jgi.p|Nanoce1779_2|582941, mRNA_3663 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582941
Unique NamemRNA_3663
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length3896
Alignment locationscaffold_6:898727..902622 -

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Properties
Property NameValue
TranscriptId583027
TrackFilteredModels2
ProteinId582941
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:898727..902622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582941gene_3663Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582941mRNA_3663-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3663CDS_3663Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3663 ID=mRNA_3663|Name=jgi.p|Nanoce1779_2|582941|organism=Nannochloropsis oceanica|type=mRNA|length=3896bp
CAGAATAAAGGGGTTGTGGCGGCGGCTGCCAATATTACCACCAGTGCAGG
CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAACAACA
GCAGTTTTAGCAGCAGACGGGGGAAGCGAGGCTTCTTCCTTATTGATGGT
GGCTATTACGAGTGGCTGCAGTGGCACATTCTTCAAGGCCGCATCGCCAC
GCACGCGATCGACGTCCGTCTGTTAGTGCAGCGCCTGGAAAATATGCTGG
GTTTGTCCTTTGTCCGGCGGCTCTACGTCCAGAGCACCGAGACGGGCGCC
CTTGGGAATTTCCACAAAATGCTTGAGGCAACTGCGGGATTCGAGGTTGA
ACTACATCGTCTAAGAGACTCACCCTCTTTGCCATCACATCGTGGCGTAG
GCGTGGCGATGACAGCCCACGTGTTGAGCTCGACTTTTAAAGCTGATTTT
GGTGCACTGGTGGTGCTGACAGGAGGGGCTTCGGATCTTGTTCCAGCTTT
TCGGATGGCACGAGCGGAGAACGATAGTCGCTACCGTATGCGGCAACGGG
TGCAGGAAGTGGTGGTTTTGGGCGGAACCCATATCAGCCCCGCCTTTTTT
CCTTATCTTTATCGGCCTGTGGACGGGTCGGCATTCATTTTCGAGAGCCT
CATGGCCGCGTGCGTTGTGCCCAAGAGTGAGTTGGGGCGTGGGACGGGCA
GTCTTTCAATCTCTTCGTCGTCCTACCTCTCCCTGAGGCGCAAAGCCCGC
TCACTCTCGCCGCCTATGGCCCGCTCAGGACAGTCCAAGAGGGGCCTTGA
AAACAGTATTTCTTCTCCACCTCTTCCTTCTTCTGAAGCACCCGCCGAGG
GCTTTCCGGTTTACTCCCCCTCTTTTCAGCAACTAGATAATCGCAACCCT
ACGGCGTACAGTATGGGCAGACTTGCGGGTAGCCCTCGCCATTCTGCGAC
CACGAGTGACGTAAGTCTCAATCTGAGCCTGAGCAACAGCAACAGCAGCG
GTAGCGGTAGTGGGAGTTGTGGCAGCAGCGTTAGCGTTGGCGTTGCGGGT
GTTGGGGGTCGTCCTCGGCGATGGTGCAATTTTGGGCATCGCTGCAAATA
TTTTGAGGATGTAGAGACTAATTTCGTGCATTTTCAGCGCTTTGCACACG
