jgi.p|Nanoce1779_2|582933, mRNA_3659 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582933
Unique NamemRNA_3659
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length770
Alignment locationscaffold_6:893565..895264 -

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Properties
Property NameValue
TranscriptId583019
TrackFilteredModels2
ProteinId582933
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:893565..895264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582933gene_3659Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582933mRNA_3659-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3659CDS_3659Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3659 ID=mRNA_3659|Name=jgi.p|Nanoce1779_2|582933|organism=Nannochloropsis oceanica|type=mRNA|length=770bp
ACAGCCATGGCAGCAGCAGCAAGAGCCGTGGGACATGCCTGGACGCGGCT
CGTGTCATCAACAATCATGGGCACGAGAAGTAGCGGCGGTCTCTCCTCCT
CCACTATGAGCAACACCCGTCCCATCTCCTCTGCCTCCTCCCCCATGTCG
GCCGCTACTTCCACTCCCACACCCACCGCAGCCATCGCGGCCACCAGACC
ACCCAAACACAAGACGCCCCGTAAGCGAGCCTCCTCCATCCTCGCTGAGC
TTAAGCTCGCAGAGCATGCCAAAGGTCTAGCAGCCAACGCCGATAAAGAT
ATCCCAACGTTTCGTCCAGGGGATTCGATTGAGGTGAAGATGGTGACACA
TTTGACTTCCACGGAGACGGACACCTACAGAGGGGTGGTGCTGAGCGTAC
GGAAGAATGGGGCCGACACGCGGTTTACTCTGGCAGACGTGTTCCTGGGC
ACGCCCATTTTGAGCAGCATCCCACTCTACAGCCCGTTTATCAAGAGTCT
TAAGGTGCTGCAAGCCGCCTACATCCACAAGGGAAAGAAGCGTGTGCGAC
GGTCCAAGTTATACTACCTCTGGGAAAAGCGAGATCCCAAGGTGTTCTCG
ATCTCCACTTAAGGACACAGAGGGGTGTGTGTGTCTGCGTGGGGGTGTGG
GCAAGGAAGCAAGGAGAGTGAAGTCTTCTTTCGGAAGTTTGGAATACTGT
AAGATATGAATTACAGACGAGGAGGAAAGAAGAAAAAGGAATAACCACAA
AATAGACGAGGACAGGAGTA
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protein sequence of jgi.p|Nanoce1779_2|582933

>mRNA_3659-protein ID=mRNA_3659-protein|Name=jgi.p|Nanoce1779_2|582933|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MAAAARAVGHAWTRLVSSTIMGTRSSGGLSSSTMSNTRPISSASSPMSAA
TSTPTPTAAIAATRPPKHKTPRKRASSILAELKLAEHAKGLAANADKDIP
TFRPGDSIEVKMVTHLTSTETDTYRGVVLSVRKNGADTRFTLADVFLGTP
ILSSIPLYSPFIKSLKVLQAAYIHKGKKRVRRSKLYYLWEKRDPKVFSIS
T*
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mRNA from alignment at scaffold_6:893565..895264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3659 ID=mRNA_3659|Name=jgi.p|Nanoce1779_2|582933|organism=Nannochloropsis oceanica|type=mRNA|length=1700bp|location=Sequence derived from alignment at scaffold_6:893565..895264- (Nannochloropsis oceanica)
