jgi.p|Nanoce1779_2|582876, mRNA_3644 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582876
Unique NamemRNA_3644
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1059
Alignment locationscaffold_6:845503..846561 +

Link to JBrowse

Properties
Property NameValue
TranscriptId582962
TrackFilteredModels2
ProteinId582876
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:845503..846561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582876gene_3644Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582876mRNA_3644-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3644CDS_3644Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3644 ID=mRNA_3644|Name=jgi.p|Nanoce1779_2|582876|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
CAACAGGCACGTGCTAGGTCTCTGGGCGTCACACGCAGCCCTAACCCAAG
CTCCTAGCAAGCCCTCCATTCCCCGGTCCCCGGCCTATCATCATCGAGCG
CCGTCATTCCCTACGCATACTTCCATCTACATACACCAAACCCCAGGATT
AATAATGGCCGGGCCTCGACCAACCAAAGTTCTTTCTCTTCGGGAACTGC
AGATGGCCAAGCGCATGCTCAAAAGTAACAAGGTGCCGGCGTGCCAACGG
GAGCTCACCGCCCTGCTGAACGCTATGGACCGCAAGGACAAGGGAGATGG
GAACGTCAACATTAGAATATTGCAAACCGCTCTGGAGCACTGCTTGCATG
CATCGGTAAATGTCTTGAATGGGATTGTTGGAGGTTGGTCGTGGATGGGG
CTGGATCTTGGGTGGGATATAGTAAAGGCATGTAAATTGGCGTTGGATCT
CGGTAGTTGTGTGCCTGCGCGCCTGGTACCACGATCGAGAATAAGAGGCG
AGAAGGGCGGGGTCAGGACTATTTCAAGATTTGATAGGCTATCGAATTTT
ATAATTTGCATGGCCAGAAGGGGGTTTATGAGAAGATTGAAAACCCCTCC
TATTCTCGAAGATGCTGCTTTCTTTATCCAAGCGTACACATATCGCTTGG
CAGCACTCAGGATGCAGAAATATGAAAAGAATAACCCGCACACTCATTAT
CTGAATTCCAACTCTTCCCCCTTTGACTCATTGAAATCAAAACAGGACCA
GGCTAAGAAGGTGGCTGCGCCGCCGGTGGGCTTAGGCGTGCTTGCCCGGG
CCACCAAGAAGAAGTAGATATTGAGGAACAGGATTGGGCAGCAACCGCGA
AGAAGAAATGGGGTTTGCAGGGGATGTGGAGAAGAGAGAAATGCAGGCCT
GCGTAGAAAATGTGGGTTTTCGAACCTCGACAACATGTACTCACATACCC
GCTCCTGTTAGCCGGAGATGAAAGAGCCCTTGAAGAGCCGACCTTCCCCC
AAATGATACGCCTTACCAAAATGTAAAAAAAGAAACAACAATAGAAAAAG
GTGTGAAAA
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protein sequence of jgi.p|Nanoce1779_2|582876

