jgi.p|Nanoce1779_2|238024, mRNA_365 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|238024
Unique NamemRNA_365
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1127
Alignment locationscaffold_3:907097..908223 -

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Properties
Property NameValue
TranscriptId238110
TrackFilteredModels2
ProteinId238024
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:907097..908223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|238024gene_365Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|238024mRNA_365-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_365CDS_365Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_365 ID=mRNA_365|Name=jgi.p|Nanoce1779_2|238024|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp
GAAAGACAATTCCAACAGAAAGGATGATAGCATTCCACTTCTGTCCTTGT
TTAAACTTGCTTTACTTTCTTCTTTCCCATTTCGCTGCTACTCCTTTCTG
AGGGCCTCAGCAATGTGGACACCCAACTAAATTAGCCATGACCACTGCCC
CACCCACAATCGCATTATTAACCGATCCAGCACACATAACCACGACAAAG
CTCTCTGTTGCTATTTTCAACATAGATCACAGCATTTTCATTTTCTTCTC
TGTATTTCCACCCAACTTTGTCAAGAATGGCCTTCTACTCCCCTCTCCTT
CGCTCCTTTCATCTCAACCATTCCAACCCAAAATTGTGTTATTCTGTGCC
TCCGTCCCTCCTCTGTACTCCATCACTTACTCCCACCGAACATTCCTCCA
AACCATCCACTTCCTCCTCCCCCTCCACTCGGCTCTGGTACTGACGAGTA
CCCTCCCCCCATCCCTCCTGCCCCTCCCCCTCCTCCTCCTCCTCCTCCAT
CCCCTCCCCAACTTCCACTCACGCCCGTGTCAAATCCGCCGCCTGTCGAG
GGCGCATCAGGATCATCAGCATAAGACGGAGTCGACGAACCACTCCCATC
ATACCCCCCGCCCCCACCGCCACCACCAAAGCCCGAAAGCATACCCGGAC
CGGTGGGTGGAAGAGTCGGGTCGGGCATGGCCGGCCCGCCCATTTCGGGA
GTCGAGGCCGGAGGAGCGAAAAACTGTTTGTGGAGGGGAAGGTCGAGGAA
AAAGGATTGATGTCAAGTGAGGGGAGGGAAGGAGGGAAGGAGGGAAGGGG
GGATAAAAAAATGAATCAGTCACACGGTCTCCTCGATGGTCTGGTTTTGC
TTTCTTCCACCCATGCCTACAACTCTGCCTCTCATCTTTTTATCCTTCTC
TTTCTCCCTCTTCTTCTCCTCCATATTGTCAAACGTTCTATATCCCTTCT
TCTCCCTTCCTCTCTCACCTACCTTCGTGATCGCAATCGAAGCACCCTCG
ATCATGGCAAGGACCAAACCACCAATCACTGCATTCTTGCCCGCGGCCTT
GGGCCCTGCTCTTATCGCCAGAAGACCGCCGGTGCAAGCGCCTGATAGGA
TTGCATTCCAAGGATCCTCCTGTGGTT
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protein sequence of jgi.p|Nanoce1779_2|238024

