jgi.p|Nanoce1779_2|525657, mRNA_3642 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|525657
Unique Name	mRNA_3642
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1386
Alignment location	scaffold_6:842525..844216 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	525743
Track	FilteredModels2
ProteinId	525657

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:842525..844216 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|525657	gene_3642	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|525657	mRNA_3642-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3642	CDS_3642	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:842525..844216+
coding sequence from alignment at scaffold_6:842525..844216+

mRNA sequence

>mRNA_3642 ID=mRNA_3642|Name=jgi.p|Nanoce1779_2|525657|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
ATGGAGGAAGAGAATGACAGTGCGAGTAATTGTAGCACCAGCAGCAGTCC
CCGGTATACGGTCCAAGTGTCCGGTCAGGATTTTGTGTTAGACAAGCGGT
ACGACAATATTCGTCCTCTGGGCCACGGGGCGTATGGTGTGGTGATCTCC
GCGCAGGACAAGTCGATGGGTGGCGAAAAAGTCGCCATCAAGAAATGCCC
CAACGTGTTCGCGGATCCCCTGGACGCCAAGCGGATCGCGCGGGAGATCC
GTTTGCTCCGTCATTTCCATCACCCCAATATCGTAAGACTCACAGACTTA
CCCTTGCCCCCCAGCCATGACTTTACGGATGTGTACATGGTTACGGAACA
GATGGATACGGACTTGCACCGCGTAATTTATTCGGGCCAGAAGCTGACTG
AGGAGCACGTGCAGTTCTTCCTGTACCAGCTGCTGTGCGGCTTGAAACAC
ATTCACTCTGCGAATGTCATTCATCGGGACCTGAAGCCCTCCAACATCCT
TCTCAACGAGAACTGTGACCTGAAAATCTGTGACTTTGGCTTGGCACGAG
ACATGAGTGCTGACACCGCTGCCACTGAGCTTCCTAGTAATTTGACAGAG
TATGTGGTGACGCGATGGTACCGCGCGCCGGAGATAATGCTTTCGAGTCA
AGAGTACAGTAAGGCTATCGACGTGTGGGCCTCCGGCTGCATCTTCGGCG
AGATGCTGGGGCGCAAGCCCATGTTTCCTGGGAATGACTACATCCACCAG
CTGAAGCTCATCACCCGTACGGTGGGCACCCCGACGTCAGAAGACGACCT
CTGGTTCGTCAAGAACCCCAAAGCCAAGGTCTTCATGCTTTCCCTCCCTC
CCTCCCTGCCCCAAGACCTCTCCAAACGCTTCCCTGACGTCAGTCCTCAA
GCCCTCGACTTGATGTCTAAAATGCTACAGCTTGATTACCAGAAACGAAT
TTCTGTGGATGCCGCGTTGGAACATCCTTTTTTCTCCTCTGTCCGCGAAC
AGGCCATGGAATATGTTTGTCCGACAGCGGTTCCTTGGGGTGACGTGGAG
ACATCTCGGTTGACGAGGAGTAACTTACAAAAAATGGTCTTGAGAGACGT
GTCGTTTTTTCACCAGGCCGCGCAGGATTACTTGAATATCCATCGGGCGC
AGGCGATGATGAGGGGAGGGGGAGGGGGAGGAGGAGGGAGCCGGGAGAGA
GGGAGGGAGGGAGAGAGGGAGAGGGAGGCGGATGTTGCACGAATGATAGT
GGTGGCGGGGGACGGTGGGGTAGGGAGGGAGGAGGTGCCGGTGGAACAGC
AGATAGCCTTTGCACCGATACCAACAGGCAGTGGTAGCAGCGCTTACGGC
GGTGGCGGTGGGGGGCAGCAGTGCCAACAACATTAA

protein sequence of jgi.p|Nanoce1779_2|525657

>mRNA_3642-protein ID=mRNA_3642-protein|Name=jgi.p|Nanoce1779_2|525657|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MEEENDSASNCSTSSSPRYTVQVSGQDFVLDKRYDNIRPLGHGAYGVVIS
AQDKSMGGEKVAIKKCPNVFADPLDAKRIAREIRLLRHFHHPNIVRLTDL
PLPPSHDFTDVYMVTEQMDTDLHRVIYSGQKLTEEHVQFFLYQLLCGLKH
IHSANVIHRDLKPSNILLNENCDLKICDFGLARDMSADTAATELPSNLTE
YVVTRWYRAPEIMLSSQEYSKAIDVWASGCIFGEMLGRKPMFPGNDYIHQ
LKLITRTVGTPTSEDDLWFVKNPKAKVFMLSLPPSLPQDLSKRFPDVSPQ
ALDLMSKMLQLDYQKRISVDAALEHPFFSSVREQAMEYVCPTAVPWGDVE
TSRLTRSNLQKMVLRDVSFFHQAAQDYLNIHRAQAMMRGGGGGGGGSRER
GREGEREREADVARMIVVAGDGGVGREEVPVEQQIAFAPIPTGSGSSAYG
GGGGGQQCQQH*

