jgi.p|Nanoce1779_2|369754, mRNA_3665 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|369754
Unique NamemRNA_3665
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length712
Alignment locationscaffold_6:905739..906728 +

Link to JBrowse

Properties
Property NameValue
TranscriptId369840
TrackFilteredModels2
ProteinId369754
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:905739..906728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|369754gene_3665Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|369754mRNA_3665-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3665CDS_3665Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3665 ID=mRNA_3665|Name=jgi.p|Nanoce1779_2|369754|organism=Nannochloropsis oceanica|type=mRNA|length=712bp
TACAGGGAGTCTACCTCTCTCGTCTTTTCCTGTTCGCTTGGGACCAAAAG
CAAGAAGAACAGTTAGCTGAAGCGGAAGGAAGACGACGAGAATCATGCGT
GTCTTCCGACGCAGCGACAACTTCGTGCTGGCCGCCGCAACGGCAGGGAT
GCTGGTGTTCCTCGCAGGACACACCCACGCCCAGGCCGGAAACATTGTCA
ATGGGGAGGAAGTCGGGGCCGCTGTCGGCAATGCCGTCACTGGCGCAGTC
GGTACTGCCATGGAAAATTCAGGAACTAACCCCACCACCAGCTCCATTAC
TGAAGGCGAGATCTTCCCCCTTCCCAAAATTGAGGACATGGCCTCGGTCT
TGCTCTCTTCTTCAGGGGATCAATGGAAAAGTACGCGCAGAACTTTGGTG
GGCTCGCGGATGCGAATGCCAATACTGTGTTTAACACGGCGGTGCCCGGG
GAGACGGGAGATCCAATTTCTTTGGTGACGATGGCGCTAGGTTCGGACGT
CAATAAACAGATTGGGGATATCAAGGACGTAGTGGGCATGGCACTAGGCC
TTGACCCCGAGAAGAACATGAAGGAAGCCATGCTGAATCCCGCTTTTCTG
GTCAAGACGATGGCGGGCGCCATCATGGGGGACACAGGGGCGATCGAGAA
GGACTGTGCCTGGACTGCCTCGGCGGACTATGAGACCGCCAACTTGTTTT
TCCCCGACGCGC
back to top

protein sequence of jgi.p|Nanoce1779_2|369754

>mRNA_3665-protein ID=mRNA_3665-protein|Name=jgi.p|Nanoce1779_2|369754|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MRVFRRSDNFVLAAATAGMLVFLAGHTHAQAGNIVNGEEVGAAVGNAVTG
AVGTAMENSGTNPTTSSITEGEIFPLPKIEDMASVLLSSSGDQWKSTRRT
LVGSRMRMPILCLTRRCPGRREIQFLW*
back to top

mRNA from alignment at scaffold_6:905739..906728+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3665 ID=mRNA_3665|Name=jgi.p|Nanoce1779_2|369754|organism=Nannochloropsis oceanica|type=mRNA|length=990bp|location=Sequence derived from alignment at scaffold_6:905739..906728+ (Nannochloropsis oceanica)
TACAGGGAGTCTACCTCTCTCGTCTTTTCCTGTTCGCTTGGGACCAAAAG
CAAGAAGAACAGTTAGCTGAAGCGGAAGGAAGACGACGAGAATCATGCGT
GTCTTCCGACGCAGCGACAACTTCGTGCTGGCCGCCGCAACGGCAGGGAT
GCTGGTGTTCCTCGCAGGACACACCCACGCCCAGGCCGGAAACATTGTCA
ATGGGGAGGAAGTCGGGGCCGCTGTCGGCAATGCCGTCACTGGCGCAGTC
GGTACTGCCATGGAAAATTCAGGAACTAACCCCACCACCAGCTCCATTAC
TGAAGGCGAGATCTTCCCCCTTCCCAAAATTGAGGACATGGCCTCGGTCT
TGCTCTCTTCTTCAGGGATCGCTGATGAGCTAAAGGCCGCGAGCCTTGAG
CCTACGGGGGGTTTCGGTTCCAACTCTGAAGTGTGGTCTGCTTTTCTGAA
CGCAGCCCGGAATGGCTTGGAAGGGGGATCAATGGAAAAGTACGCGCAGA
ACTTTGGTGGGCTCGCGGATGCGAATGCCAATACTGTGTTTAACACGGCG
GTGCCCGGGGAGACGGGAGATCCAATTTCTTTGGTGACGATGGCGCTAGG
TTCGGACGTCAATAAACAGATTGGGGATGTGAGTAGTAGAAGGAGTGGTG
GTGTGGGCGGGTAGTAGGAAGGGGGGTCGAAAGGTTATGTTTGTATATAT
GTGACTCCACAGGTCTGCGGTACACTGCGGTAAAGTGGGAATTCGTATTA
TTATGATTCCTACTCGCAACTCATCTCCTCCCTTTTTTCTTTCGCAGATC
AAGGACGTAGTGGGCATGGCACTAGGCCTTGACCCCGAGAAGAACATGAA
GGAAGCCATGCTGAATCCCGCTTTTCTGGTCAAGACGATGGCGGGCGCCA
TCATGGGGGACACAGGGGCGATCGAGAAGGACTGTGCCTGGACTGCCTCG
GCGGACTATGAGACCGCCAACTTGTTTTTCCCCGACGCGC
back to top

Coding sequence (CDS) from alignment at scaffold_6:905739..906728+

>mRNA_3665 ID=mRNA_3665|Name=jgi.p|Nanoce1779_2|369754|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_6:905739..906728+ (Nannochloropsis oceanica)
ATGCGTGTCTTCCGACGCAGCGACAACTTCGTGCTGGCCGCCGCAACGGC
AGGGATGCTGGTGTTCCTCGCAGGACACACCCACGCCCAGGCCGGAAACA
TTGTCAATGGGGAGGAAGTCGGGGCCGCTGTCGGCAATGCCGTCACTGGC
GCAGTCGGTACTGCCATGGAAAATTCAGGAACTAACCCCACCACCAGCTC
CATTACTGAAGGCGAGATCTTCCCCCTTCCCAAAATTGAGGACATGGCCT
CGGTCTTGCTCTCTTCTTCAGGGGATCAATGGAAAAGTACGCGCAGAACT
TTGGTGGGCTCGCGGATGCGAATGCCAATACTGTGTTTAACACGGCGGTG
CCCGGGGAGACGGGAGATCCAATTTCTTTGGTGAATGCGTGTCTTCCGAC
GCAGCGACAACTTCGTGCTGGCCGCCGCAACGGCAGGGATGCTGGTGTTC
CTCGCAGGACACACCCACGCCCAGGCCGGAAACATTGTCAATGGGGAGGA
AGTCGGGGCCGCTGTCGGCAATGCCGTCACTGGCGCAGTCGGTACTGCCA
TGGAAAATTCAGGAACTAACCCCACCACCAGCTCCATTACTGAAGGCGAG
ATCTTCCCCCTTCCCAAAATTGAGGACATGGCCTCGGTCTTGCTCTCTTC
TTCAGGGGATCAATGGAAAAGTACGCGCAGAACTTTGGTGGGCTCGCGGA
TGCGAATGCCAATACTGTGTTTAACACGGCGGTGCCCGGGGAGACGGGAG
ATCCAATTTCTTTGGTGA
back to top
Synonyms
Publications