jgi.p|Nanoce1779_2|582838, mRNA_3631 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582838
Unique NamemRNA_3631
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1074
Alignment locationscaffold_6:816648..817938 -

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Properties
Property NameValue
TranscriptId582924
TrackFilteredModels2
ProteinId582838
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:816648..817938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582838gene_3631Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582838mRNA_3631-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3631CDS_3631Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3631 ID=mRNA_3631|Name=jgi.p|Nanoce1779_2|582838|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp
ACAGGTCTGAAGCTTTTGGAAGAGTCCATTCTTTGCTCTCATCATGTGTC
GCGGAGCCGCGACAACCTCCCCAACCCCCAAGCTGTCCCACCGCCCCCTC
CTCCTCATGCTCCTCCTCATCACTCTCACGCACGCCCTTGTCGTCCAACT
ACCTACACTTCGCAATCGGCGCAACGCTTTGATGCGCATGACTGTCGCGT
CCTCCTCCAACGATCGCAAGGGCCACCTGCAATCACTGGCCTCCATCCTG
CTTGGCGCCGCTTTATCCAGCCCACCGCCATCCCTCCGACAAGCACTTGC
TGTGGGAAACGACGAGTACGACGTGACCTTTGATGTCAAGCAGCCATTAG
GCCTGGCACTCGAGGATTTTGGCAATCGCGACGGCAAGTATCGCACTTAT
GTCAGTAAAACGCTCCGTGGGTCTCAAGCAACGGGCAAGGGAATCAGAAT
TCCCGCGTTGGTTGTGGCGGTAAATGGACAGAATGTTGAGGGACTACCCA
GGAAAATGGTGGCGCAATTGATTCGAGACACGATTGAAGGACGGAATGGG
ATGGGGAAAGGAGGGGTGGTGACCGTGACGTTTCGAGATCCGTCCAAGTT
CATGGAATTACTGAACGACAAAACAGCCGCCCCCGGCGACGAAATCACCA
CGCAACTCGCCCCTCAAACCAAGGCGCGGGACGCTCAAACCCTTGCGGTC
AAGAAAACCTTCGTCCCCGAGATCTGTCAGACAGGGGCCATGTATGGCGA
CTTGCTGGAAGTGAAGTACACGACCTCTCTCGCGGATGGGACATTTTTGG
ACGCCACTGGTGTCAGCACCCCGGGAAGAGGGGGCGATTCGACAGTTTAT
TTTGTGTTGGGTGAGCAAGTGGCGGGAACGGTGCCAAAGGGGTGGGATCT
GGCGTTGGTGGGCGCGTGCGTGGGGGAGCAGAGGGTGATTCGAACGCCGA
GTGTCCTGGCGTACGGGAATAAGGGCCTCAAAAGACGAGGAATCCCCCCG
GATGCGACAATAATTTACAATGTGGAGGTGATTGGGATCAACGGGAATAA
TTTGCCCAGATAGAGGGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|582838

>mRNA_3631-protein ID=mRNA_3631-protein|Name=jgi.p|Nanoce1779_2|582838|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MCRGAATTSPTPKLSHRPLLLMLLLITLTHALVVQLPTLRNRRNALMRMT
VASSSNDRKGHLQSLASILLGAALSSPPPSLRQALAVGNDEYDVTFDVKQ
