jgi.p|Nanoce1779_2|577120, mRNA_364 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577120
Unique NamemRNA_364
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1058
Alignment locationscaffold_3:906380..907805 +

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Properties
Property NameValue
TranscriptId577206
TrackFilteredModels2
ProteinId577120
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:906380..907805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577120gene_364Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577120mRNA_364-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_364CDS_364Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_364 ID=mRNA_364|Name=jgi.p|Nanoce1779_2|577120|organism=Nannochloropsis oceanica|type=mRNA|length=1058bp
CAGGGGCAGGCCGGGCAAGCAGCACCTCCAGCTGCTGCACCGGTAGCAAC
AGCAACAGGAGAAGTTGCGTCAGCAGTCTGCTCAAGCAGCAGCGCAAGCA
GCAGGAGCAGGATGGAGGGCCGGGAACCATGCCCGTATCGCATTGTCGAC
GATGTGGGTGGAGCCTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGCA
CTACTTCAAGGGTGTGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGAG
GCATTTCGTCTGTCAAGGCGCGGGCGCCGCTTGTTGGGGGTGCTTTTGCC
GTATGGGGACTCTGCTTTGCCAGTTTCGATTGTAGCATAGCGGCTGTACG
AAAGAAGGAGGATCCTTGGAATGCAATCCTATCAGGCGCTTGCACCGGCG
GTCTTCTGGCGATAAGAGCAGGGCCCAAGGCCGCGGGCAAGAATGCAGTG
ATTGGTGGTTTGGTCCTTGCCATGATCGAGGGTGCTTCGATTGCGATCAC
GAAGGTAGGTGAGAGAGGAAGGGAGAAGAAGGGATATAGAACGTTTGACA
ATATGGAGGAGAAGAAGAGGGAGAAAGAGAAGGATAAAAAGATGAGAGGC
AGAGTTGTAGGCATGGGTGGAAGAAAGCAAAACCAGACCATCGAGGAGAC
CGTGTGACTGATTCATTTTTTTATCCCCCCTTCCCTCCTTCCCTCCTTCC
CTCCCCTCACTTGACATCAATCCTTTTTCCTCGACCTTCCCCTCCACAAA
CAGTTTTTCGCTCCTCCGGCCTCGACTCCCGAAATGGGCGGGCCGGCCAT
GCCCGACCCGACTCTTCCACCCACCGGTCCGGGTATGCTTTCGGGCTTTG
GTGGTGGCGGTGGGGGCGGGGGGTATGATGGGAGTGGTTCGTCGACTCCG
TCTTATGCTGATGATCCTGATGCGCCCTCGACAGGCGGCGGATTTGACAC
GGGCGTGAGTGGAAGTTGGGGAGGGGATGGAGGAGGAGGAGGAGGAGGGG
GAGGGGCAGGAGGGATGGGGGGAGGGTACTCGTCAGTACCAGAGCCGAGT
GGAGGGGG
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protein sequence of jgi.p|Nanoce1779_2|577120

>mRNA_364-protein ID=mRNA_364-protein|Name=jgi.p|Nanoce1779_2|577120|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISS
VKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLA
IRAGPKAAGKNAVIGGLVLAMIEGASIAITKVGERGREKKGYRTFDNMEE
KKREKEKDKKMRGRVVGMGGRKQNQTIEETV*
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mRNA from alignment at scaffold_3:906380..907805+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_364 ID=mRNA_364|Name=jgi.p|Nanoce1779_2|577120|organism=Nannochloropsis oceanica|type=mRNA|length=1426bp|location=Sequence derived from alignment at scaffold_3:906380..907805+ (Nannochloropsis oceanica)
CAGGGGCAGGCCGGGCAAGCAGCACCTCCAGCTGCTGCACCGGTAGCAAC
AGCAACAGGAGAAGTTGCGTCAGCAGTCTGCTCAAGCAGCAGCGCAAGCA
GCAGGAGCAGGATGGAGGGCCGGGAACCATGCCCGTATCGCATTGTCGAC
GATGTGGGTGGAGCCTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGCA
CTACTTCAAGGGTGTGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGAG
GCATTTCGTCTGTCAAGGCGCGGGCGCCGCTTGTTGGGGGTAGGTGTTAG
GCTGGAGATATGTTTGGGGAGGGCTGGGACGATTGTGGTACAGCTTATAG
CCTGGTTGAGATGCTTTCATGCTCCTGGTACCTCTTGACATGGTGCTTAT
GGGTTTACCGGAAATAAGGGGGATAAATGGGGAATGTGGTCGTGAAAGAG
AGATTGCGTTGGGTTATGCGTGCATTGTGTCTACAATATTCCTGCTCCGT
ACTGCCACGACACTCATTCATCTTTCTCTCTCCTGGCCTTACGTTCAATT
ACGTTTAACAGGTGCTTTTGCCGTATGGGGACTCTGCTTTGCCAGTTTCG
ATTGTAGCATAGCGGCTGTACGAAAGAAGGTTCGTTTAATCTGAGGGTTG
TAGCGGGTAGTCCCTCAACCGCCTTTCTCTCATGCCTTGGTTTTCTCATT
TATATTCACCTTTGGATAACCACAGGAGGATCCTTGGAATGCAATCCTAT
CAGGCGCTTGCACCGGCGGTCTTCTGGCGATAAGAGCAGGGCCCAAGGCC
GCGGGCAAGAATGCAGTGATTGGTGGTTTGGTCCTTGCCATGATCGAGGG
TGCTTCGATTGCGATCACGAAGGTAGGTGAGAGAGGAAGGGAGAAGAAGG
GATATAGAACGTTTGACAATATGGAGGAGAAGAAGAGGGAGAAAGAGAAG
GATAAAAAGATGAGAGGCAGAGTTGTAGGCATGGGTGGAAGAAAGCAAAA
CCAGACCATCGAGGAGACCGTGTGACTGATTCATTTTTTTATCCCCCCTT
CCCTCCTTCCCTCCTTCCCTCCCCTCACTTGACATCAATCCTTTTTCCTC
GACCTTCCCCTCCACAAACAGTTTTTCGCTCCTCCGGCCTCGACTCCCGA
AATGGGCGGGCCGGCCATGCCCGACCCGACTCTTCCACCCACCGGTCCGG
GTATGCTTTCGGGCTTTGGTGGTGGCGGTGGGGGCGGGGGGTATGATGGG
AGTGGTTCGTCGACTCCGTCTTATGCTGATGATCCTGATGCGCCCTCGAC
AGGCGGCGGATTTGACACGGGCGTGAGTGGAAGTTGGGGAGGGGATGGAG
GAGGAGGAGGAGGAGGGGGAGGGGCAGGAGGGATGGGGGGAGGGTACTCG
TCAGTACCAGAGCCGAGTGGAGGGGG
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Coding sequence (CDS) from alignment at scaffold_3:906380..907805+