>mRNA_3644-protein ID=mRNA_3644-protein|Name=jgi.p|Nanoce1779_2|582876|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MAGPRPTKVLSLRELQMAKRMLKSNKVPACQRELTALLNAMDRKDKGDGN
VNIRILQTALEHCLHASVNVLNGIVGGWSWMGLDLGWDIVKACKLALDLG
SCVPARLVPRSRIRGEKGGVRTISRFDRLSNFIICMARRGFMRRLKTPPI
LEDAAFFIQAYTYRLAALRMQKYEKNNPHTHYLNSNSSPFDSLKSKQDQA
KKVAAPPVGLGVLARATKKK*
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mRNA from alignment at scaffold_6:845503..846561+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3644 ID=mRNA_3644|Name=jgi.p|Nanoce1779_2|582876|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp|location=Sequence derived from alignment at scaffold_6:845503..846561+ (Nannochloropsis oceanica)
CAACAGGCACGTGCTAGGTCTCTGGGCGTCACACGCAGCCCTAACCCAAG
CTCCTAGCAAGCCCTCCATTCCCCGGTCCCCGGCCTATCATCATCGAGCG
CCGTCATTCCCTACGCATACTTCCATCTACATACACCAAACCCCAGGATT
AATAATGGCCGGGCCTCGACCAACCAAAGTTCTTTCTCTTCGGGAACTGC
AGATGGCCAAGCGCATGCTCAAAAGTAACAAGGTGCCGGCGTGCCAACGG
GAGCTCACCGCCCTGCTGAACGCTATGGACCGCAAGGACAAGGGAGATGG
GAACGTCAACATTAGAATATTGCAAACCGCTCTGGAGCACTGCTTGCATG
CATCGGTAAATGTCTTGAATGGGATTGTTGGAGGTTGGTCGTGGATGGGG
CTGGATCTTGGGTGGGATATAGTAAAGGCATGTAAATTGGCGTTGGATCT
CGGTAGTTGTGTGCCTGCGCGCCTGGTACCACGATCGAGAATAAGAGGCG
AGAAGGGCGGGGTCAGGACTATTTCAAGATTTGATAGGCTATCGAATTTT
ATAATTTGCATGGCCAGAAGGGGGTTTATGAGAAGATTGAAAACCCCTCC
TATTCTCGAAGATGCTGCTTTCTTTATCCAAGCGTACACATATCGCTTGG
CAGCACTCAGGATGCAGAAATATGAAAAGAATAACCCGCACACTCATTAT
CTGAATTCCAACTCTTCCCCCTTTGACTCATTGAAATCAAAACAGGACCA
GGCTAAGAAGGTGGCTGCGCCGCCGGTGGGCTTAGGCGTGCTTGCCCGGG
CCACCAAGAAGAAGTAGATATTGAGGAACAGGATTGGGCAGCAACCGCGA
AGAAGAAATGGGGTTTGCAGGGGATGTGGAGAAGAGAGAAATGCAGGCCT
GCGTAGAAAATGTGGGTTTTCGAACCTCGACAACATGTACTCACATACCC
GCTCCTGTTAGCCGGAGATGAAAGAGCCCTTGAAGAGCCGACCTTCCCCC
AAATGATACGCCTTACCAAAATGTAAAAAAAGAAACAACAATAGAAAAAG
GTGTGAAAA
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Coding sequence (CDS) from alignment at scaffold_6:845503..846561+

>mRNA_3644 ID=mRNA_3644|Name=jgi.p|Nanoce1779_2|582876|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_6:845503..846561+ (Nannochloropsis oceanica)
ATGGCCGGGCCTCGACCAACCAAAGTTCTTTCTCTTCGGGAACTGCAGAT
GGCCAAGCGCATGCTCAAAAGTAACAAGGTGCCGGCGTGCCAACGGGAGC
TCACCGCCCTGCTGAACGCTATGGACCGCAAGGACAAGGGAGATGGGAAC
GTCAACATTAGAATATTGCAAACCGCTCTGGAGCACTGCTTGCATGCATC
GGTAAATGTCTTGAATGGGATTGTTGGAGGTTGGTCGTGGATGGGGCTGG
ATCTTGGGTGGGATATAGTAAAGGCATGTAAATTGGCGTTGGATCTCGGT
AGTTGTGTGCCTGCGCGCCTGGTACCACGATCGAGAATAAGAGGCGAGAA
GGGCGGGGTCAGGACTATTTCAAGATTTGATAGGCTATCGAATTTTATAA
TTTGCATGGCCAGAAGGGGGTTTATGAGAAGATTGAAAACCCCTCCTATT
CTCGAAGATGCTGCTTTCTTTATCCAAGCGTACACATATCGCTTGGCAGC
ACTCAGGATGCAGAAATATGAAAAGAATAACCCGCACACTCATTATCTGA
ATTCCAACTCTTCCCCCTTTGACTCATTGAAATCAAAACAGGACCAGGCT
AAGAAGGTGGCTGCGCCGCCGGTGGGCTTAGGCGTGCTTGCCCGGGCCAC
CAAGAAGAAGTAG
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Synonyms
Publications