCTTCTTGAATACCATCGTAGGGTTTGACTGTGTTGATGACGAA
AGCAAGCCGGAGATCCACGCGAATCAAGGGCAGAATTTCTCAACGCCTAA
GGATTGGCAGTACAAGCAGGACCCGCCTTATTCGTATTGGTGCTATTATA
TCGCAGCAAACATCAAAAGTTTGAACAATTTTAGACGGGTCAGGGGGATG
TCGACGTTCGAGTTTCGCCCGCATTGTGGGGAGGCGGGCGATCCCGAGCA
TCTTGTAGCAGCGTATTTGTTGGCGGAGAAGATTAACCATGGGATTGTCC
TTCGGAAAATTCCAGGATTGCAGCTATTGTACTATTTGAGTCAGATTGGC
ATGGCCATGTCGCCATTGAGTAACAACAAGTTGTTCTTGGATTATCATCG
GAATCCGTTTGTGAAGTATTTTCATCAGGGGTTGAATGTGTCCTTGTCGA
CGGACGATCCGCTCTTGCTGCATTACACCAAAGACCCTTTGGTGGAAGAA
TATAGTGTCGCTGCCCAAGTTTGGCGGTTGAGCAGCACGGACTTGTGCGA
GATGGCACGAAATAGTGTCTTGCAGAGTGGGTTTGAGGATATTTTTAAGA
GGCACTATTTGGGGAGGCATTATGATGCCCCGGGGGCGGCCGGGAACGAT
ATTCGACAGACAAATGTACCGGACATAAGAGTGAGGTATCGGCATGAAGT
CTGGCGCAACGAGATGGACATGGTGCTTTATTGTGATCGGGAGCCGGTGG
GGAAGTCGATGGGGGGGAGGGGAGAGAAAAAGCCGGGATGGACATTGGGG
TGAGGGTTCAGAGGG

