jgi.p|Nanoce1779_2|582841, mRNA_3632 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582841
Unique Name	mRNA_3632
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1253
Alignment location	scaffold_6:818140..819392 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582927
Track	FilteredModels2
ProteinId	582841

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:818140..819392 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582841	gene_3632	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582841	mRNA_3632-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3632	CDS_3632	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:818140..819392+
coding sequence from alignment at scaffold_6:818140..819392+

mRNA sequence

>mRNA_3632 ID=mRNA_3632|Name=jgi.p|Nanoce1779_2|582841|organism=Nannochloropsis oceanica|type=mRNA|length=1253bp
CAGCCACAGCTATGCCGAACCCGCACCTCGAAGCGAAGGCGCGGGAGCTT
CTCAAGCATGCAATCTGTACAGCGCTAGCCGCCCAAGAGGAGATGCGCGC
TCTGCGGGAGAGGAATGGCAATGAGCAAGTGAAATGCCATGGCGGCAGCC
TCCGTACGTCCAGCGACGACGATGGTAGTCAGGGAATGGAAGATCAAAGC
ACTTTCTACAACAAGAAGATTGTCTCCCCGCCACCCGCCTCGAACAATAG
GAGTCTGCGCCATAATGATGGTGGTGATGGCGCGGTGCGGCCTCGGCGTC
CGAAAGAACGGAGGATGAGAAGCATTGACCAAGGCGATGTGGACAAGGAG
GAATACGAAAAGATGCAACTACAACAGTCGCGGGATTCTTTCCCTTCTCT
ATCAAATTCCGTTTCGTCCTCTTTCTTGACCATAAAGCAGAAACAGCGGG
ACGCAAAGCTTCACGAGCTCAAGGCACGCGTCGAGCGATTGCTTCTCCGG
GAAGAGCATATAGACGTGGTGGAGAGTAAAGAAAATGAACAGGACGAGGA
TATATATCTCAATGAGAGGGAAAGACACTCCATGATCCAAGGGGGCGATC
TCGTCATCCCATCACATGTCCCGGCCGAGAGTCGGCGAAACGCGTCTCCC
CCCTCTCCACCGCAACCCGCAAGATGCCTACTCCATCTGCATTCCGAATC
TAGGATTGATCATCACCCCATATCATCGAAAGATGCCGCCCTCTCTACCT
CCTCCTTATTCTCCTCCTCCTCTTCACCCACCCTACTCGAACGCGCCCTA
GCTGCAAAACGACGGGCAAAACTGCTCTCTGCTTCTGGCGCCTCTTCCTC
CTCACCCTCTTCCTCCACCTTAACGTCATACAATACGCCAACAGAAGCAG
CACCAACAGCACCAGCGGTAACAGGGGCATCAACGATACAAGTAAGTTTT
GATGCGTCCAGGCAGTCGTGGCAGCAACAAAGTACGGCGAGTAGCATACA
TCACGACGCATGGGTCTGGCCTCGTTTGACGGAGGATGAAATGCAGGATG
CAAATGCAAAGCGATAGGCTCTGCGGCCTTCTGGGATTAATAGGAAATGA
TAGACATCTTCCTCTCTTTCGAGGAAAAACCCAAAAGTATGACTGAAAGA
AGGAAAAGAAGGGGTGAGCGTAGTCATATGACTAGATGACGAGCTGCTTG
TTGTTTAATTGCAAAGTGAGCAGGCCAAAGAAAGTATTTAACACAAGGTT
TGA

protein sequence of jgi.p|Nanoce1779_2|582841

>mRNA_3632-protein ID=mRNA_3632-protein|Name=jgi.p|Nanoce1779_2|582841|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MPNPHLEAKARELLKHAICTALAAQEEMRALRERNGNEQVKCHGGSLRTS
SDDDGSQGMEDQSTFYNKKIVSPPPASNNRSLRHNDGGDGAVRPRRPKER
RMRSIDQGDVDKEEYEKMQLQQSRDSFPSLSNSVSSSFLTIKQKQRDAKL
HELKARVERLLLREEHIDVVESKENEQDEDIYLNERERHSMIQGGDLVIP
SHVPAESRRNASPPSPPQPARCLLHLHSESRIDHHPISSKDAALSTSSLF
SSSSSPTLLERALAAKRRAKLLSASGASSSSPSSSTLTSYNTPTEAAPTA
PAVTGASTIQVSFDASRQSWQQQSTASSIHHDAWVWPRLTEDEMQDANAK
R*