PLGLALEDFGNRDGKYRTYVSKTLRGSQATGKGIRIPALVVAVNGQNVEG
LPRKMVAQLIRDTIEGRNGMGKGGVVTVTFRDPSKFMELLNDKTAAPGDE
ITTQLAPQTKARDAQTLAVKKTFVPEICQTGAMYGDLLEVKYTTSLADGT
FLDATGVSTPGRGGDSTVYFVLGEQVAGTVPKGWDLALVGACVGEQRVIR
TPSVLAYGNKGLKRRGIPPDATIIYNVEVIGINGNNLPR*
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mRNA from alignment at scaffold_6:816648..817938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3631 ID=mRNA_3631|Name=jgi.p|Nanoce1779_2|582838|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp|location=Sequence derived from alignment at scaffold_6:816648..817938- (Nannochloropsis oceanica)
ACAGGTCTGAAGCTTTTGGAAGAGTCCATTCTTTGCTCTCATCATGTGTC
GCGGAGCCGCGACAACCTCCCCAACCCCCAAGCTGTCCCACCGCCCCCTC
CTCCTCATGCTCCTCCTCATCACTCTCACGCACGCCCTTGTCGTCCAACT
ACCTACACTTCGCAATCGGCGCAACGCTTTGATGCGCATGACTGTCGCGT
CCTCCTCCAACGATCGCAAGGGCCACCTGCAATCACTGGCCTCCATCCTG
CTTGGCGCCGCTTTATCCAGCCCACCGCCATCCCTCCGACAAGCACTTGC
TGTGGGAAACGACGAGTACGACGTGACCTTTGATGTCAAGCAGCCATTAG
GCCTGGCACTCGAGGATTTTGGCAATCGCGACGGCAAGTATCGCACTTAT
GTCAGTAAAACGCTCCGTGGGTCTCAAGCAACGGGCAAGGGAATCAGAAT
TCCCGCGTTGGTTGTGGCGGTAAATGGACAGAATGTTGAGGGACTACCCA
GGAAAATGGTGGCGCAATTGATTCGAGACACGATTGAAGGACGGAATGGG
ATGGGGAAAGGAGGGGTGGTGACCGTGACGTTTCGAGATCCGTCCAAGTT
CATGGAATTACTGGTAAGTTTGTGACTTAAGTGTTTGTATGCGAGTTAGT
GCTTGAATTTTAAATTCCATTTTTCTGTGCAGTAGTGTGATTAGTTCCCT
TTTTCTGGTTGTCCGAGGGCTGCTTTCATCTCGGCCAAAACCACTCAAGC
ACTTACCTCAACAGATCCCCCATTCCCCTCCTCCCTCCGTTCCCCTTCCC
TCCCTCCCTCCCTTCCTCACCTGACAACAGAACGACAAAACAGCCGCCCC
CGGCGACGAAATCACCACGCAACTCGCCCCTCAAACCAAGGCGCGGGACG
CTCAAACCCTTGCGGTCAAGAAAACCTTCGTCCCCGAGATCTGTCAGACA
GGGGCCATGTATGGCGACTTGCTGGAAGTGAAGTACACGACCTCTCTCGC
GGATGGGACATTTTTGGACGCCACTGGTGTCAGCACCCCGGGAAGAGGGG
GCGATTCGACAGTTTATTTTGTGTTGGGTGAGCAAGTGGCGGGAACGGTG
CCAAAGGGGTGGGATCTGGCGTTGGTGGGCGCGTGCGTGGGGGAGCAGAG
GGTGATTCGAACGCCGAGTGTCCTGGCGTACGGGAATAAGGGCCTCAAAA
GACGAGGAATCCCCCCGGATGCGACAATAATTTACAATGTGGAGGTGATT
GGGATCAACGGGAATAATTTGCCCAGATAGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_6:816648..817938-

>mRNA_3631 ID=mRNA_3631|Name=jgi.p|Nanoce1779_2|582838|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_6:816648..817938- (Nannochloropsis oceanica)
