jgi.p|Nanoce1779_2|663325, mRNA_3635 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|663325
Unique Name	mRNA_3635
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1010
Alignment location	scaffold_6:829684..830785 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	663411
Track	FilteredModels2
ProteinId	663325

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:829684..830785 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|663325	gene_3635	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|663325	mRNA_3635-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3635	CDS_3635	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:829684..830785+
coding sequence from alignment at scaffold_6:829684..830785+

mRNA sequence

>mRNA_3635 ID=mRNA_3635|Name=jgi.p|Nanoce1779_2|663325|organism=Nannochloropsis oceanica|type=mRNA|length=1010bp
ATGGCTCGCGTCACGCGCCATCGATATGCTGGGCGCTCGCTCAAAGTCTA
CCACGGTAGTTTCTTTCGGCGCCTCACGGATGGGATGGTCGTGCACTTGG
TGATCATTGCTGCGGTGGTCGTTATCTACGGGTACGTCTTCCGCGTGGCC
TTTCGTACGTACATCTGGAGGTTTGGGAGAGAATCGGTCGCGTTTTCATT
CATGGAAATGATTACCATAGCTTTTCGCGGGCCCGTGGACGCGATCGGCT
ACTCCCCCGAGGACTGGCTTGTCCGCTTGAACCGCTTTGTGTGCAACGGA
TGTCGACGACGGAATGCATCCGGTGGTTTGCCTCACTCGAAGTCGTCCAT
GGCTGTGGCTTCCGGCCCAAGCGTCGAGCCCAAGGAAGACCGACACTTGT
TTATTATTACTTACAAAATGGCTGAATGTGATAGCAAGGCTTTGGGGCCT
AAGGAGTTTGCGGGATGGATTCCACGCGATAGGGATGTGTATGTACTGGT
GCTAGGGGAGGACATTTTGGCTCACTTGGGGGGGCCTGAGAAGTACGTGA
TGTGTCGCCGAGCGATAGGGTCGACAAATCGCGCGTTAGGGTACCTTGGA
TTTATTGCTTTGCTGGTATTGGCGAGAAGGGAGGAGGTACGGGCGAACCG
TTTCTTGCTGCACGAGAGTAAGACGAGCGCGCTGGCGCGTGGGAAGAATT
TGGGGGTGACTGTCGCGCAAAACAAGGGAGGCGTGGGATTGGCTTTCAGG
TATTACGACACTACGTTTGCTTTGCTTGCGTGTCATTTATCGTCGGATTT
GAAGGGTCGTTCCAGGCTGAAGAGGAGGAATCAGGACGCGTGGCGGTTGA
CGTACGAGACGAATTTGTGGAGGGAAGATTATTTGCTCGATGTCCACCAC
CAGCACCACGTGTGTTTGTTTTTGGGGATTTGAATTATCGACTAAGGAGA
ACGAATGCAGGGGAGTTCTTGGAAGATGTAGCAGGGATTTGTAGGGTGGA
AAGGGATGAG

protein sequence of jgi.p|Nanoce1779_2|663325

>mRNA_3635-protein ID=mRNA_3635-protein|Name=jgi.p|Nanoce1779_2|663325|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MARVTRHRYAGRSLKVYHGSFFRRLTDGMVVHLVIIAAVVVIYGYVFRVA
FRTYIWRFGRESVAFSFMEMITIAFRGPVDAIGYSPEDWLVRLNRFVCNG
CRRRNASGGLPHSKSSMAVASGPSVEPKEDRHLFIITYKMAECDSKALGP
KEFAGWIPRDRDVYVLVLGEDILAHLGGPEKYVMCRRAIGSTNRALGYLG
FIALLVLARREEVRANRFLLHESKTSALARGKNLGVTVAQNKGGVGLAFR
YYDTTFALLACHLSSDLKGRSRLKRRNQDAWRLTYETNLWREDYLLDVHH
QHHVCLFLGI*

