jgi.p|Nanoce1779_2|629039, mRNA_3652 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629039
Unique Name	mRNA_3652
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1803
Alignment location	scaffold_6:864976..867087 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629125
Track	FilteredModels2
ProteinId	629039

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:864976..867087 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629039	gene_3652	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629039	mRNA_3652-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3652	CDS_3652	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:864976..867087+
coding sequence from alignment at scaffold_6:864976..867087+

mRNA sequence

>mRNA_3652 ID=mRNA_3652|Name=jgi.p|Nanoce1779_2|629039|organism=Nannochloropsis oceanica|type=mRNA|length=1803bp
ACAGGGACTCGCCACCTCGGCTCGCGCGTTCCACAAGGGAGGACCCCTCC
GTCTTCATACTGTCAATACCCCTGGGGCAGAGAAATCCTAGACCTCGCAT
ATACCTACCACCCAGCCAGCGGGGACACAATTATGGTGCGGCCGCTTGTC
CCTCCCATCCCCTTAGCTGCCCCTACTTCTGCCCCCACTGGCGACCCTCC
AGACGATGCGCGATGCCGAAGCCCCATGTCTAATTCCAGGTCCTCCGCGC
CTGTTTTCCTTAGTCCCGCGGGTAAACCCTGCGTGATCTGTTTCGACATG
GAGCGGGATGGCGTAGTGTGCAGTGGTACCGAGAATCACTTCGTTTGCCG
CGGATGTCTGCAGGGCTTCATCCGCAACCTCGAGCCCATTACCATCCGTC
GTTCGGGCGGTTGTGTCAGCTGTCCTGCCATTGAAGAAAGCACAGGCCAC
GCTTGTGACGCGGACCCCTGGAGTTACGATGACCTCGTCAACCTTCTCGA
TCCAAGTACCCAGCGCATGTACGTCCAGCGACTCGAGGGATTATTAGCCA
GTGTTTTATCAGCCGAGACGGCCATCACGGGGAAGGCTCCCCGTTCCCCC
TATCGAGGCAGTATTGGGGGTGGGCGACGTTCCCGGTCCGTGAGTCCCCT
CCCCCTCTCCTCCTCCTCCGATCATGACAAAATACAAGGATATCGCCAAT
ACATTGCTGAAGAAATTTTGACACTGAAGTGCCCCAGAGAAGGGTGTCGT
CGAGCTTTCTTGGATTTTGATGGATGTTTTGCGTTGACCTGCCCTGGGTG
TGGGTGTGCTTTTTGTGCGGCCTGCATAGAGGATTGTGGGGACGATGCCC
ACGAACACTGCAACGTGGTCCACCAGGGGTTATTTGGGACTTTGGACAAA
TTTAATGAGATACAGGGGCACAGGCGATTGGTGGCCGTGACGAGATACTT
GACGGAGGTGGTGTGTGTGCACGAGTCGAGGGGATGGGTGGAGGAAAGGT
TGCTTGGGCCAGGGGGGGCGTTGGAGAAGGATTTGGGGGAGGTGGGTATA
AGGGTACAGGAGGTAAAGCGCTCACTTGCGGGGGAGTATTTTTTGCCTTT
CGGTGCGGGAGGTGATAAAGGCGGCGGTGGTGTTGGCAAGGCTCTCGCTG
TTCGGTTGGGGGCGGCTGATGATGGCGAGCAGGAGCAGCAGCAGGAGCAG
GAGCAGGAAGAGGGTTTAGCTGCTCGACAGCGGCGGCGGCTCGGGGAGCT
GTTCTTGAAAAGACAAGGGTATGTAGCGACAGAGAAAGATGCAGTCTCCC
GATTCTTGGGTACGGTAGTGACGGCCTCCCTGATCGTGGTGGGTGTGTGG
CGGTTGACTGATGTGGCCGACAGCACCAGCAGTACCCGCGACCGCAGCAG
CAGTGATAATGAGGAATGGGGAGTGGAGAGCACGCGATTGATTGGGGGAG
CGATGCTGGGACCAGCAATGGTGTTACTGCTGACGGGGAGGGGAAATCAG
CTTATACAATCGTTGAGAATTGCCTTGCTCACGGCTTTGATAGTTATCCC
TCTTTTCTACTTCTCCGAGCCTTTGATTACGTTTGTAGTGATGATTTTGG
TGAATGTCCTATCGGTGACAGCGCATATTCTGGGGATGCTTCTAGATCTT
TGTGTGGAGGGAGCGCGGCTCTCCAAAATTATGCTGTCGAATTTATCTAT
TGAGGTTGCAGCACTGTACGGGCTGCCAGGAGTGAAGGAGACGTTGAGTA
CTGTGGGTCTGCTGCCACCGGTTGAACTGGGGTTGGAGACAGCCACGTCT
TGA