mRNA from alignment at scaffold_6:842525..844216+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3642 ID=mRNA_3642|Name=jgi.p|Nanoce1779_2|525657|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp|location=Sequence derived from alignment at scaffold_6:842525..844216+ (Nannochloropsis oceanica)
ATGGAGGAAGAGAATGACAGTGCGAGTAATTGTAGCACCAGCAGCAGTCC
CCGGTATACGGTCCAAGTGTCCGGTCAGGATTTTGTGTTAGACAAGCGGT
ACGACAATATTCGTCCTCTGGGCCACGGGGCGTATGGTGTGGTGATCTCC
GCGCAGGACAAGTCGATGGGTGGCGAAAAAGTCGCCATCAAGAAATGCCC
CAACGTGTTCGCGGATCCCCTGGACGCCAAGCGGATCGCGCGGGAGATCC
GTTTGCTCCGTCATTTCCATCACCCCAATATCGTAAGACTCACAGACTTA
CCCTTGCCCCCCAGCCATGACTTTACGGATGTGTACATGGTTACGGAACA
GATGGATACGGACTTGCACCGCGTAATTTATTCGGGCCAGAAGCTGACTG
AGGAGCACGTGCAGTTCTTCCTGTACCAGCTGCTGTGCGGCTTGAAACAC
ATTCACTCTGCGAATGTCATTCATCGGGACCTGAAGGTGCAGAGGAAGGA
AGGAAGGGAGGGAGGGAGGAAGGGAGGGTTATAGTGATTGAGGGGTACCT
ACAGTGTTTCATCCTATTTACGACCTCCCCTCTCCCCTCCCTCCCCTCAT
CCTTTTCTCCATCCCCTCCTAGCCCTCCAACATCCTTCTCAACGAGAACT
GTGACCTGAAAATCTGTGACTTTGGCTTGGCACGAGACATGAGTGCTGAC
ACCGCTGCCACTGAGCTTCCTAGTAATTTGACAGAGTATGTGGTGACGCG
ATGGTACCGCGCGCCGGAGATAATGCTTTCGAGTCAAGAGTACAGTAAGG
CTATCGGTAAGTATGTCCTCTCCCCTATCCCCTCCTGGGTGCGTTATATC
CCTTTTATCACTTTTGTGCCACTCATGTGCCACGGGACATCGTCTACCAC
CCCCCAAAACGCGCCATTTACTTCCTCCTTTACCCCTCGCTCACTCCCTT
CTCTCCCTCTCTCCCTCCCACCTTAGACGTGTGGGCCTCCGGCTGCATCT
TCGGCGAGATGCTGGGGCGCAAGCCCATGTTTCCTGGGAATGACTACATC
CACCAGCTGAAGCTCATCACCCGTACGGTGGGCACCCCGACGTCAGAAGA
CGACCTCTGGTTCGTCAAGAACCCCAAAGCCAAGGTCTTCATGCTTTCCC
TCCCTCCCTCCCTGCCCCAAGACCTCTCCAAACGCTTCCCTGACGTCAGT
CCTCAAGCCCTCGACTTGATGTCTAAAATGCTACAGCTTGATTACCAGAA
ACGAATTTCTGTGGATGCCGCGTTGGAACATCCTTTTTTCTCCTCTGTCC
GCGAACAGGCCATGGAATATGTTTGTCCGACAGCGGTTCCTTGGGGTGAC
GTGGAGACATCTCGGTTGACGAGGAGTAACTTACAAAAAATGGTCTTGAG
AGACGTGTCGTTTTTTCACCAGGCCGCGCAGGATTACTTGAATATCCATC
GGGCGCAGGCGATGATGAGGGGAGGGGGAGGGGGAGGAGGAGGGAGCCGG
GAGAGAGGGAGGGAGGGAGAGAGGGAGAGGGAGGCGGATGTTGCACGAAT
GATAGTGGTGGCGGGGGACGGTGGGGTAGGGAGGGAGGAGGTGCCGGTGG
AACAGCAGATAGCCTTTGCACCGATACCAACAGGCAGTGGTAGCAGCGCT
TACGGCGGTGGCGGTGGGGGGCAGCAGTGCCAACAACATTAA