Coding sequence (CDS) from alignment at scaffold_3:915283..918147-

>mRNA_367 ID=mRNA_367|Name=jgi.p|Nanoce1779_2|577129|organism=Nannochloropsis oceanica|type=CDS|length=2649bp|location=Sequence derived from alignment at scaffold_3:915283..918147- (Nannochloropsis oceanica)
ATGGAGGAGAATGTAGAAATATCAAGCGCGGAGGGCACCCGCAGTAGCAT
ATGTCCCGCTCTTGTCAACGCTCTCCACCACGACCATGACGACCACGAGG
CGGACCAGATGAAGGAGTCCATGCACCGCGACGCCCTCTTTCGGTCTAGG
CTCTTGTCGTCCCGCCATTCCTTCACCCAGGGGTTGAATGGGGAGGAGCA
GTTGGACGGCGGCGGACTCGCACAAATCCACCTCAGCAGTAGCCCCCGTT
CAGGCCTCGGCATCATGACGGCGGGCGACCGACAGGACCTCGATCAAGGA
ATCGACACTCCACAACAACAGCCGCAACAGCAGCGACAGCGACAGCAGTT
TCAGCAGCAGCAGGCCCCACTACCGGGGCCCATCAATGACCGCGGGCGAA
GTATCAGCTTCAGTAGCATGAGTGCGGAGCCGGCTACCCGACCTGGGTCG
GGGGTTGCGGCTGGCACCAGCACGGCCGCTTCAGAAGGCCCAGAGGAACG
CTACAGCGTGCGCGACCTCTTCCCAGACTATCCCGAGGAATTTCTGCCTG
AAATGCGGGATTTCCAACGCGTTATCATTTCAAATACCCCCGAGCCTGTG
GACAGCGACACCATGGCTGCCTGCCGACAACTTCGCAAGGCCATGATGCT
TCGAAGCAAATGGATGGGCGTCGCCTTGGACCCCGATGCCCCTTCGAGCG
GACCCGGCCTAACGATCAGCACTTGCAACGGCAGTACCCCTGCACAGAAC
TATCCAGAATCGCCCATCTACAACTCCTGCACTCCACCAGCGCCGTCTGT
GCCCTTACCGCCGCATATGTTGGGGCGTGCTTCCCCACCCCCCACCGCCC
CTCCTCCGCCGGGCTCCCCTGATTCCCCCCGAACCTCGGCATACAAGCGG
ATGAAACGGCGACAAGCCCCGCCTTATGAGCCGTTTTCCTATAAGCCGCC
CGGGGCGTCCTCGCATCTGATAAAGTTGGTGGATGGTGTATACAACGTGT
GGGAAGGGGAGGAGGGCGAGAATGGGGAGAAGGGCGGGGAGGTCGTGACG
AAGATTTTTAGCGTGGATGAATTCTATGAGGATTTTCACGATTTGATACA
TTTGTTGACTTGTGGGCCGGTGAAGACGTACAGCTACAAAAGACTGCAGG
TGCTGGAGGCGAGGTTTCACCTCCACAAGCTGTTGAACAGCGACCGGGAG
CTGTCGGCACAAAAATCGGTGCCCCACCGCGATTTCTATAACATTAGAAA
GGTAGACACACATGTGCATCATTCGGCGTGCATGCATTTGAAACATCTGT
TGCGCTTTATCAAGCATAAGCTCAAGACGGCGGGTGGTGAGATCGTGGCT
TTTCGGGACGGGCAGTTCCTCACTCTAAAGGAAGTGTTTCAGTCTTTGAA
GATTACAGCGATGGACCTGTCGGTTGATACTCTGGACATGCACGCCAACA
ATACTTTCCACCGTTTCGATCGCTTTAATTTGAAGTACAATCCGGCGGGG
CAGAGTCGGTTGAGAGAGATCTTCTTGAAGACCGATAATATGATCGCCGG
GACGTATTTGGCTGAGGTAACGCAGCAGGTAATCAGCGATTTAAACGCGA
GTAAGTATCAGTTGGTGGAGTGGCGCGTGTCGATCTATGGTCGGAAGCCC
AGTGAATGGGATAAGCTCGCCCGATGGTTTTATACGTCTCGGCTGGCCAG
CGATAAGATACGGTGGTTGATCCAGATTCCCCGATTGTACGCCGTCTACA
AAGCCTCGGGGGAGCTGGAGAATTTCGAGCATTTGCTCCGCAATATCTTT
GCGCCTCTCTTTGAAGTGACCAGAAATCCGGGCAGTAATCCCCCGTTGGC
GATCTTCTTGAATACCATCGTAGGGTTTGACTGTGTTGATGACGAAAGCA
AGCCGGAGATCCACGCGAATCAAGGGCAGAATTTCTCAACGCCTAAGGAT
TGGCAGTACAAGCAGGACCCGCCTTATTCGTATTGGTGCTATTATATCGC
AGCAAACATCAAAAGTTTGAACAATTTTAGACGGGTCAGGGGGATGTCGA
CGTTCGAGTTTCGCCCGCATTGTGGGGAGGCGGGCGATCCCGAGCATCTT
GTAGCAGCGTATTTGTTGGCGGAGAAGATTAACCATGGGATTGTCCTTCG
GAAAATTCCAGGATTGCAGCTATTGTACTATTTGAGTCAGATTGGCATGG
CCATGTCGCCATTGAGTAACAACAAGTTGTTCTTGGATTATCATCGGAAT
CCGTTTGTGAAGTATTTTCATCAGGGGTTGAATGTGTCCTTGTCGACGGA
CGATCCGCTCTTGCTGCATTACACCAAAGACCCTTTGGTGGAAGAATATA
GTGTCGCTGCCCAAGTTTGGCGGTTGAGCAGCACGGACTTGTGCGAGATG
GCACGAAATAGTGTCTTGCAGAGTGGGTTTGAGGATATTTTTAAGAGGCA
CTATTTGGGGAGGCATTATGATGCCCCGGGGGCGGCCGGGAACGATATTC
GACAGACAAATGTACCGGACATAAGAGTGAGGTATCGGCATGAAGTCTGG
CGCAACGAGATGGACATGGTGCTTTATTGTGATCGGGAGCCGGTGGGGAA
GTCGATGGGGGGGAGGGGAGAGAAAAAGCCGGGATGGACATTGGGGTGA

Synonyms

Publications