TGTGCCAGCATGACACTCAGTGCCCTTTCGTTCTGAACTATGCCGTGCAC
CGGTCGACAGAGGAAGGGAGGGCGCATTTTCTCATGTGGAAGCACTCGTG
TCCGCATGGCTTGGATTGCCAGTACTTCGCGCAGCCTGACAAACACCGCC
GACACATCGAGTTTTTTACACATAAGGCTAAGGTTCTCAATGCGGCGGCC
GCAGCCGTGGCTCAACAGCAACAGCAGCAGCAGCAGCAACAACAACAACA
ACAACAGGCACAGCAGCAGCAGCAGGCGCACCAGCGTCAGCGACTGGTGC
TCCAGGACCACCATCTTGCCGCCTTGTCCCTTTCTCCACCGGCCTCCCCC
CTCCATGCCATGGCTCCTAGAACACCGCTATCCTTGCCTGCCAGTCTGAA
TGAGACGGAGTCGTTGCTCAGCCGATTCGCCGGGGATTGGGACCCGGAGA
TGGTTTCCCAAATGCTACAACAGCATAATCAGCAGCAGAGCCACTATCAC
CACCACCAACAGCAGATTCTGATTCCCCGACCGCCTAGGCTGCACACACA
ACACTCCTCCACCCTCACCCACTCCTCCACTTCTTCTGATACCCAGAACT
ACCCCCTGCTTGTTTCGGGTAGCTCGGGCGTGGAAGACGAGGTGAGTAGC
CAGAGTAGTTCTAGCGCGGCCACCAGCCCTTCGATGTCCCCAAATACTGG
CACATCGAACTTCTGGTAGTATGGGCTGTGTGTGGATATATTATTCGTTT
GGCTGATGATCTAGATAGTTAAGGAATGCTTTTGTGGTAATTCCAGCCAG
GAACAAGAACAAGGAATGGCGTGGGGGCCGGTTTATTGAATGGATTTTCA
AACGAATTGACAGGAAGATGAGCGAGTATTTGTGGTCATTTTGTAGATAC
GTCATAATAGGATTTTTAATATGATATGAACACTGTGGTTTTGTTTCGTC
CTTCGTGGTAGACTTCATTGAGACCTTGCGAGGAGAAGCATACATCGCGA
GGGAAAACTCAAAGCAATCTTCCTCACACCAAACAAGGCTGCTTTGAAAT
TCACACGCATTCCGAATCGCAAATACGGACATAGAAGAGAGGAAGGGAGG
AAAGTAGCATTCTGGCTACATTACAAAATTTAGCATGACTCAAATTATCA
TAGGATAAAGATTGAGTCAAGCACATTACCTCAAACACAACACAATTCTT
TCCCTTCAAAATGATGGAAAAGAAAATGCGTTATCCAAAGTACGGTTTTA
CAAAAGAAGATAAACCTAACACAAGCATGACATAGAGAGATGACGGCATG
GTCCGCAAATGAAGCGTGTCCTCCACCTTCTTTCGGTGTAATCCAATAAA
CATGAGAGAAACCTTTACTCCCAGGAGGAAAAAGTCTGAGAAAGCTTTGA
TGTTTTTTCAGTCCCATGAGATTCCACCAGCTTTCAAGCAAAGGTTGTCA
GCACGTAGCAAAATAGATGACATGAAGAACTGATATATAGCAAAAATTAA
GAGAAAAATACGATACCAAAATTTGCACAAGGTAGCTTTTCATTTGGTTT
CCTCATTTTTGGCATATAACACACGTAGTGCCAGACAAACACGGAAACAC
AAGAGCAACCGATCTATACGCCGACCAACCACGACGGTTGGGCCGAGTCA
CGGCTCCCACTATTCCCCTTGCCCACCACTGAGTACTGAGCCTGGTGGGT
TTGGGGATTCCAGGTCTCGGCGGGCGAGCGCGTGGAGTGAGGTGTCGCTA
CCTTTGCCCCCATCATAAGTGGATTGGTGCCAGGGGAGCTGCTTGCACGA
TAGCTGTTGTTGCGGACGTTCCCGGCTAGGTGGTGATTGTTGTAGCCGCC
CACAAGCTGGACCTCAACTTCTTCAGCGTCGTTATTGTCATTGTAGTGGG
CAAGGCGCCACAAAGTGAGAGCGAGGAAGAGAGCGAGCACCGCTGAGCTC