protein sequence of jgi.p|Nanoce1779_2|629039

>mRNA_3652-protein ID=mRNA_3652-protein|Name=jgi.p|Nanoce1779_2|629039|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MVRPLVPPIPLAAPTSAPTGDPPDDARCRSPMSNSRSSAPVFLSPAGKPC
VICFDMERDGVVCSGTENHFVCRGCLQGFIRNLEPITIRRSGGCVSCPAI
EESTGHACDADPWSYDDLVNLLDPSTQRMYVQRLEGLLASVLSAETAITG
KAPRSPYRGSIGGGRRSRSVSPLPLSSSSDHDKIQGYRQYIAEEILTLKC
PREGCRRAFLDFDGCFALTCPGCGCAFCAACIEDCGDDAHEHCNVVHQGL
FGTLDKFNEIQGHRRLVAVTRYLTEVVCVHESRGWVEERLLGPGGALEKD
LGEVGIRVQEVKRSLAGEYFLPFGAGGDKGGGGVGKALAVRLGAADDGEQ
EQQQEQEQEEGLAARQRRRLGELFLKRQGYVATEKDAVSRFLGTVVTASL
IVVGVWRLTDVADSTSSTRDRSSSDNEEWGVESTRLIGGAMLGPAMVLLL
TGRGNQLIQSLRIALLTALIVIPLFYFSEPLITFVVMILVNVLSVTAHIL
GMLLDLCVEGARLSKIMLSNLSIEVAALYGLPGVKETLSTVGLLPPVELG
LETATS*

