jgi.p|Nanoce1779_2|368881, mRNA_3638 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|368881
Unique NamemRNA_3638
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length446
Alignment locationscaffold_6:837497..837942 +

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Properties
Property NameValue
TranscriptId368967
TrackFilteredModels2
ProteinId368881
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:837497..837942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|368881gene_3638Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|368881mRNA_3638-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3638CDS_3638Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3638 ID=mRNA_3638|Name=jgi.p|Nanoce1779_2|368881|organism=Nannochloropsis oceanica|type=mRNA|length=446bp
GGTACGCTTGGATTGTGTTGGACTTTTATGCTTTCACTTCTTCGTCGCTG
AGACTCTCTCATCATCTCTCTATTACGCATTATTGGTCTGACGCTGACGC
TGTTCTTGCAGTCATGGGTCTCATCAACTTCGTTGGCCATGACTGAGTCT
CTCGATTTAATTCCCTCCCCCAGCCGCCATGCGGATTTTTCTTTAAAACA
TTTCTTTCTGTTGTTGCTGCTGGTTCACTGCTCATTGCTGCTGGCATATG
CTGCTCCTACAGTCCTGGCATTTTACACCTGCTTTCATGTCATCCCCGTC
ACTTCATTTTTCTTAAATGTCTTCTTCTGCAAGGCTATTATGTGTCGTTG
CGCTTCAAGGTGAGTTACGCACCTCCCTCGCTCTATCCATCCCTTGTGAT
AAGCCCACATCCCTTCTAATTTGCCTCACCATTAGTAAGAATGCAA
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protein sequence of jgi.p|Nanoce1779_2|368881

>mRNA_3638-protein ID=mRNA_3638-protein|Name=jgi.p|Nanoce1779_2|368881|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MTESLDLIPSPSRHADFSLKHFFLLLLLVHCSLLLAYAAPTVLAFYTCFH
VIPVTSFFLNVFFCKAIMCRCASR*
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mRNA from alignment at scaffold_6:837497..837942+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3638 ID=mRNA_3638|Name=jgi.p|Nanoce1779_2|368881|organism=Nannochloropsis oceanica|type=mRNA|length=446bp|location=Sequence derived from alignment at scaffold_6:837497..837942+ (Nannochloropsis oceanica)
GGTACGCTTGGATTGTGTTGGACTTTTATGCTTTCACTTCTTCGTCGCTG
AGACTCTCTCATCATCTCTCTATTACGCATTATTGGTCTGACGCTGACGC
TGTTCTTGCAGTCATGGGTCTCATCAACTTCGTTGGCCATGACTGAGTCT
CTCGATTTAATTCCCTCCCCCAGCCGCCATGCGGATTTTTCTTTAAAACA
TTTCTTTCTGTTGTTGCTGCTGGTTCACTGCTCATTGCTGCTGGCATATG
CTGCTCCTACAGTCCTGGCATTTTACACCTGCTTTCATGTCATCCCCGTC
ACTTCATTTTTCTTAAATGTCTTCTTCTGCAAGGCTATTATGTGTCGTTG
CGCTTCAAGGTGAGTTACGCACCTCCCTCGCTCTATCCATCCCTTGTGAT
AAGCCCACATCCCTTCTAATTTGCCTCACCATTAGTAAGAATGCAA
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Coding sequence (CDS) from alignment at scaffold_6:837497..837942+

>mRNA_3638 ID=mRNA_3638|Name=jgi.p|Nanoce1779_2|368881|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_6:837497..837942+ (Nannochloropsis oceanica)
ATGACTGAGTCTCTCGATTTAATTCCCTCCCCCAGCCGCCATGCGGATTT
TTCTTTAAAACATTTCTTTCTGTTGTTGCTGCTGGTTCACTGCTCATTGC
TGCTGGCATATGCTGCTCCTACAGTCCTGGCATTTTACACCTGCTTTCAT
GTCATCCCCGTCACTTCATTTTTCTTAAATGTCTTCTTCTGCAAGGCTAT
TATGTGTCGTTGCGCTTCAAGGTGA
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Synonyms
Publications