Coding sequence (CDS) from alignment at scaffold_6:842525..844216+

>mRNA_3642 ID=mRNA_3642|Name=jgi.p|Nanoce1779_2|525657|organism=Nannochloropsis oceanica|type=CDS|length=4158bp|location=Sequence derived from alignment at scaffold_6:842525..844216+ (Nannochloropsis oceanica)
ATGGAGGAAGAGAATGACAGTGCGAGTAATTGTAGCACCAGCAGCAGTCC
CCGGTATACGGTCCAAGTGTCCGGTCAGGATTTTGTGTTAGACAAGCGGT
ACGACAATATTCGTCCTCTGGGCCACGGGGCGTATGGTGTGGTGATCTCC
GCGCAGGACAAGTCGATGGGTGGCGAAAAAGTCGCCATCAAGAAATGCCC
CAACGTGTTCGCGGATCCCCTGGACGCCAAGCGGATCGCGCGGGAGATCC
GTTTGCTCCGTCATTTCCATCACCCCAATATCGTAAGACTCACAGACTTA
CCCTTGCCCCCCAGCCATGACTTTACGGATGTGTACATGGTTACGGAACA
GATGGATACGGACTTGCACCGCGTAATTTATTCGGGCCAGAAGCTGACTG
AGGAGCACGTGCAGTTCTTCCTGTACCAGCTGCTGTGCGGCTTGAAACAC
ATTCACTCTGCGAATGTCATTCATCGGGACCTGAAGCCCTCCAACATCCT
TCTCAACGAGAACTGTGACCTGAAAATCTGTGACTTTGGCTTGGCACGAG
ACATGAGTGCTGACACCGCTGCCACTGAGCTTCCTAGTAATTTGACAGAG
TATGTGGTGACGCGATGGTACCGCGCGCCGGAGATAATGCTTTCGAGTCA
AGAGTACAGTAAGGCTATCGACGTGTGGGCCTCCGGCTGCATCTTCGGCG
AGATGCTGGGGCGCAAGCCCATGTTTCCTGGGAATGACTACATCCACCAG
CTGAAGCTCATCACCCGTACGGTGGGCACCCCGACGTCAGAAGACGACCT
CTGGTTCGTCAAGAACCCCAAAGCCAAGGTCTTCATGCTTTCCCTCCCTC
CCTCCCTGCCCCAAGACCTCTCCAAACGCTTCCCTGACGTCAGTCCTCAA
GCCCTCGACTTGATGTCTAAAATGCTACAGCTTGATTACCAGAAACGAAT
TTCTGTGGATGCCGCGTTGGAACATCCTTTTTTCTCCTCTGTCCGCGAAC
AGGCCATGGAATATGTTTGTCCGACAGCGGTTCCTTGGGGTGACGTGGAG
ACATCTCGGTTGACGAGGAGTAACTTACAAAAAATGGTCTTGAGAGACGT
GTCGTTTTTTCACCAGGCCGCGCAGGATTACTTGAATATCCATCGGGCGC
AGGCGATGATGAGGGGAGGGGGAGGGGGAGGAGGAGGGAGCCGGGAGAGA
GGGAGGGAGGGAGAGAGGGAGAGGGAGGCGGATGTTGCACGAATGATAGT
GGTGGCGGGGGACGGTGGGGTAGGGAGGGAGGAGGTGCCGGTGGAACAGC
AGATAGCCTTTGCACCGATACCAACAGGCAGTGGTAGCAGCGCTTACGGC
GGTGGCGGTGGGGGGCAGCAGTGCCAACAACATTAAATGGAGGAAGAGAA
TGACAGTGCGAGTAATTGTAGCACCAGCAGCAGTCCCCGGTATACGGTCC
AAGTGTCCGGTCAGGATTTTGTGTTAGACAAGCGGTACGACAATATTCGT
CCTCTGGGCCACGGGGCGTATGGTGTGGTGATCTCCGCGCAGGACAAGTC
GATGGGTGGCGAAAAAGTCGCCATCAAGAAATGCCCCAACGTGTTCGCGG
ATCCCCTGGACGCCAAGCGGATCGCGCGGGAGATCCGTTTGCTCCGTCAT
TTCCATCACCCCAATATCGTAAGACTCACAGACTTACCCTTGCCCCCCAG
CCATGACTTTACGGATGTGTACATGGTTACGGAACAGATGGATACGGACT
TGCACCGCGTAATTTATTCGGGCCAGAAGCTGACTGAGGAGCACGTGCAG
TTCTTCCTGTACCAGCTGCTGTGCGGCTTGAAACACATTCACTCTGCGAA
TGTCATTCATCGGGACCTGAAGCCCTCCAACATCCTTCTCAACGAGAACT
GTGACCTGAAAATCTGTGACTTTGGCTTGGCACGAGACATGAGTGCTGAC