mRNA from alignment at scaffold_6:818140..819392+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3632 ID=mRNA_3632|Name=jgi.p|Nanoce1779_2|582841|organism=Nannochloropsis oceanica|type=mRNA|length=1253bp|location=Sequence derived from alignment at scaffold_6:818140..819392+ (Nannochloropsis oceanica)
CAGCCACAGCTATGCCGAACCCGCACCTCGAAGCGAAGGCGCGGGAGCTT
CTCAAGCATGCAATCTGTACAGCGCTAGCCGCCCAAGAGGAGATGCGCGC
TCTGCGGGAGAGGAATGGCAATGAGCAAGTGAAATGCCATGGCGGCAGCC
TCCGTACGTCCAGCGACGACGATGGTAGTCAGGGAATGGAAGATCAAAGC
ACTTTCTACAACAAGAAGATTGTCTCCCCGCCACCCGCCTCGAACAATAG
GAGTCTGCGCCATAATGATGGTGGTGATGGCGCGGTGCGGCCTCGGCGTC
CGAAAGAACGGAGGATGAGAAGCATTGACCAAGGCGATGTGGACAAGGAG
GAATACGAAAAGATGCAACTACAACAGTCGCGGGATTCTTTCCCTTCTCT
ATCAAATTCCGTTTCGTCCTCTTTCTTGACCATAAAGCAGAAACAGCGGG
ACGCAAAGCTTCACGAGCTCAAGGCACGCGTCGAGCGATTGCTTCTCCGG
GAAGAGCATATAGACGTGGTGGAGAGTAAAGAAAATGAACAGGACGAGGA
TATATATCTCAATGAGAGGGAAAGACACTCCATGATCCAAGGGGGCGATC
TCGTCATCCCATCACATGTCCCGGCCGAGAGTCGGCGAAACGCGTCTCCC
CCCTCTCCACCGCAACCCGCAAGATGCCTACTCCATCTGCATTCCGAATC
TAGGATTGATCATCACCCCATATCATCGAAAGATGCCGCCCTCTCTACCT
CCTCCTTATTCTCCTCCTCCTCTTCACCCACCCTACTCGAACGCGCCCTA
GCTGCAAAACGACGGGCAAAACTGCTCTCTGCTTCTGGCGCCTCTTCCTC
CTCACCCTCTTCCTCCACCTTAACGTCATACAATACGCCAACAGAAGCAG
CACCAACAGCACCAGCGGTAACAGGGGCATCAACGATACAAGTAAGTTTT
GATGCGTCCAGGCAGTCGTGGCAGCAACAAAGTACGGCGAGTAGCATACA
TCACGACGCATGGGTCTGGCCTCGTTTGACGGAGGATGAAATGCAGGATG
CAAATGCAAAGCGATAGGCTCTGCGGCCTTCTGGGATTAATAGGAAATGA
TAGACATCTTCCTCTCTTTCGAGGAAAAACCCAAAAGTATGACTGAAAGA
AGGAAAAGAAGGGGTGAGCGTAGTCATATGACTAGATGACGAGCTGCTTG
TTGTTTAATTGCAAAGTGAGCAGGCCAAAGAAAGTATTTAACACAAGGTT
TGA

Coding sequence (CDS) from alignment at scaffold_6:818140..819392+

>mRNA_3632 ID=mRNA_3632|Name=jgi.p|Nanoce1779_2|582841|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_6:818140..819392+ (Nannochloropsis oceanica)
ATGCCGAACCCGCACCTCGAAGCGAAGGCGCGGGAGCTTCTCAAGCATGC
AATCTGTACAGCGCTAGCCGCCCAAGAGGAGATGCGCGCTCTGCGGGAGA
GGAATGGCAATGAGCAAGTGAAATGCCATGGCGGCAGCCTCCGTACGTCC
AGCGACGACGATGGTAGTCAGGGAATGGAAGATCAAAGCACTTTCTACAA
CAAGAAGATTGTCTCCCCGCCACCCGCCTCGAACAATAGGAGTCTGCGCC
ATAATGATGGTGGTGATGGCGCGGTGCGGCCTCGGCGTCCGAAAGAACGG
AGGATGAGAAGCATTGACCAAGGCGATGTGGACAAGGAGGAATACGAAAA
GATGCAACTACAACAGTCGCGGGATTCTTTCCCTTCTCTATCAAATTCCG
TTTCGTCCTCTTTCTTGACCATAAAGCAGAAACAGCGGGACGCAAAGCTT
CACGAGCTCAAGGCACGCGTCGAGCGATTGCTTCTCCGGGAAGAGCATAT
AGACGTGGTGGAGAGTAAAGAAAATGAACAGGACGAGGATATATATCTCA
ATGAGAGGGAAAGACACTCCATGATCCAAGGGGGCGATCTCGTCATCCCA
TCACATGTCCCGGCCGAGAGTCGGCGAAACGCGTCTCCCCCCTCTCCACC
GCAACCCGCAAGATGCCTACTCCATCTGCATTCCGAATCTAGGATTGATC
ATCACCCCATATCATCGAAAGATGCCGCCCTCTCTACCTCCTCCTTATTC
TCCTCCTCCTCTTCACCCACCCTACTCGAACGCGCCCTAGCTGCAAAACG
ACGGGCAAAACTGCTCTCTGCTTCTGGCGCCTCTTCCTCCTCACCCTCTT
CCTCCACCTTAACGTCATACAATACGCCAACAGAAGCAGCACCAACAGCA
CCAGCGGTAACAGGGGCATCAACGATACAAGTAAGTTTTGATGCGTCCAG
GCAGTCGTGGCAGCAACAAAGTACGGCGAGTAGCATACATCACGACGCAT
GGGTCTGGCCTCGTTTGACGGAGGATGAAATGCAGGATGCAAATGCAAAG
CGATAG

Synonyms

Publications