AACGACAAAACAGCCGCCCCCGGCGACGAAATCACCACGCAACTCGCCCC
TCAAACCAAGGCGCGGGACGCTCAAACCCTTGCGGTCAAGAAAACCTTCG
TCCCCGAGATCTGTCAGACAGGGGCCATGTATGGCGACTTGCTGGAAGTG
AAGTACACGACCTCTCTCGCGGATGGGACATTTTTGGACGCCACTGGTGT
CAGCACCCCGGGAAGAGGGGGCGATTCGACAGTTTATTTTGTGTTGGGTG
AGCAAGTGGCGGGAACGGTGCCAAAGGGGTGGGATCTGGCGTTGGTGGGC
GCGTGCGTGGGGGAGCAGAGGGTGATTCGAACGCCGAGTGTCCTGGCGTA
CGGGAATAAGGGCCTCAAAAGACGAGGAATCCCCCCGGATGCGACAATAA
TTTACAATGTGGAGGTGATTGGGATCAACGGGAATAATTTGCCCAGATAG
ATGTGTCGCGGAGCCGCGACAACCTCCCCAACCCCCAAGCTGTCCCACCG
CCCCCTCCTCCTCATGCTCCTCCTCATCACTCTCACGCACGCCCTTGTCG
TCCAACTACCTACACTTCGCAATCGGCGCAACGCTTTGATGCGCATGACT
GTCGCGTCCTCCTCCAACGATCGCAAGGGCCACCTGCAATCACTGGCCTC
CATCCTGCTTGGCGCCGCTTTATCCAGCCCACCGCCATCCCTCCGACAAG
CACTTGCTGTGGGAAACGACGAGTACGACGTGACCTTTGATGTCAAGCAG
CCATTAGGCCTGGCACTCGAGGATTTTGGCAATCGCGACGGCAAGTATCG
CACTTATGTCAGTAAAACGCTCCGTGGGTCTCAAGCAACGGGCAAGGGAA
TCAGAATTCCCGCGTTGGTTGTGGCGGTAAATGGACAGAATGTTGAGGGA
CTACCCAGGAAAATGGTGGCGCAATTGATTCGAGACACGATTGAAGGACG
GAATGGGATGGGGAAAGGAGGGGTGGTGACCGTGACGTTTCGAGATCCGT
CCAAGTTCATGGAATTACTGAACGACAAAACAGCCGCCCCCGGCGACGAA
ATCACCACGCAACTCGCCCCTCAAACCAAGGCGCGGGACGCTCAAACCCT
TGCGGTCAAGAAAACCTTCGTCCCCGAGATCTGTCAGACAGGGGCCATGT
ATGGCGACTTGCTGGAAGTGAAGTACACGACCTCTCTCGCGGATGGGACA
TTTTTGGACGCCACTGGTGTCAGCACCCCGGGAAGAGGGGGCGATTCGAC
AGTTTATTTTGTGTTGGGTGAGCAAGTGGCGGGAACGGTGCCAAAGGGGT
GGGATCTGGCGTTGGTGGGCGCGTGCGTGGGGGAGCAGAGGGTGATTCGA
ACGCCGAGTGTCCTGGCGTACGGGAATAAGGGCCTCAAAAGACGAGGAAT
CCCCCCGGATGCGACAATAATTTACAATGTGGAGGTGATTGGGATCAACG
GGAATAATTTGCCCAGATAGATGTGTCGCGGAGCCGCGACAACCTCCCCA
ACCCCCAAGCTGTCCCACCGCCCCCTCCTCCTCATGCTCCTCCTCATCAC
TCTCACGCACGCCCTTGTCGTCCAACTACCTACACTTCGCAATCGGCGCA
ACGCTTTGATGCGCATGACTGTCGCGTCCTCCTCCAACGATCGCAAGGGC
CACCTGCAATCACTGGCCTCCATCCTGCTTGGCGCCGCTTTATCCAGCCC
ACCGCCATCCCTCCGACAAGCACTTGCTGTGGGAAACGACGAGTACGACG
TGACCTTTGATGTCAAGCAGCCATTAGGCCTGGCACTCGAGGATTTTGGC
AATCGCGACGGCAAGTATCGCACTTATGTCAGTAAAACGCTCCGTGGGTC
TCAAGCAACGGGCAAGGGAATCAGAATTCCCGCGTTGGTTGTGGCGGTAA
ATGGACAGAATGTTGAGGGACTACCCAGGAAAATGGTGGCGCAATTGATT
CGAGACACGATTGAAGGACGGAATGGGATGGGGAAAGGAGGGGTGGTGAC
CGTGACGTTTCGAGATCCGTCCAAGTTCATGGAATTACTG
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Synonyms
Publications