ACCGCTGCCACTGAGCTTCCTAGTAATTTGACAGAGTATGTGGTGACGCG
ATGGTACCGCGCGCCGGAGATAATGCTTTCGAGTCAAGAGTACAGTAAGG
CTATCGACGTGTGGGCCTCCGGCTGCATCTTCGGCGAGATGCTGGGGCGC
AAGCCCATGTTTCCTGGGAATGACTACATCCACCAGCTGAAGCTCATCAC
CCGTACGGTGGGCACCCCGACGTCAGAAGACGACCTCTGGTTCGTCAAGA
ACCCCAAAGCCAAGGTCTTCATGCTTTCCCTCCCTCCCTCCCTGCCCCAA
GACCTCTCCAAACGCTTCCCTGACGTCAGTCCTCAAGCCCTCGACTTGAT
GTCTAAAATGCTACAGCTTGATTACCAGAAACGAATTTCTGTGGATGCCG
CGTTGGAACATCCTTTTTTCTCCTCTGTCCGCGAACAGGCCATGGAATAT
GTTTGTCCGACAGCGGTTCCTTGGGGTGACGTGGAGACATCTCGGTTGAC
GAGGAGTAACTTACAAAAAATGGTCTTGAGAGACGTGTCGTTTTTTCACC
AGGCCGCGCAGGATTACTTGAATATCCATCGGGCGCAGGCGATGATGAGG
GGAGGGGGAGGGGGAGGAGGAGGGAGCCGGGAGAGAGGGAGGGAGGGAGA
GAGGGAGAGGGAGGCGGATGTTGCACGAATGATAGTGGTGGCGGGGGACG
GTGGGGTAGGGAGGGAGGAGGTGCCGGTGGAACAGCAGATAGCCTTTGCA
CCGATACCAACAGGCAGTGGTAGCAGCGCTTACGGCGGTGGCGGTGGGGG
GCAGCAGTGCCAACAACATTAAATGGAGGAAGAGAATGACAGTGCGAGTA
ATTGTAGCACCAGCAGCAGTCCCCGGTATACGGTCCAAGTGTCCGGTCAG
GATTTTGTGTTAGACAAGCGGTACGACAATATTCGTCCTCTGGGCCACGG
GGCGTATGGTGTGGTGATCTCCGCGCAGGACAAGTCGATGGGTGGCGAAA
AAGTCGCCATCAAGAAATGCCCCAACGTGTTCGCGGATCCCCTGGACGCC
AAGCGGATCGCGCGGGAGATCCGTTTGCTCCGTCATTTCCATCACCCCAA
TATCGTAAGACTCACAGACTTACCCTTGCCCCCCAGCCATGACTTTACGG
ATGTGTACATGGTTACGGAACAGATGGATACGGACTTGCACCGCGTAATT
TATTCGGGCCAGAAGCTGACTGAGGAGCACGTGCAGTTCTTCCTGTACCA
GCTGCTGTGCGGCTTGAAACACATTCACTCTGCGAATGTCATTCATCGGG
ACCTGAAGCCCTCCAACATCCTTCTCAACGAGAACTGTGACCTGAAAATC
TGTGACTTTGGCTTGGCACGAGACATGAGTGCTGACACCGCTGCCACTGA
GCTTCCTAGTAATTTGACAGAGTATGTGGTGACGCGATGGTACCGCGCGC
CGGAGATAATGCTTTCGAGTCAAGAGTACAGTAAGGCTATCGACGTGTGG
GCCTCCGGCTGCATCTTCGGCGAGATGCTGGGGCGCAAGCCCATGTTTCC
TGGGAATGACTACATCCACCAGCTGAAGCTCATCACCCGTACGGTGGGCA
CCCCGACGTCAGAAGACGACCTCTGGTTCGTCAAGAACCCCAAAGCCAAG
GTCTTCATGCTTTCCCTCCCTCCCTCCCTGCCCCAAGACCTCTCCAAACG
CTTCCCTGACGTCAGTCCTCAAGCCCTCGACTTGATGTCTAAAATGCTAC
AGCTTGATTACCAGAAACGAATTTCTGTGGATGCCGCGTTGGAACATCCT
TTTTTCTCCTCTGTCCGCGAACAGGCCATGGAATATGTTTGTCCGACAGC
GGTTCCTTGGGGTGACGTGGAGACATCTCGGTTGACGAGGAGTAACTTAC
AAAAAATGGTCTTGAGAGACGTGTCGTTTTTTCACCAGGCCGCGCAGGAT
TACTTGAATATCCATCGGGCGCAGGCGATGATGAGGGGAGGGGGAGGGGG
AGGAGGAGGGAGCCGGGAGAGAGGGAGGGAGGGAGAGAGGGAGAGGGAGG
CGGATGTTGCACGAATGATAGTGGTGGCGGGGGACGGTGGGGTAGGGAGG
GAGGAGGTGCCGGTGGAACAGCAGATAGCCTTTGCACCGATACCAACAGG
CAGTGGTAGCAGCGCTTACGGCGGTGGCGGTGGGGGGCAGCAGTGCCAAC
AACATTAA

Synonyms

Publications