mRNA from alignment at scaffold_6:864976..867087+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3652 ID=mRNA_3652|Name=jgi.p|Nanoce1779_2|629039|organism=Nannochloropsis oceanica|type=mRNA|length=2112bp|location=Sequence derived from alignment at scaffold_6:864976..867087+ (Nannochloropsis oceanica)
ACAGGGACTCGCCACCTCGGCTCGCGCGTTCCACAAGGGAGGACCCCTCC
GTCTTCATACTGTCAATACCCCTGGGGCAGAGAAATCCTAGACCTCGCAT
ATACCTACCACCCAGCCAGCGGGGACACAATTATGGTGCGGCCGCTTGTC
CCTCCCATCCCCTTAGCTGCCCCTACTTCTGCCCCCACTGGCGACCCTCC
AGACGATGCGCGATGCCGAAGCCCCATGTCTAATTCCAGGTCCTCCGCGC
CTGTTTTCCTTAGTCCCGCGGGTAAACCCTGCGTGATCTGTTTCGACATG
GAGCGGGATGGCGTAGTGTGCAGTGGTACCGAGAATCACTTCGTTTGCCG
CGGATGTCTGCAGGTACGTTGTCTGGGGTCGGATGGTCTGAGGGGGGTGG
ATGGAACAACTGGAATCGAATGGACGCATTTATACATATAATTTGCATCG
TCAAGTCTATAGCTTGTATATTTGATTATGATGATGCCCTAACAGTGTGC
ACTCCGGTTTTCTTCCTTTTGGGAGGCAAGAAAATATACCCGACTCTATT
ACCCACCTGCACACCCTATTCCGCCACACGAATGAACGTCTCCAAGTACA
ACCGCTCCACCATCAAAATCCGCCTTCTGACCCTGTCCATCCCTGCATCT
ATCCCACCGTACATATATGTAGGGCTTCATCCGCAACCTCGAGCCCATTA
CCATCCGTCGTTCGGGCGGTTGTGTCAGCTGTCCTGCCATTGAAGAAAGC
ACAGGCCACGCTTGTGACGCGGACCCCTGGAGTTACGATGACCTCGTCAA
CCTTCTCGATCCAAGTACCCAGCGCATGTACGTCCAGCGACTCGAGGGAT
TATTAGCCAGTGTTTTATCAGCCGAGACGGCCATCACGGGGAAGGCTCCC
CGTTCCCCCTATCGAGGCAGTATTGGGGGTGGGCGACGTTCCCGGTCCGT
GAGTCCCCTCCCCCTCTCCTCCTCCTCCGATCATGACAAAATACAAGGAT
ATCGCCAATACATTGCTGAAGAAATTTTGACACTGAAGTGCCCCAGAGAA
GGGTGTCGTCGAGCTTTCTTGGATTTTGATGGATGTTTTGCGTTGACCTG
CCCTGGGTGTGGGTGTGCTTTTTGTGCGGCCTGCATAGAGGATTGTGGGG
ACGATGCCCACGAACACTGCAACGTGGTCCACCAGGGGTTATTTGGGACT
TTGGACAAATTTAATGAGATACAGGGGCACAGGCGATTGGTGGCCGTGAC
GAGATACTTGACGGAGGTGGTGTGTGTGCACGAGTCGAGGGGATGGGTGG
AGGAAAGGTTGCTTGGGCCAGGGGGGGCGTTGGAGAAGGATTTGGGGGAG
GTGGGTATAAGGGTACAGGAGGTAAAGCGCTCACTTGCGGGGGAGTATTT
TTTGCCTTTCGGTGCGGGAGGTGATAAAGGCGGCGGTGGTGTTGGCAAGG
CTCTCGCTGTTCGGTTGGGGGCGGCTGATGATGGCGAGCAGGAGCAGCAG
CAGGAGCAGGAGCAGGAAGAGGGTTTAGCTGCTCGACAGCGGCGGCGGCT
CGGGGAGCTGTTCTTGAAAAGACAAGGGTATGTAGCGACAGAGAAAGATG
CAGTCTCCCGATTCTTGGGTACGGTAGTGACGGCCTCCCTGATCGTGGTG
GGTGTGTGGCGGTTGACTGATGTGGCCGACAGCACCAGCAGTACCCGCGA
CCGCAGCAGCAGTGATAATGAGGAATGGGGAGTGGAGAGCACGCGATTGA
TTGGGGGAGCGATGCTGGGACCAGCAATGGTGTTACTGCTGACGGGGAGG
GGAAATCAGCTTATACAATCGTTGAGAATTGCCTTGCTCACGGCTTTGAT
AGTTATCCCTCTTTTCTACTTCTCCGAGCCTTTGATTACGTTTGTAGTGA
TGATTTTGGTGAATGTCCTATCGGTGACAGCGCATATTCTGGGGATGCTT
CTAGATCTTTGTGTGGAGGGAGCGCGGCTCTCCAAAATTATGCTGTCGAA
TTTATCTATTGAGGTTGCAGCACTGTACGGGCTGCCAGGAGTGAAGGAGA
CGTTGAGTACTGTGGGTCTGCTGCCACCGGTTGAACTGGGGTTGGAGACA
GCCACGTCTTGA