AACACGGCAATCCACGCGTAGTAAAGACCCACGACCCTCAAGCCGTCTCC
CGTTTGTTTCACGCAACCATCGACAGTGCAAAAGACGTGGAAAGCATCAG
GACGAATTAATTTCCAAGCAATCGCGGCAAGGGAACTAAAGATGCACTGA
GGAATGGCAGCATAAGCCGAATACCGCATGTACTTGGAGTTCCCGTCCGC
AGTACGCGCACATTTTGCCCTAAGGTGAGCAAGGAAGACACCCATCCCAG
TTACAGTAGCCACAGCCATACAGCATTGCACGAGAAGAAGGAGGGTGTAG
GGCAAGATGTCGCCTCCCTGGGCCATATTCCAGCTTGCGTACCCAACTGT
GACATGGCTCGTGGTCAGATCATACGCCACATCCCGCAATCCATATCCAG
CCTCGATGGTCTGATGATACGTCTGCCCATCCACTTCGTGGGTTCCTTGA
AAGTGCGCCCGCTGCCAGCCATGCGACGTCAAGCCCACCCACAAAAGACC
AAAGGAGATAACCCACAGCGTCCGTGCGGTCCGCTGCAGATTCAGTTCTT
GGGGTGTCAACTCGTGGGGCTTGGGCGGAAGGGGAGGGCCAGCCTGAGCC
TTAGCAGCAACATAGCTGGGAAGCGCGCTTAAGGTGGCAGCACTGGAGCT
CAAGGCACTCTTGGCCATGTGCGCAGCGCCAGCAGCCGCGGCCTTGGCCT
GCATGGCTTGCATCACGCCGTGTCTGTGCGGGGAATCCATTATGTTGAGG
TCGGTTTCTGAGTTTCAGACGCTAAAAAAGCGGCATATTCTGGTCT
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protein sequence of jgi.p|Nanoce1779_2|582941

>mRNA_3663-protein ID=mRNA_3663-protein|Name=jgi.p|Nanoce1779_2|582941|organism=Nannochloropsis oceanica|type=polypeptide|length=542bp
MLGLSFVRRLYVQSTETGALGNFHKMLEATAGFEVELHRLRDSPSLPSHR
GVGVAMTAHVLSSTFKADFGALVVLTGGASDLVPAFRMARAENDSRYRMR
QRVQEVVVLGGTHISPAFFPYLYRPVDGSAFIFESLMAACVVPKSELGRG
TGSLSISSSSYLSLRRKARSLSPPMARSGQSKRGLENSISSPPLPSSEAP
AEGFPVYSPSFQQLDNRNPTAYSMGRLAGSPRHSATTSDVSLNLSLSNSN
SSGSGSGSCGSSVSVGVAGVGGRPRRWCNFGHRCKYFEDVETNFVHFQRF
AHVCQHDTQCPFVLNYAVHRSTEEGRAHFLMWKHSCPHGLDCQYFAQPDK
HRRHIEFFTHKAKVLNAAAAAVAQQQQQQQQQQQQQQQAQQQQQAHQRQR
LVLQDHHLAALSLSPPASPLHAMAPRTPLSLPASLNETESLLSRFAGDWD
PEMVSQMLQQHNQQQSHYHHHQQQILIPRPPRLHTQHSSTLTHSSTSSDT
QNYPLLVSGSSGVEDEVSSQSSSSAATSPSMSPNTGTSNFW*
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mRNA from alignment at scaffold_6:898727..902622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3663 ID=mRNA_3663|Name=jgi.p|Nanoce1779_2|582941|organism=Nannochloropsis oceanica|type=mRNA|length=3896bp|location=Sequence derived from alignment at scaffold_6:898727..902622- (Nannochloropsis oceanica)
