jgi.p|Nanoce1779_2|582816, mRNA_3626 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582816
Unique NamemRNA_3626
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1056
Alignment locationscaffold_6:800882..802498 -

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Properties
Property NameValue
TranscriptId582902
TrackFilteredModels2
ProteinId582816
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:800882..802498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582816gene_3626Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582816mRNA_3626-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3626CDS_3626Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3626 ID=mRNA_3626|Name=jgi.p|Nanoce1779_2|582816|organism=Nannochloropsis oceanica|type=mRNA|length=1056bp
AGCAAGTAGCACTCTTCCCAGCCAAACACCACGATGTTCAGCTCTACCGT
CCGTCGTTGCCTGCAGCGCACTGCCGGCGTCCGTGCCTTCTCCTCCTCCA
TGGCCCGTGCGTCGGCCTCCTCCGCCAAAGGCGCTTCTGTCCAGGCACTT
GGTGGCTTGGCCCTGGTCGCGGCAGGCGCAGCATGGGCCGCTCAAGAAAT
GCGCTTTGGCGCGCCTGCTCACTGCTCGGCGGCGGCCAAGGTGCCCCATA
CAGGCTTACCGGGGACGGACAAGGAGCGCACCTTCATCGCCATCAAGCCC
GATGGCGTGCAGCGCGGCCTCATTGCCGCCATTATCGCCCGCTTCGAGAA
CAAGGGCTTCAAGCTTGTGGGTATGAAGATGTTGTGGCCCACCAAGGCAA
AGGCGGAGAGCCACTACTCTGACCTTTCCACCAAGCCGTTTTTCGCGGGC
CTCGTAGCCTACTTCTCGTCCGGGCCCATCATCGCCATGGTCTGGGAGGG
CAAGGACGCCATCAAGACCGGCCGTGTCCTCCTAGGAGCGACCAACCCCG
CCGCGGCCGTGCCTGGCACTATCCGTGGTGACATGGCCATCAGCGTCGGC
CGCAATATTTGTCACGGCTCGGACGGACCGGAGTCGGCAGTGCATGAGAT
CGGGAACTGGTTCACGGAGGCGGAGATTTCGGACTACACCCGTAGCTTGG
ATGAGTGGATTGTGGCGGACAACTAGGGCGGAGGGGAGATAGGGCATTAG
AATCGAAAGAAGGAGAAGAAAGGAGTGGGGGATCTTATTATTCCTCCCCT
CTCTTCCTTTCACAGTGGCCTTAAATGGTGGTGCCCGTGGAGGAATAGTA
GGTTAGAGGAAGTTTAGAGCAAGTTGATGGATAGCTGACTGTAAATGCGC
TTTGAAGGAAGGCGAGGCGGGTAAGAGAGTAGAGGCAGTGATGTCTCCTT
CTTGTTACTTTGTCTTGTCTCCTTTCTTGGCTTCTCTTTGCGTAGACACT
GCGGAGCTTTAAGAACCAGTGGAGAAAACATATCAGCAAACAAATATATC
GGGATT
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protein sequence of jgi.p|Nanoce1779_2|582816