Coding sequence (CDS) from alignment at scaffold_6:864976..867087+

>mRNA_3652 ID=mRNA_3652|Name=jgi.p|Nanoce1779_2|629039|organism=Nannochloropsis oceanica|type=CDS|length=3342bp|location=Sequence derived from alignment at scaffold_6:864976..867087+ (Nannochloropsis oceanica)
ATGGTGCGGCCGCTTGTCCCTCCCATCCCCTTAGCTGCCCCTACTTCTGC
CCCCACTGGCGACCCTCCAGACGATGCGCGATGCCGAAGCCCCATGTCTA
ATTCCAGGTCCTCCGCGCCTGTTTTCCTTAGTCCCGCGGGTAAACCCTGC
GTGATCTGTTTCGACATGGAGCGGGATGGCGTAGTGTGCAGTGGTACCGA
GAATCACTTCGTTTGCCGCGGATGTCTGCAGGGCTTCATCCGCAACCTCG
AGCCCATTACCATCCGTCGTTCGGGCGGTTGTGTCAGCTGTCCTGCCATT
GAAGAAAGCACAGGCCACGCTTGTGACGCGGACCCCTGGAGTTACGATGA
CCTCGTCAACCTTCTCGATCCAAGTACCCAGCGCATGTACGTCCAGCGAC
TCGAGGGATTATTAGCCAGTGTTTTATCAGCCGAGACGGCCATCACGGGG
AAGGCTCCCCGTTCCCCCTATCGAGGCAGTATTGGGGGTGGGCGACGTTC
CCGGTCCGTGAGTCCCCTCCCCCTCTCCTCCTCCTCCGATCATGACAAAA
TACAAGGATATCGCCAATACATTGCTGAAGAAATTTTGACACTGAAGTGC
CCCAGAGAAGGGTGTCGTCGAGCTTTCTTGGATTTTGATGGATGTTTTGC
GTTGACCTGCCCTGGGTGTGGGTGTGCTTTTTGTGCGGCCTGCATAGAGG
ATTGTGGGGACGATGCCCACGAACACTGCAACGTGGTCCACCAGGGGTTA
TTTGGGACTTTGGACAAATTTAATGAGATACAGGGGCACAGGCGATTGGT
GGCCGTGACGAGATACTTGACGGAGGTGGTGTGTGTGCACGAGTCGAGGG
GATGGGTGGAGGAAAGGTTGCTTGGGCCAGGGGGGGCGTTGGAGAAGGAT
TTGGGGGAGGTGGGTATAAGGGTACAGGAGGTAAAGCGCTCACTTGCGGG
GGAGTATTTTTTGCCTTTCGGTGCGGGAGGTGATAAAGGCGGCGGTGGTG
TTGGCAAGGCTCTCGCTGTTCGGTTGGGGGCGGCTGATGATGGCGAGCAG
GAGCAGCAGCAGGAGCAGGAGCAGGAAGAGGGTTTAGCTGCTCGACAGCG
GCGGCGGCTCGGGGAGCTGTTCTTGAAAAGACAAGGGTATGTAGCGACAG
AGAAAGATGCAGTCTCCCGATTCTTGGGTACGGTAGTGACGGCCTCCCTG
ATCGTGGTGGGTGTGTGGCGGTTGACTGATGTGGCCGACAGCACCAGCAG
TACCCGCGACCGCAGCAGCAGTGATAATGAGGAATGGGGAGTGGAGAGCA
CGCGATTGATTGGGGGAGCGATGCTGGGACCAGCAATGGTGTTACTGCTG
ACGGGGAGGGGAAATCAGCTTATACAATCGTTGAGAATTGCCTTGCTCAC
GGCTTTGATAGTTATCCCTCTTTTCTACTTCTCCGAGCCTTTGATTACGT
TTGTAGTGATGATTTTGGTGAATGTCCTATCGGTGACAGCGCATATTCTG
GGGATGCTTCTAGATCTTTGTGTGGAGGGAGCGCGGCTCTCCAAAATTAT