ACAGCCATGGCAGCAGCAGCAAGAGCCGTGGGACATGCCTGGACGCGGCT
CGTGTCATCAACAATCATGGGCACGAGAAGTAGCGGCGGTCTCTCCTCCT
CCACTATGAGCAACACCCGTCCCATCTCCTCTGCCTCCTCCCCCATGTCG
GCCGCTACTTCCACTCCCACACCCACCGCAGCCATCGCGGCCACCAGACC
ACCCAAACACAAGACGCCCCGTAAGCGGTAAGTTCCCCTTGCTTGCGAAG
AGTCGGACCAGCCTTTGGAAGGGAGGATGATTTGCGCGGACGTTGTAGTA
TAGAGCCTCAAGAGCGTGCGACATGTCATCGCGAACATGATTGCAGCGAA
GGGGGAAATCCCAATACTTATCAATCTCAAAACCGAATTCCGGGCTCTTT
ATCAAGAACACCAGGAGGAAGTGAGGGAGGACGTGGCGGATCGGCCTCAA
GGCACTCTCTCTCTATTGTTATACATCAGTCGAGCGTATGGTATCGGGAG
CGCTTTCAGTATGCCTCTGCCCGTCTACGCTTGGCATGCTCCAAATCTAC
CCCTCTTTCTTCCTTATCGTCCTTGTCACAAATATCTCCTCCCTCCCACT
TGCTTCCTCCGCGTACCCCCAAACTTTACACAGAGCCTCCTCCATCCTCG
CTGAGCTTAAGCTCGCAGAGCATGCCAAAGGTCTAGCAGCCAACGCCGAT
AAAGATATCCCAACGTTTCGTCCAGGGGATTCGATTGAGGTGAAGATGGT
GACACATTTGACTTCCACGGAGACGGACACCTACAGAGGGGTGGTGCTGA
GCGTACGGAAGAATGGGGCCGACACGCGGTTTACTCTGGCAGACGTGCGT
ATTTAGGGAAGGGACGTGAAGGAAGTGGGGGGGAGAAAGTGTGCATACCG
TTGTTTGTGTAAGAAGTTGCCTGTCCTGATTGCGTCCCTAGGCGCGGCGG
CTAACAGGCTTTTGCCCTTACTCCCTTCAACTAAAGTCACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACATACGTTAAATAACCTACGA
ATTGACAGGTGTTCCTGGGCACGCCCATTTTGAGCAGCATCCCACTCTAC
AGCCCGTTTATCAAGAGTCTTAAGGTTAGGTCGGGTTTTCGTGCCGGGGT
GTGGGTGTGGTGGGTGTGTATCTGAGGGAGAAAACACAGATTGAAAGCAT
CTTCCGGTACTCACCGTCAAACTCCCACTGCTCCCACGCACCCCACTCCA
CCTCTTTCACCCAAATCAAAACCTATACACTCAGGTGCTGCAAGCCGCCT
ACATCCACAAGGGAAAGAAGCGTGTGCGACGGTCCAAGTTATACTACCTC
TGGGAAAAGCGAGATCCCAAGGTGTTCTCGATCTCCACTTAAGGACACAG
AGGGGTGTGTGTGTCTGCGTGGGGGTGTGGGCAAGGAAGCAAGGAGAGTG
AAGTCTTCTTTCGGAAGTTTGGAATACTGTAAGATATGAATTACAGACGA
GGAGGAAAGAAGAAAAAGGAATAACCACAAAATAGACGAGGACAGGAGTA
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Coding sequence (CDS) from alignment at scaffold_6:893565..895264-

>mRNA_3659 ID=mRNA_3659|Name=jgi.p|Nanoce1779_2|582933|organism=Nannochloropsis oceanica|type=CDS|length=2424bp|location=Sequence derived from alignment at scaffold_6:893565..895264- (Nannochloropsis oceanica)
GTGCTGCAAGCCGCCTACATCCACAAGGGAAAGAAGCGTGTGCGACGGTC
CAAGTTATACTACCTCTGGGAAAAGCGAGATCCCAAGGTGTTCTCGATCT
CCACTTAAGTGTTCCTGGGCACGCCCATTTTGAGCAGCATCCCACTCTAC
AGCCCGTTTATCAAGAGTCTTAAGAGCCTCCTCCATCCTCGCTGAGCTTA
AGCTCGCAGAGCATGCCAAAGGTCTAGCAGCCAACGCCGATAAAGATATC
