jgi.p|Nanoce1779_2|582939, mRNA_3661 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582939
Unique Name	mRNA_3661
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1373
Alignment location	scaffold_6:897013..898533 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583025
Track	FilteredModels2
ProteinId	582939

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:897013..898533 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582939	gene_3661	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582939	mRNA_3661-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3661	CDS_3661	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:897013..898533+
coding sequence from alignment at scaffold_6:897013..898533+

mRNA sequence

>mRNA_3661 ID=mRNA_3661|Name=jgi.p|Nanoce1779_2|582939|organism=Nannochloropsis oceanica|type=mRNA|length=1373bp
GGGTCACAGACGATGTCCATTGGCGATCGTTTACTAGTGGAGACAACTCT
CTCACACCTATCCCTCCCTCCTTCCCTCTCTCTCTCCCTCCTGTCAACTG
AAAACCAGCAAGTCAAGGGGTATGGAACGCTGCTAATGAACCACCTTAAG
GAACAGGCCAAGCGCGAAGGCCTTAGGTACTTTCTGACTTACGCCGACAA
CTATGCCATCGGCTATTTCCGCAAACAAGGCTTCTCTAAGACGCTGGGCA
TGCCTCGCTCGCAGTGGACGGGCTATATCAAAGACTACGACGGAGCGCAC
CTCATGGAGTGCTACGTCCATCCCACCATCAACTACCTGGATATCCCTAA
TATGATCGCCCGTCAACGTGCCTTCATCCACGCCCGCCTCAAGGAAAAAG
CGAAGTCTCACGTGGTCTACCCCGGGCTCGCCTGCTTCAAAGCTCTGAAG
GAGGGAAAGAAGGAAGGAGGGCGGGTGAAGGATGTGATGACCGTCCCGGG
CGTAAGGGAAGCCGGGTGGAACTTGAGTCAGCTTTCGTCGGTGAGCCAGA
GAGATATAGATCGAGAGAGGGTGGCTTTGCAGTCGTTTTTGAGCAATGTG
TTAAGAGAAGTGTTTAACCATCGGGCAGCTTGGCCGTTCTTGGAGCCGGT
GGACACGAGCGAAGTTCCCGATTACCTGGATGTCGTGACAGATCCAATTG
ATTTATCCCTGATTGAAAAAAGGTTGAAAGAGGGGGTGGTAGTGGAGAGG
AGCGAGGGCAGGCAAGGGGGTGGAGGGAGGGAGGTGGTGATGAAGGAAGA
TGGAGGGAGAGAAGTAGGAGCAGGGTACTATCGGAATAAAGAGATGCTGT
TGGCGGACTTGTTGAGAATGTGCCGAAATTGTAAGCGATACAACAACCCG
AATACTGATTACTACACGGCAGGGCAGGAGATGGAGGGCTTCGTGAGGGG
GTTGTTCAAAAAGGCATCTGCGAAGGATGGGGAAGGAGGCGTGGCAACGG
TAGGGAAAAAGGTTGGGGATGAATAGAGGGAAGGACAAGAGTGCATGTGT
TTTCGAGGATGGGATCGGAGTGGCCTCTTGGCGGGTGGAATGGGAGAAGG
GAAGAGGTAGATTGGTATGGTGACATGTATTTGATTGGGGGGGGAGGGGG
GGTAAGGTCAGAGACACGATGCACAACTTGAAGCGAAGAAAAAGAATCTA
ACGCGAAGAGATGAGGATTACATGAAAAAGCAGTACCATCAGCATGGGGG
GCAGTAAGGGGAAGAAAGGGAAGACGGAATTAGAAACACGGTACAGAAGA
GGCCCTCTGAAACCGTCATCATCGAAATAACAAGAAGAAAATTTAAAGGC
CCTCGCTGGGCATATGTATAAAA

protein sequence of jgi.p|Nanoce1779_2|582939

>mRNA_3661-protein ID=mRNA_3661-protein|Name=jgi.p|Nanoce1779_2|582939|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MSIGDRLLVETTLSHLSLPPSLSLSLLSTENQQVKGYGTLLMNHLKEQAK
REGLRYFLTYADNYAIGYFRKQGFSKTLGMPRSQWTGYIKDYDGAHLMEC
YVHPTINYLDIPNMIARQRAFIHARLKEKAKSHVVYPGLACFKALKEGKK
EGGRVKDVMTVPGVREAGWNLSQLSSVSQRDIDRERVALQSFLSNVLREV
FNHRAAWPFLEPVDTSEVPDYLDVVTDPIDLSLIEKRLKEGVVVERSEGR
QGGGGREVVMKEDGGREVGAGYYRNKEMLLADLLRMCRNCKRYNNPNTDY
YTAGQEMEGFVRGLFKKASAKDGEGGVATVGKKVGDE*