GCTGTCGAATTTATCTATTGAGGTTGCAGCACTGTACGGGCTGCCAGGAG
TGAAGGAGACGTTGAGTACTGTGGGTCTGCTGCCACCGGTTGAACTGGGG
TTGGAGACAGCCACGTCTTGAATGGTGCGGCCGCTTGTCCCTCCCATCCC
CTTAGCTGCCCCTACTTCTGCCCCCACTGGCGACCCTCCAGACGATGCGC
GATGCCGAAGCCCCATGTCTAATTCCAGGTCCTCCGCGCCTGTTTTCCTT
AGTCCCGCGGGTAAACCCTGCGTGATCTGTTTCGACATGGAGCGGGATGG
CGTAGTGTGCAGTGGTACCGAGAATCACTTCGTTTGCCGCGGATGTCTGC
AGGGCTTCATCCGCAACCTCGAGCCCATTACCATCCGTCGTTCGGGCGGT
TGTGTCAGCTGTCCTGCCATTGAAGAAAGCACAGGCCACGCTTGTGACGC
GGACCCCTGGAGTTACGATGACCTCGTCAACCTTCTCGATCCAAGTACCC
AGCGCATGTACGTCCAGCGACTCGAGGGATTATTAGCCAGTGTTTTATCA
GCCGAGACGGCCATCACGGGGAAGGCTCCCCGTTCCCCCTATCGAGGCAG
TATTGGGGGTGGGCGACGTTCCCGGTCCGTGAGTCCCCTCCCCCTCTCCT
CCTCCTCCGATCATGACAAAATACAAGGATATCGCCAATACATTGCTGAA
GAAATTTTGACACTGAAGTGCCCCAGAGAAGGGTGTCGTCGAGCTTTCTT
GGATTTTGATGGATGTTTTGCGTTGACCTGCCCTGGGTGTGGGTGTGCTT
TTTGTGCGGCCTGCATAGAGGATTGTGGGGACGATGCCCACGAACACTGC
AACGTGGTCCACCAGGGGTTATTTGGGACTTTGGACAAATTTAATGAGAT
ACAGGGGCACAGGCGATTGGTGGCCGTGACGAGATACTTGACGGAGGTGG
TGTGTGTGCACGAGTCGAGGGGATGGGTGGAGGAAAGGTTGCTTGGGCCA
GGGGGGGCGTTGGAGAAGGATTTGGGGGAGGTGGGTATAAGGGTACAGGA
GGTAAAGCGCTCACTTGCGGGGGAGTATTTTTTGCCTTTCGGTGCGGGAG
GTGATAAAGGCGGCGGTGGTGTTGGCAAGGCTCTCGCTGTTCGGTTGGGG
GCGGCTGATGATGGCGAGCAGGAGCAGCAGCAGGAGCAGGAGCAGGAAGA
GGGTTTAGCTGCTCGACAGCGGCGGCGGCTCGGGGAGCTGTTCTTGAAAA
GACAAGGGTATGTAGCGACAGAGAAAGATGCAGTCTCCCGATTCTTGGGT
ACGGTAGTGACGGCCTCCCTGATCGTGGTGGGTGTGTGGCGGTTGACTGA
TGTGGCCGACAGCACCAGCAGTACCCGCGACCGCAGCAGCAGTGATAATG
AGGAATGGGGAGTGGAGAGCACGCGATTGATTGGGGGAGCGATGCTGGGA
CCAGCAATGGTGTTACTGCTGACGGGGAGGGGAAATCAGCTTATACAATC
GTTGAGAATTGCCTTGCTCACGGCTTTGATAGTTATCCCTCTTTTCTACT
TCTCCGAGCCTTTGATTACGTTTGTAGTGATGATTTTGGTGAATGTCCTA
TCGGTGACAGCGCATATTCTGGGGATGCTTCTAGATCTTTGTGTGGAGGG
AGCGCGGCTCTCCAAAATTATGCTGTCGAATTTATCTATTGAGGTTGCAG
CACTGTACGGGCTGCCAGGAGTGAAGGAGACGTTGAGTACTGTGGGTCTG
CTGCCACCGGTTGAACTGGGGTTGGAGACAGCCACGTCTTGA

Synonyms

Publications