>mRNA_364 ID=mRNA_364|Name=jgi.p|Nanoce1779_2|577120|organism=Nannochloropsis oceanica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_3:906380..907805+ (Nannochloropsis oceanica)
ATGGAGGGCCGGGAACCATGCCCGTATCGCATTGTCGACGATGTGGGTGG
AGCCTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGCACTACTTCAAGG
GTGTGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGAGGCATTTCGTCT
GTCAAGGCGCGGGCGCCGCTTGTTGGGGGTGCTTTTGCCGTATGGGGACT
CTGCTTTGCCAGTTTCGATTGTAGCATAGCGGCTGTACGAAAGAAGGAGG
ATCCTTGGAATGCAATCCTATCAGGCGCTTGCACCGGCGGTCTTCTGGCG
ATAAGAGCAGGGCCCAAGGCCGCGGGCAAGAATGCAGTGATTGGTGGTTT
GGTCCTTGCCATGATCGAGGGTGCTTCGATTGCGATCACGAAGGTAGGTG
AGAGAGGAAGGGAGAAGAAGGGATATAGAACGTTTGACAATATGGAGGAG
AAGAAGAGGGAGAAAGAGAAGGATAAAAAGATGAGAGGCAGAGTTGTAGG
CATGGGTGGAAGAAAGCAAAACCAGACCATCGAGGAGACCGTGTGAATGG
AGGGCCGGGAACCATGCCCGTATCGCATTGTCGACGATGTGGGTGGAGCC
TTTTGCATGGGGTCCATCGGGGGAGGGATTTGGCACTACTTCAAGGGTGT
GCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGAGGCATTTCGTCTGTCA
AGGCGCGGGCGCCGCTTGTTGGGGGTGCTTTTGCCGTATGGGGACTCTGC
TTTGCCAGTTTCGATTGTAGCATAGCGGCTGTACGAAAGAAGGAGGATCC
TTGGAATGCAATCCTATCAGGCGCTTGCACCGGCGGTCTTCTGGCGATAA
GAGCAGGGCCCAAGGCCGCGGGCAAGAATGCAGTGATTGGTGGTTTGGTC
CTTGCCATGATCGAGGGTGCTTCGATTGCGATCACGAAGGTAGGTGAGAG
AGGAAGGGAGAAGAAGGGATATAGAACGTTTGACAATATGGAGGAGAAGA
AGAGGGAGAAAGAGAAGGATAAAAAGATGAGAGGCAGAGTTGTAGGCATG
GGTGGAAGAAAGCAAAACCAGACCATCGAGGAGACCGTGTGAATGGAGGG
CCGGGAACCATGCCCGTATCGCATTGTCGACGATGTGGGTGGAGCCTTTT
GCATGGGGTCCATCGGGGGAGGGATTTGGCACTACTTCAAGGGTGTGCGG
AACGCACCTAAAGGGGAGCGGCTGCGGGGAGGCATTTCGTCTGTCAAGGC
GCGGGCGCCGCTTGTTGGGGGTGCTTTTGCCGTATGGGGACTCTGCTTTG
CCAGTTTCGATTGTAGCATAGCGGCTGTACGAAAGAAGGAGGATCCTTGG
AATGCAATCCTATCAGGCGCTTGCACCGGCGGTCTTCTGGCGATAAGAGC
AGGGCCCAAGGCCGCGGGCAAGAATGCAGTGATTGGTGGTTTGGTCCTTG
CCATGATCGAGGGTGCTTCGATTGCGATCACGAAGGTAGGTGAGAGAGGA
AGGGAGAAGAAGGGATATAGAACGTTTGACAATATGGAGGAGAAGAAGAG
GGAGAAAGAGAAGGATAAAAAGATGAGAGGCAGAGTTGTAGGCATGGGTG
GAAGAAAGCAAAACCAGACCATCGAGGAGACCGTGTGA
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Synonyms
Publications