CAGAATAAAGGGGTTGTGGCGGCGGCTGCCAATATTACCACCAGTGCAGG CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGCAACAACAACA GCAGTTTTAGCAGCAGACGGGGGAAGCGAGGCTTCTTCCTTATTGATGGT GGCTATTACGAGTGGCTGCAGTGGCACATTCTTCAAGGCCGCATCGCCAC GCACGCGATCGACGTCCGTCTGTTAGTGCAGCGCCTGGAAAATATGCTGG GTTTGTCCTTTGTCCGGCGGCTCTACGTCCAGAGCACCGAGACGGGCGCC CTTGGGAATTTCCACAAAATGCTTGAGGCAACTGCGGGATTCGAGGTTGA ACTACATCGTCTAAGAGACTCACCCTCTTTGCCATCACATCGTGGCGTAG GCGTGGCGATGACAGCCCACGTGTTGAGCTCGACTTTTAAAGCTGATTTT GGTGCACTGGTGGTGCTGACAGGAGGGGCTTCGGATCTTGTTCCAGCTTT TCGGATGGCACGAGCGGAGAACGATAGTCGCTACCGTATGCGGCAACGGG TGCAGGAAGTGGTGGTTTTGGGCGGAACCCATATCAGCCCCGCCTTTTTT CCTTATCTTTATCGGCCTGTGGACGGGTCGGCATTCATTTTCGAGAGCCT CATGGCCGCGTGCGTTGTGCCCAAGAGTGAGTTGGGGCGTGGGACGGGCA GTCTTTCAATCTCTTCGTCGTCCTACCTCTCCCTGAGGCGCAAAGCCCGC TCACTCTCGCCGCCTATGGCCCGCTCAGGACAGTCCAAGAGGGGCCTTGA AAACAGTATTTCTTCTCCACCTCTTCCTTCTTCTGAAGCACCCGCCGAGG GCTTTCCGGTTTACTCCCCCTCTTTTCAGCAACTAGATAATCGCAACCCT ACGGCGTACAGTATGGGCAGACTTGCGGGTAGCCCTCGCCATTCTGCGAC CACGAGTGACGTAAGTCTCAATCTGAGCCTGAGCAACAGCAACAGCAGCG GTAGCGGTAGTGGGAGTTGTGGCAGCAGCGTTAGCGTTGGCGTTGCGGGT GTTGGGGGTCGTCCTCGGCGATGGTGCAATTTTGGGCATCGCTGCAAATA TTTTGAGGATGTAGAGACTAATTTCGTGCATTTTCAGCGCTTTGCACACG TGTGCCAGCATGACACTCAGTGCCCTTTCGTTCTGAACTATGCCGTGCAC CGGTCGACAGAGGAAGGGAGGGCGCATTTTCTCATGTGGAAGCACTCGTG TCCGCATGGCTTGGATTGCCAGTACTTCGCGCAGCCTGACAAACACCGCC GACACATCGAGTTTTTTACACATAAGGCTAAGGTTCTCAATGCGGCGGCC GCAGCCGTGGCTCAACAGCAACAGCAGCAGCAGCAGCAACAACAACAACA ACAACAGGCACAGCAGCAGCAGCAGGCGCACCAGCGTCAGCGACTGGTGC TCCAGGACCACCATCTTGCCGCCTTGTCCCTTTCTCCACCGGCCTCCCCC CTCCATGCCATGGCTCCTAGAACACCGCTATCCTTGCCTGCCAGTCTGAA TGAGACGGAGTCGTTGCTCAGCCGATTCGCCGGGGATTGGGACCCGGAGA TGGTTTCCCAAATGCTACAACAGCATAATCAGCAGCAGAGCCACTATCAC CACCACCAACAGCAGATTCTGATTCCCCGACCGCCTAGGCTGCACACACA ACACTCCTCCACCCTCACCCACTCCTCCACTTCTTCTGATACCCAGAACT ACCCCCTGCTTGTTTCGGGTAGCTCGGGCGTGGAAGACGAGGTGAGTAGC CAGAGTAGTTCTAGCGCGGCCACCAGCCCTTCGATGTCCCCAAATACTGG CACATCGAACTTCTGGTAGTATGGGCTGTGTGTGGATATATTATTCGTTT GGCTGATGATCTAGATAGTTAAGGAATGCTTTTGTGGTAATTCCAGCCAG GAACAAGAACAAGGAATGGCGTGGGGGCCGGTTTATTGAATGGATTTTCA