mRNA from alignment at scaffold_6:897013..898533+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3661 ID=mRNA_3661|Name=jgi.p|Nanoce1779_2|582939|organism=Nannochloropsis oceanica|type=mRNA|length=1521bp|location=Sequence derived from alignment at scaffold_6:897013..898533+ (Nannochloropsis oceanica)
GGGTCACAGACGATGTCCATTGGCGATCGTTTACTAGTGGAGACAACTCT
CTCACACCTATCCCTCCCTCCTTCCCTCTCTCTCTCCCTCCTGTCAACTG
AAAACCAGCAAGTCAAGGGGTATGGAACGCTGCTAATGAACCACCTTAAG
GAACAGGCCAAGCGCGAAGGCCTTAGGTACTTTCTGACTTACGCCGACAA
CTATGCCATCGGCTATTTCCGCAAACAAGGCTTCTCTAAGACGCTGGGCA
TGCCTCGCTCGCAGGTAATGGAGAAAAGGGATAGCGGAAGGGGGAAGGGA
GGGAGGGAAGGAAGGGCGGCCATGTGCCTGACAGAATGTCCTCCCAACTC
ATTGCTTACTTACTTCCTCCCTCCCTCCCTCCCCCCCTCCCTTCCTCCCT
CGACGCCACCAGTGGACGGGCTATATCAAAGACTACGACGGAGCGCACCT
CATGGAGTGCTACGTCCATCCCACCATCAACTACCTGGATATCCCTAATA
TGATCGCCCGTCAACGTGCCTTCATCCACGCCCGCCTCAAGGAAAAAGCG
AAGTCTCACGTGGTCTACCCCGGGCTCGCCTGCTTCAAAGCTCTGAAGGA
GGGAAAGAAGGAAGGAGGGCGGGTGAAGGATGTGATGACCGTCCCGGGCG
TAAGGGAAGCCGGGTGGAACTTGAGTCAGCTTTCGTCGGTGAGCCAGAGA
GATATAGATCGAGAGAGGGTGGCTTTGCAGTCGTTTTTGAGCAATGTGTT
AAGAGAAGTGTTTAACCATCGGGCAGCTTGGCCGTTCTTGGAGCCGGTGG
ACACGAGCGAAGTTCCCGATTACCTGGATGTCGTGACAGATCCAATTGAT
TTATCCCTGATTGAAAAAAGGTTGAAAGAGGGGGTGGTAGTGGAGAGGAG
CGAGGGCAGGCAAGGGGGTGGAGGGAGGGAGGTGGTGATGAAGGAAGATG
GAGGGAGAGAAGTAGGAGCAGGGTACTATCGGAATAAAGAGATGCTGTTG
GCGGACTTGTTGAGAATGTGCCGAAATTGTAAGCGATACAACAACCCGAA
TACTGATTACTACACGGCAGGGCAGGAGATGGAGGGCTTCGTGAGGGGGT
TGTTCAAAAAGGCATCTGCGAAGGATGGGGAAGGAGGCGTGGCAACGGTA
GGGAAAAAGGTTGGGGATGAATAGAGGGAAGGACAAGAGTGCATGTGTTT
TCGAGGATGGGATCGGAGTGGCCTCTTGGCGGGTGGAATGGGAGAAGGGA
AGAGGTAGATTGGTATGGTGACATGTATTTGATTGGGGGGGGAGGGGGGG
TAAGGTCAGAGACACGATGCACAACTTGAAGCGAAGAAAAAGAATCTAAC
GCGAAGAGATGAGGATTACATGAAAAAGCAGTACCATCAGCATGGGGGGC
AGTAAGGGGAAGAAAGGGAAGACGGAATTAGAAACACGGTACAGAAGAGG
CCCTCTGAAACCGTCATCATCGAAATAACAAGAAGAAAATTTAAAGGCCC
TCGCTGGGCATATGTATAAAA