mRNA from alignment at scaffold_6:829684..830785+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3635 ID=mRNA_3635|Name=jgi.p|Nanoce1779_2|663325|organism=Nannochloropsis oceanica|type=mRNA|length=1102bp|location=Sequence derived from alignment at scaffold_6:829684..830785+ (Nannochloropsis oceanica)
ATGGCTCGCGTCACGCGCCATCGATATGCTGGGCGCTCGCTCAAAGTCTA
CCACGGTAGTTTCTTTCGGCGCCTCACGGATGGGATGGTCGTGCACTTGG
TGATCATTGCTGCGGTGGTCGTTATCTACGGGTACGTCTTCCGCGTGGCC
TTTCGTACGTACATCTGGAGGTTTGGGAGAGAATCGGTCGCGTTTTCATT
CATGGAAATGATTACCATAGCTTTTCGCGGGCCCGTGGACGCGATCGGCT
ACTCCCCCGAGGACTGGCTTGTCCGCTTGAACCGCTTTGTGTGCAACGGA
TGTCGACGACGGAATGCATCCGGTGGTTTGCCTCACTCGAAGTCGTCCAT
GGCTGTGGCTTCCGGCCCAAGCGTCGAGCCCGTCCGTCTCAGCTTGATGG
GAAAAGCGTACCCCTTCCTTTTTTCACCGACCCCCCCGTTCCTCAGAAGG
AAGACCGACACTTGTTTATTATTACTTACAAAATGGCTGAATGTGATAGC
AAGGCTTTGGGGCCTAAGGAGTTTGCGGGATGGATTCCACGCGATAGGGA
TGTGTATGTACTGGTGGTGTAGGAGTGCATGATTTATCAGCAGCTAGGGG
AGGACATTTTGGCTCACTTGGGGGGGCCTGAGAAGTACGTGATGTGTCGC
CGAGCGATAGGGTCGACAAATCGCGCGTTAGGGTACCTTGGATTTATTGC
TTTGCTGGTATTGGCGAGAAGGGAGGAGGTACGGGCGAACCGTTTCTTGC
TGCACGAGAGTAAGACGAGCGCGCTGGCGCGTGGGAAGAATTTGGGGGTG
ACTGTCGCGCAAAACAAGGGAGGCGTGGGATTGGCTTTCAGGTATTACGA
CACTACGTTTGCTTTGCTTGCGTGTCATTTATCGTCGGATTTGAAGGGTC
GTTCCAGGCTGAAGAGGAGGAATCAGGACGCGTGGCGGTTGACGTACGAG
ACGAATTTGTGGAGGGAAGATTATTTGCTCGATGTCCACCACCAGCACCA
CGTGTGTTTGTTTTTGGGGATTTGAATTATCGACTAAGGAGAACGAATGC
AGGGGAGTTCTTGGAAGATGTAGCAGGGATTTGTAGGGTGGAAAGGGATG
AG