AACGAATTGACAGGAAGATGAGCGAGTATTTGTGGTCATTTTGTAGATAC GTCATAATAGGATTTTTAATATGATATGAACACTGTGGTTTTGTTTCGTC CTTCGTGGTAGACTTCATTGAGACCTTGCGAGGAGAAGCATACATCGCGA GGGAAAACTCAAAGCAATCTTCCTCACACCAAACAAGGCTGCTTTGAAAT TCACACGCATTCCGAATCGCAAATACGGACATAGAAGAGAGGAAGGGAGG AAAGTAGCATTCTGGCTACATTACAAAATTTAGCATGACTCAAATTATCA TAGGATAAAGATTGAGTCAAGCACATTACCTCAAACACAACACAATTCTT TCCCTTCAAAATGATGGAAAAGAAAATGCGTTATCCAAAGTACGGTTTTA CAAAAGAAGATAAACCTAACACAAGCATGACATAGAGAGATGACGGCATG GTCCGCAAATGAAGCGTGTCCTCCACCTTCTTTCGGTGTAATCCAATAAA CATGAGAGAAACCTTTACTCCCAGGAGGAAAAAGTCTGAGAAAGCTTTGA TGTTTTTTCAGTCCCATGAGATTCCACCAGCTTTCAAGCAAAGGTTGTCA GCACGTAGCAAAATAGATGACATGAAGAACTGATATATAGCAAAAATTAA GAGAAAAATACGATACCAAAATTTGCACAAGGTAGCTTTTCATTTGGTTT CCTCATTTTTGGCATATAACACACGTAGTGCCAGACAAACACGGAAACAC AAGAGCAACCGATCTATACGCCGACCAACCACGACGGTTGGGCCGAGTCA CGGCTCCCACTATTCCCCTTGCCCACCACTGAGTACTGAGCCTGGTGGGT TTGGGGATTCCAGGTCTCGGCGGGCGAGCGCGTGGAGTGAGGTGTCGCTA CCTTTGCCCCCATCATAAGTGGATTGGTGCCAGGGGAGCTGCTTGCACGA TAGCTGTTGTTGCGGACGTTCCCGGCTAGGTGGTGATTGTTGTAGCCGCC CACAAGCTGGACCTCAACTTCTTCAGCGTCGTTATTGTCATTGTAGTGGG CAAGGCGCCACAAAGTGAGAGCGAGGAAGAGAGCGAGCACCGCTGAGCTC AACACGGCAATCCACGCGTAGTAAAGACCCACGACCCTCAAGCCGTCTCC CGTTTGTTTCACGCAACCATCGACAGTGCAAAAGACGTGGAAAGCATCAG GACGAATTAATTTCCAAGCAATCGCGGCAAGGGAACTAAAGATGCACTGA GGAATGGCAGCATAAGCCGAATACCGCATGTACTTGGAGTTCCCGTCCGC AGTACGCGCACATTTTGCCCTAAGGTGAGCAAGGAAGACACCCATCCCAG TTACAGTAGCCACAGCCATACAGCATTGCACGAGAAGAAGGAGGGTGTAG GGCAAGATGTCGCCTCCCTGGGCCATATTCCAGCTTGCGTACCCAACTGT GACATGGCTCGTGGTCAGATCATACGCCACATCCCGCAATCCATATCCAG CCTCGATGGTCTGATGATACGTCTGCCCATCCACTTCGTGGGTTCCTTGA AAGTGCGCCCGCTGCCAGCCATGCGACGTCAAGCCCACCCACAAAAGACC AAAGGAGATAACCCACAGCGTCCGTGCGGTCCGCTGCAGATTCAGTTCTT GGGGTGTCAACTCGTGGGGCTTGGGCGGAAGGGGAGGGCCAGCCTGAGCC TTAGCAGCAACATAGCTGGGAAGCGCGCTTAAGGTGGCAGCACTGGAGCT CAAGGCACTCTTGGCCATGTGCGCAGCGCCAGCAGCCGCGGCCTTGGCCT GCATGGCTTGCATCACGCCGTGTCTGTGCGGGGAATCCATTATGTTGAGG TCGGTTTCTGAGTTTCAGACGCTAAAAAAGCGGCATATTCTGGTCT
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Coding sequence (CDS) from alignment at scaffold_6:898727..902622-