CCAACGTTTCGTCCAGGGGATTCGATTGAGGTGAAGATGGTGACACATTT
GACTTCCACGGAGACGGACACCTACAGAGGGGTGGTGCTGAGCGTACGGA
AGAATGGGGCCGACACGCGGTTTACTCTGGCAGACATGGCAGCAGCAGCA
AGAGCCGTGGGACATGCCTGGACGCGGCTCGTGTCATCAACAATCATGGG
CACGAGAAGTAGCGGCGGTCTCTCCTCCTCCACTATGAGCAACACCCGTC
CCATCTCCTCTGCCTCCTCCCCCATGTCGGCCGCTACTTCCACTCCCACA
CCCACCGCAGCCATCGCGGCCACCAGACCACCCAAACACAAGACGCCCCG
TAAGCGGTGCTGCAAGCCGCCTACATCCACAAGGGAAAGAAGCGTGTGCG
ACGGTCCAAGTTATACTACCTCTGGGAAAAGCGAGATCCCAAGGTGTTCT
CGATCTCCACTTAAGTGTTCCTGGGCACGCCCATTTTGAGCAGCATCCCA
CTCTACAGCCCGTTTATCAAGAGTCTTAAGAGCCTCCTCCATCCTCGCTG
AGCTTAAGCTCGCAGAGCATGCCAAAGGTCTAGCAGCCAACGCCGATAAA
GATATCCCAACGTTTCGTCCAGGGGATTCGATTGAGGTGAAGATGGTGAC
ACATTTGACTTCCACGGAGACGGACACCTACAGAGGGGTGGTGCTGAGCG
TACGGAAGAATGGGGCCGACACGCGGTTTACTCTGGCAGACATGGCAGCA
GCAGCAAGAGCCGTGGGACATGCCTGGACGCGGCTCGTGTCATCAACAAT
CATGGGCACGAGAAGTAGCGGCGGTCTCTCCTCCTCCACTATGAGCAACA
CCCGTCCCATCTCCTCTGCCTCCTCCCCCATGTCGGCCGCTACTTCCACT
CCCACACCCACCGCAGCCATCGCGGCCACCAGACCACCCAAACACAAGAC
GCCCCGTAAGCGGTGCTGCAAGCCGCCTACATCCACAAGGGAAAGAAGCG
TGTGCGACGGTCCAAGTTATACTACCTCTGGGAAAAGCGAGATCCCAAGG
TGTTCTCGATCTCCACTTAAGTGTTCCTGGGCACGCCCATTTTGAGCAGC
ATCCCACTCTACAGCCCGTTTATCAAGAGTCTTAAGAGCCTCCTCCATCC
TCGCTGAGCTTAAGCTCGCAGAGCATGCCAAAGGTCTAGCAGCCAACGCC
GATAAAGATATCCCAACGTTTCGTCCAGGGGATTCGATTGAGGTGAAGAT
GGTGACACATTTGACTTCCACGGAGACGGACACCTACAGAGGGGTGGTGC
TGAGCGTACGGAAGAATGGGGCCGACACGCGGTTTACTCTGGCAGACATG
GCAGCAGCAGCAAGAGCCGTGGGACATGCCTGGACGCGGCTCGTGTCATC
AACAATCATGGGCACGAGAAGTAGCGGCGGTCTCTCCTCCTCCACTATGA
GCAACACCCGTCCCATCTCCTCTGCCTCCTCCCCCATGTCGGCCGCTACT
TCCACTCCCACACCCACCGCAGCCATCGCGGCCACCAGACCACCCAAACA
CAAGACGCCCCGTAAGCGGTGCTGCAAGCCGCCTACATCCACAAGGGAAA
GAAGCGTGTGCGACGGTCCAAGTTATACTACCTCTGGGAAAAGCGAGATC
CCAAGGTGTTCTCGATCTCCACTTAAGTGTTCCTGGGCACGCCCATTTTG
AGCAGCATCCCACTCTACAGCCCGTTTATCAAGAGTCTTAAGAGCCTCCT
CCATCCTCGCTGAGCTTAAGCTCGCAGAGCATGCCAAAGGTCTAGCAGCC
AACGCCGATAAAGATATCCCAACGTTTCGTCCAGGGGATTCGATTGAGGT
GAAGATGGTGACACATTTGACTTCCACGGAGACGGACACCTACAGAGGGG
TGGTGCTGAGCGTACGGAAGAATGGGGCCGACACGCGGTTTACTCTGGCA
GACATGGCAGCAGCAGCAAGAGCCGTGGGACATGCCTGGACGCGGCTCGT
GTCATCAACAATCATGGGCACGAGAAGTAGCGGCGGTCTCTCCTCCTCCA
CTATGAGCAACACCCGTCCCATCTCCTCTGCCTCCTCCCCCATGTCGGCC
GCTACTTCCACTCCCACACCCACCGCAGCCATCGCGGCCACCAGACCACC
CAAACACAAGACGCCCCGTAAGCG
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Synonyms
Publications