Coding sequence (CDS) from alignment at scaffold_6:897013..898533+

>mRNA_3661 ID=mRNA_3661|Name=jgi.p|Nanoce1779_2|582939|organism=Nannochloropsis oceanica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_6:897013..898533+ (Nannochloropsis oceanica)
ATGTCCATTGGCGATCGTTTACTAGTGGAGACAACTCTCTCACACCTATC
CCTCCCTCCTTCCCTCTCTCTCTCCCTCCTGTCAACTGAAAACCAGCAAG
TCAAGGGGTATGGAACGCTGCTAATGAACCACCTTAAGGAACAGGCCAAG
CGCGAAGGCCTTAGGTACTTTCTGACTTACGCCGACAACTATGCCATCGG
CTATTTCCGCAAACAAGGCTTCTCTAAGACGCTGGGCATGCCTCGCTCGC
AGTGGACGGGCTATATCAAAGACTACGACGGAGCGCACCTCATGGAGTGC
TACGTCCATCCCACCATCAACTACCTGGATATCCCTAATATGATCGCCCG
TCAACGTGCCTTCATCCACGCCCGCCTCAAGGAAAAAGCGAAGTCTCACG
TGGTCTACCCCGGGCTCGCCTGCTTCAAAGCTCTGAAGGAGGGAAAGAAG
GAAGGAGGGCGGGTGAAGGATGTGATGACCGTCCCGGGCGTAAGGGAAGC
CGGGTGGAACTTGAGTCAGCTTTCGTCGGTGAGCCAGAGAGATATAGATC
GAGAGAGGGTGGCTTTGCAGTCGTTTTTGAGCAATGTGTTAAGAGAAGTG
TTTAACCATCGGGCAGCTTGGCCGTTCTTGGAGCCGGTGGACACGAGCGA
AGTTCCCGATTACCTGGATGTCGTGACAGATCCAATTGATTTATCCCTGA
TTGAAAAAAGGTTGAAAGAGGGGGTGGTAGTGGAGAGGAGCGAGGGCAGG
CAAGGGGGTGGAGGGAGGGAGGTGGTGATGAAGGAAGATGGAGGGAGAGA
AGTAGGAGCAGGGTACTATCGGAATAAAGAGATGCTGTTGGCGGACTTGT
TGAGAATGTGCCGAAATTGTAAGCGATACAACAACCCGAATACTGATTAC
TACACGGCAGGGCAGGAGATGGAGGGCTTCGTGAGGGGGTTGTTCAAAAA
GGCATCTGCGAAGGATGGGGAAGGAGGCGTGGCAACGGTAGGGAAAAAGG
TTGGGGATGAATAGATGTCCATTGGCGATCGTTTACTAGTGGAGACAACT
CTCTCACACCTATCCCTCCCTCCTTCCCTCTCTCTCTCCCTCCTGTCAAC
TGAAAACCAGCAAGTCAAGGGGTATGGAACGCTGCTAATGAACCACCTTA
AGGAACAGGCCAAGCGCGAAGGCCTTAGGTACTTTCTGACTTACGCCGAC
AACTATGCCATCGGCTATTTCCGCAAACAAGGCTTCTCTAAGACGCTGGG
CATGCCTCGCTCGCAGTGGACGGGCTATATCAAAGACTACGACGGAGCGC
ACCTCATGGAGTGCTACGTCCATCCCACCATCAACTACCTGGATATCCCT
AATATGATCGCCCGTCAACGTGCCTTCATCCACGCCCGCCTCAAGGAAAA
AGCGAAGTCTCACGTGGTCTACCCCGGGCTCGCCTGCTTCAAAGCTCTGA
AGGAGGGAAAGAAGGAAGGAGGGCGGGTGAAGGATGTGATGACCGTCCCG
GGCGTAAGGGAAGCCGGGTGGAACTTGAGTCAGCTTTCGTCGGTGAGCCA
GAGAGATATAGATCGAGAGAGGGTGGCTTTGCAGTCGTTTTTGAGCAATG
TGTTAAGAGAAGTGTTTAACCATCGGGCAGCTTGGCCGTTCTTGGAGCCG
GTGGACACGAGCGAAGTTCCCGATTACCTGGATGTCGTGACAGATCCAAT
TGATTTATCCCTGATTGAAAAAAGGTTGAAAGAGGGGGTGGTAGTGGAGA
GGAGCGAGGGCAGGCAAGGGGGTGGAGGGAGGGAGGTGGTGATGAAGGAA
GATGGAGGGAGAGAAGTAGGAGCAGGGTACTATCGGAATAAAGAGATGCT
GTTGGCGGACTTGTTGAGAATGTGCCGAAATTGTAAGCGATACAACAACC
CGAATACTGATTACTACACGGCAGGGCAGGAGATGGAGGGCTTCGTGAGG
GGGTTGTTCAAAAAGGCATCTGCGAAGGATGGGGAAGGAGGCGTGGCAAC
GGTAGGGAAAAAGGTTGGGGATGAATAG

Synonyms

Publications