>mRNA_3663 ID=mRNA_3663|Name=jgi.p|Nanoce1779_2|582941|organism=Nannochloropsis oceanica|type=CDS|length=1626bp|location=Sequence derived from alignment at scaffold_6:898727..902622- (Nannochloropsis oceanica)
ATGCTGGGTTTGTCCTTTGTCCGGCGGCTCTACGTCCAGAGCACCGAGAC
GGGCGCCCTTGGGAATTTCCACAAAATGCTTGAGGCAACTGCGGGATTCG
AGGTTGAACTACATCGTCTAAGAGACTCACCCTCTTTGCCATCACATCGT
GGCGTAGGCGTGGCGATGACAGCCCACGTGTTGAGCTCGACTTTTAAAGC
TGATTTTGGTGCACTGGTGGTGCTGACAGGAGGGGCTTCGGATCTTGTTC
CAGCTTTTCGGATGGCACGAGCGGAGAACGATAGTCGCTACCGTATGCGG
CAACGGGTGCAGGAAGTGGTGGTTTTGGGCGGAACCCATATCAGCCCCGC
CTTTTTTCCTTATCTTTATCGGCCTGTGGACGGGTCGGCATTCATTTTCG
AGAGCCTCATGGCCGCGTGCGTTGTGCCCAAGAGTGAGTTGGGGCGTGGG
ACGGGCAGTCTTTCAATCTCTTCGTCGTCCTACCTCTCCCTGAGGCGCAA
AGCCCGCTCACTCTCGCCGCCTATGGCCCGCTCAGGACAGTCCAAGAGGG
GCCTTGAAAACAGTATTTCTTCTCCACCTCTTCCTTCTTCTGAAGCACCC
GCCGAGGGCTTTCCGGTTTACTCCCCCTCTTTTCAGCAACTAGATAATCG
CAACCCTACGGCGTACAGTATGGGCAGACTTGCGGGTAGCCCTCGCCATT
CTGCGACCACGAGTGACGTAAGTCTCAATCTGAGCCTGAGCAACAGCAAC
AGCAGCGGTAGCGGTAGTGGGAGTTGTGGCAGCAGCGTTAGCGTTGGCGT
TGCGGGTGTTGGGGGTCGTCCTCGGCGATGGTGCAATTTTGGGCATCGCT
GCAAATATTTTGAGGATGTAGAGACTAATTTCGTGCATTTTCAGCGCTTT
GCACACGTGTGCCAGCATGACACTCAGTGCCCTTTCGTTCTGAACTATGC
CGTGCACCGGTCGACAGAGGAAGGGAGGGCGCATTTTCTCATGTGGAAGC
ACTCGTGTCCGCATGGCTTGGATTGCCAGTACTTCGCGCAGCCTGACAAA
CACCGCCGACACATCGAGTTTTTTACACATAAGGCTAAGGTTCTCAATGC
GGCGGCCGCAGCCGTGGCTCAACAGCAACAGCAGCAGCAGCAGCAACAAC
AACAACAACAACAGGCACAGCAGCAGCAGCAGGCGCACCAGCGTCAGCGA
CTGGTGCTCCAGGACCACCATCTTGCCGCCTTGTCCCTTTCTCCACCGGC
CTCCCCCCTCCATGCCATGGCTCCTAGAACACCGCTATCCTTGCCTGCCA
GTCTGAATGAGACGGAGTCGTTGCTCAGCCGATTCGCCGGGGATTGGGAC
CCGGAGATGGTTTCCCAAATGCTACAACAGCATAATCAGCAGCAGAGCCA
CTATCACCACCACCAACAGCAGATTCTGATTCCCCGACCGCCTAGGCTGC
ACACACAACACTCCTCCACCCTCACCCACTCCTCCACTTCTTCTGATACC
CAGAACTACCCCCTGCTTGTTTCGGGTAGCTCGGGCGTGGAAGACGAGGT
GAGTAGCCAGAGTAGTTCTAGCGCGGCCACCAGCCCTTCGATGTCCCCAA
ATACTGGCACATCGAACTTCTGGTAG
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Synonyms
Publications