Coding sequence (CDS) from alignment at scaffold_6:829684..830785+

>mRNA_3635 ID=mRNA_3635|Name=jgi.p|Nanoce1779_2|663325|organism=Nannochloropsis oceanica|type=CDS|length=2799bp|location=Sequence derived from alignment at scaffold_6:829684..830785+ (Nannochloropsis oceanica)
ATGGCTCGCGTCACGCGCCATCGATATGCTGGGCGCTCGCTCAAAGTCTA
CCACGGTAGTTTCTTTCGGCGCCTCACGGATGGGATGGTCGTGCACTTGG
TGATCATTGCTGCGGTGGTCGTTATCTACGGGTACGTCTTCCGCGTGGCC
TTTCGTACGTACATCTGGAGGTTTGGGAGAGAATCGGTCGCGTTTTCATT
CATGGAAATGATTACCATAGCTTTTCGCGGGCCCGTGGACGCGATCGGCT
ACTCCCCCGAGGACTGGCTTGTCCGCTTGAACCGCTTTGTGTGCAACGGA
TGTCGACGACGGAATGCATCCGGTGGTTTGCCTCACTCGAAGTCGTCCAT
GGCTGTGGCTTCCGGCCCAAGCGTCGAGCCCAAGGAAGACCGACACTTGT
TTATTATTACTTACAAAATGGCTGAATGTGATAGCAAGGCTTTGGGGCCT
AAGGAGTTTGCGGGATGGATTCCACGCGATAGGGATGTGTATGTACTGGT
GCTAGGGGAGGACATTTTGGCTCACTTGGGGGGGCCTGAGAAGTACGTGA
TGTGTCGCCGAGCGATAGGGTCGACAAATCGCGCGTTAGGGTACCTTGGA
TTTATTGCTTTGCTGGTATTGGCGAGAAGGGAGGAGGTACGGGCGAACCG
TTTCTTGCTGCACGAGAGTAAGACGAGCGCGCTGGCGCGTGGGAAGAATT
TGGGGGTGACTGTCGCGCAAAACAAGGGAGGCGTGGGATTGGCTTTCAGG
TATTACGACACTACGTTTGCTTTGCTTGCGTGTCATTTATCGTCGGATTT
GAAGGGTCGTTCCAGGCTGAAGAGGAGGAATCAGGACGCGTGGCGGTTGA
CGTACGAGACGAATTTGTGGAGGGAAGATTATTTGCTCGATGTCCACCAC
CAGCACCACGTGTGTTTGTTTTTGGGGATTTGAATGGCTCGCGTCACGCG
CCATCGATATGCTGGGCGCTCGCTCAAAGTCTACCACGGTAGTTTCTTTC
GGCGCCTCACGGATGGGATGGTCGTGCACTTGGTGATCATTGCTGCGGTG
GTCGTTATCTACGGGTACGTCTTCCGCGTGGCCTTTCGTACGTACATCTG
GAGGTTTGGGAGAGAATCGGTCGCGTTTTCATTCATGGAAATGATTACCA
TAGCTTTTCGCGGGCCCGTGGACGCGATCGGCTACTCCCCCGAGGACTGG
CTTGTCCGCTTGAACCGCTTTGTGTGCAACGGATGTCGACGACGGAATGC
ATCCGGTGGTTTGCCTCACTCGAAGTCGTCCATGGCTGTGGCTTCCGGCC
CAAGCGTCGAGCCCAAGGAAGACCGACACTTGTTTATTATTACTTACAAA
ATGGCTGAATGTGATAGCAAGGCTTTGGGGCCTAAGGAGTTTGCGGGATG
GATTCCACGCGATAGGGATGTGTATGTACTGGTGCTAGGGGAGGACATTT
TGGCTCACTTGGGGGGGCCTGAGAAGTACGTGATGTGTCGCCGAGCGATA
GGGTCGACAAATCGCGCGTTAGGGTACCTTGGATTTATTGCTTTGCTGGT
ATTGGCGAGAAGGGAGGAGGTACGGGCGAACCGTTTCTTGCTGCACGAGA
GTAAGACGAGCGCGCTGGCGCGTGGGAAGAATTTGGGGGTGACTGTCGCG
CAAAACAAGGGAGGCGTGGGATTGGCTTTCAGGTATTACGACACTACGTT
TGCTTTGCTTGCGTGTCATTTATCGTCGGATTTGAAGGGTCGTTCCAGGC
TGAAGAGGAGGAATCAGGACGCGTGGCGGTTGACGTACGAGACGAATTTG
TGGAGGGAAGATTATTTGCTCGATGTCCACCACCAGCACCACGTGTGTTT
GTTTTTGGGGATTTGAATGGCTCGCGTCACGCGCCATCGATATGCTGGGC
GCTCGCTCAAAGTCTACCACGGTAGTTTCTTTCGGCGCCTCACGGATGGG
ATGGTCGTGCACTTGGTGATCATTGCTGCGGTGGTCGTTATCTACGGGTA
CGTCTTCCGCGTGGCCTTTCGTACGTACATCTGGAGGTTTGGGAGAGAAT
CGGTCGCGTTTTCATTCATGGAAATGATTACCATAGCTTTTCGCGGGCCC
GTGGACGCGATCGGCTACTCCCCCGAGGACTGGCTTGTCCGCTTGAACCG
CTTTGTGTGCAACGGATGTCGACGACGGAATGCATCCGGTGGTTTGCCTC
ACTCGAAGTCGTCCATGGCTGTGGCTTCCGGCCCAAGCGTCGAGCCCAAG
GAAGACCGACACTTGTTTATTATTACTTACAAAATGGCTGAATGTGATAG
CAAGGCTTTGGGGCCTAAGGAGTTTGCGGGATGGATTCCACGCGATAGGG
ATGTGTATGTACTGGTGCTAGGGGAGGACATTTTGGCTCACTTGGGGGGG
CCTGAGAAGTACGTGATGTGTCGCCGAGCGATAGGGTCGACAAATCGCGC
GTTAGGGTACCTTGGATTTATTGCTTTGCTGGTATTGGCGAGAAGGGAGG
AGGTACGGGCGAACCGTTTCTTGCTGCACGAGAGTAAGACGAGCGCGCTG
GCGCGTGGGAAGAATTTGGGGGTGACTGTCGCGCAAAACAAGGGAGGCGT
GGGATTGGCTTTCAGGTATTACGACACTACGTTTGCTTTGCTTGCGTGTC
ATTTATCGTCGGATTTGAAGGGTCGTTCCAGGCTGAAGAGGAGGAATCAG
GACGCGTGGCGGTTGACGTACGAGACGAATTTGTGGAGGGAAGATTATTT
GCTCGATGTCCACCACCAGCACCACGTGTGTTTGTTTTTGGGGATTTGA

Synonyms

Publications