>mRNA_365-protein ID=mRNA_365-protein|Name=jgi.p|Nanoce1779_2|238024|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MTTAPPTIALLTDPAHITTTKLSVAIFNIDHSIFIFFSVFPPNFVKNGLL
LPSPSLLSSQPFQPKIVLFCASVPPLYSITYSHRTFLQTIHFLLPLHSAL
VLTSTLPPSLLPLPLLLLLLHPLPNFHSRPCQIRRLSRAHQDHQHKTEST
NHSHHTPRPHRHHQSPKAYPDRWVEESGRAWPARPFRESRPEERKTVCGG
EGRGKRIDVK*
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mRNA from alignment at scaffold_3:907097..908223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_365 ID=mRNA_365|Name=jgi.p|Nanoce1779_2|238024|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp|location=Sequence derived from alignment at scaffold_3:907097..908223- (Nannochloropsis oceanica)
GAAAGACAATTCCAACAGAAAGGATGATAGCATTCCACTTCTGTCCTTGT
TTAAACTTGCTTTACTTTCTTCTTTCCCATTTCGCTGCTACTCCTTTCTG
AGGGCCTCAGCAATGTGGACACCCAACTAAATTAGCCATGACCACTGCCC
CACCCACAATCGCATTATTAACCGATCCAGCACACATAACCACGACAAAG
CTCTCTGTTGCTATTTTCAACATAGATCACAGCATTTTCATTTTCTTCTC
TGTATTTCCACCCAACTTTGTCAAGAATGGCCTTCTACTCCCCTCTCCTT
CGCTCCTTTCATCTCAACCATTCCAACCCAAAATTGTGTTATTCTGTGCC
TCCGTCCCTCCTCTGTACTCCATCACTTACTCCCACCGAACATTCCTCCA
AACCATCCACTTCCTCCTCCCCCTCCACTCGGCTCTGGTACTGACGAGTA
CCCTCCCCCCATCCCTCCTGCCCCTCCCCCTCCTCCTCCTCCTCCTCCAT
CCCCTCCCCAACTTCCACTCACGCCCGTGTCAAATCCGCCGCCTGTCGAG
GGCGCATCAGGATCATCAGCATAAGACGGAGTCGACGAACCACTCCCATC
ATACCCCCCGCCCCCACCGCCACCACCAAAGCCCGAAAGCATACCCGGAC
CGGTGGGTGGAAGAGTCGGGTCGGGCATGGCCGGCCCGCCCATTTCGGGA
GTCGAGGCCGGAGGAGCGAAAAACTGTTTGTGGAGGGGAAGGTCGAGGAA
AAAGGATTGATGTCAAGTGAGGGGAGGGAAGGAGGGAAGGAGGGAAGGGG
GGATAAAAAAATGAATCAGTCACACGGTCTCCTCGATGGTCTGGTTTTGC
TTTCTTCCACCCATGCCTACAACTCTGCCTCTCATCTTTTTATCCTTCTC
TTTCTCCCTCTTCTTCTCCTCCATATTGTCAAACGTTCTATATCCCTTCT
TCTCCCTTCCTCTCTCACCTACCTTCGTGATCGCAATCGAAGCACCCTCG
ATCATGGCAAGGACCAAACCACCAATCACTGCATTCTTGCCCGCGGCCTT
GGGCCCTGCTCTTATCGCCAGAAGACCGCCGGTGCAAGCGCCTGATAGGA
TTGCATTCCAAGGATCCTCCTGTGGTT
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Coding sequence (CDS) from alignment at scaffold_3:907097..908223-

>mRNA_365 ID=mRNA_365|Name=jgi.p|Nanoce1779_2|238024|organism=Nannochloropsis oceanica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_3:907097..908223- (Nannochloropsis oceanica)
ATGACCACTGCCCCACCCACAATCGCATTATTAACCGATCCAGCACACAT
AACCACGACAAAGCTCTCTGTTGCTATTTTCAACATAGATCACAGCATTT
TCATTTTCTTCTCTGTATTTCCACCCAACTTTGTCAAGAATGGCCTTCTA
CTCCCCTCTCCTTCGCTCCTTTCATCTCAACCATTCCAACCCAAAATTGT
GTTATTCTGTGCCTCCGTCCCTCCTCTGTACTCCATCACTTACTCCCACC
GAACATTCCTCCAAACCATCCACTTCCTCCTCCCCCTCCACTCGGCTCTG
GTACTGACGAGTACCCTCCCCCCATCCCTCCTGCCCCTCCCCCTCCTCCT
CCTCCTCCTCCATCCCCTCCCCAACTTCCACTCACGCCCGTGTCAAATCC
GCCGCCTGTCGAGGGCGCATCAGGATCATCAGCATAAGACGGAGTCGACG
AACCACTCCCATCATACCCCCCGCCCCCACCGCCACCACCAAAGCCCGAA
AGCATACCCGGACCGGTGGGTGGAAGAGTCGGGTCGGGCATGGCCGGCCC
GCCCATTTCGGGAGTCGAGGCCGGAGGAGCGAAAAACTGTTTGTGGAGGG
GAAGGTCGAGGAAAAAGGATTGATGTCAAGTGA
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Synonyms
Publications