>mRNA_3626-protein ID=mRNA_3626-protein|Name=jgi.p|Nanoce1779_2|582816|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MFSSTVRRCLQRTAGVRAFSSSMARASASSAKGASVQALGGLALVAAGAA
WAAQEMRFGAPAHCSAAAKVPHTGLPGTDKERTFIAIKPDGVQRGLIAAI
IARFENKGFKLVGMKMLWPTKAKAESHYSDLSTKPFFAGLVAYFSSGPII
AMVWEGKDAIKTGRVLLGATNPAAAVPGTIRGDMAISVGRNICHGSDGPE
SAVHEIGNWFTEAEISDYTRSLDEWIVADN*
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mRNA from alignment at scaffold_6:800882..802498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3626 ID=mRNA_3626|Name=jgi.p|Nanoce1779_2|582816|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp|location=Sequence derived from alignment at scaffold_6:800882..802498- (Nannochloropsis oceanica)
AGCAAGTAGCACTCTTCCCAGCCAAACACCACGATGTTCAGCTCTACCGT
CCGTCGTTGCCTGCAGCGCACTGCCGGCGTCCGTGCCTTCTCCTCCTCCA
TGTACGTACCTATTGTCCCGTTGGTGGATGGAGACGAATTGGCAAGTCTG
GATAGGGGTGAGGGAGGGTATGATAAATGGTTGAGACGACCTGAAGTAAA
GCGTCTATGTGTATCTACATATGCACACACTCAAGAAAAAGCATAAAGCG
CTTTGGCGCATAGATGTTCTGGGTCACAAGCATGTCTGAAAGTCTTTCAG
ACACATAGCGCTGCCTTTTTGATCGCTTTTTCTCATGCCCACCCCTCAAT
TCTCCGTTCCACAGGGCCCGTGCGTCGGCCTCCTCCGCCAAAGGCGCTTC
TGTCCAGGCACTTGGTGGCTTGGCCCTGGTCGCGGCAGGCGCAGCATGGG
CCGCTCAAGAAATGCGCTTTGGCGCGCCTGCTCACTGCTCGGCGGCGGCC
AAGGTGCCCCATACAGGCTTACCGGGGACGGACAAGGTTCGTGAGAGAGG
GCCAGAAATGCCTCAGAGGAGGAAAATATCGTTTGTTTTACGACTTATCA
TGGGTTTCACCCTTTCTACCTCCCCACAGGAGCGCACCTTCATCGCCATC
AAGCCCGATGGCGTGCAGCGCGGCCTCATTGCCGCCATTATCGCCCGCTT
CGAGAACAAGGGCTTCAAGCTTGTGGGTATGAAGATGTTGTGGCCCACCA
AGGCAAAGGCGGAGAGCCACTACTCTGACCTTTCCACCAAGCCGTTTTTC
GCGGTACGTTTGGAAGGGTAAATGGGCTCGTGAGAGGTGGTAGTGATTCT
TCTCCTGGTTTCGCTCCGTCCCTTCCTTTATCTTCTTTTCTTGTCGTCGT
CCACCGTTACTTGCGTGTCTCTTCATATCCTTCTTCAATCAAAGGCGAAA
TGTTTCTCCTTTCCCCCTCCTCCTCCTTCCATGCCTTCCCGTCCTCCCCT
CAAAACAGGGCCTCGTAGCCTACTTCTCGTCCGGGCCCATCATCGCCATG
GTCTGGGAGGGCAAGGACGCCATCAAGACCGGCCGTGTCCTCCTAGGAGC
GACCAACCCCGCCGCGGCCGTGCCTGGCACTATCCGTGGTGACATGGCCA
TCAGCGTCGGCCGCAATATTTGTCACGGCTCGGACGGACCGGAGTCGGCA
GTGCATGAGATCGGGAACTGGTTCACGGAGGCGGAGATTTCGGACTACAC
CCGTAGCTTGGATGAGTGGATTGTGGCGGACAACTAGGGCGGAGGGGAGA
TAGGGCATTAGAATCGAAAGAAGGAGAAGAAAGGAGTGGGGGATCTTATT
ATTCCTCCCCTCTCTTCCTTTCACAGTGGCCTTAAATGGTGGTGCCCGTG
GAGGAATAGTAGGTTAGAGGAAGTTTAGAGCAAGTTGATGGATAGCTGAC
TGTAAATGCGCTTTGAAGGAAGGCGAGGCGGGTAAGAGAGTAGAGGCAGT
GATGTCTCCTTCTTGTTACTTTGTCTTGTCTCCTTTCTTGGCTTCTCTTT
GCGTAGACACTGCGGAGCTTTAAGAACCAGTGGAGAAAACATATCAGCAA
ACAAATATATCGGGATT
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Coding sequence (CDS) from alignment at scaffold_6:800882..802498-

>mRNA_3626 ID=mRNA_3626|Name=jgi.p|Nanoce1779_2|582816|organism=Nannochloropsis oceanica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_6:800882..802498- (Nannochloropsis oceanica)
GGCCTCGTAGCCTACTTCTCGTCCGGGCCCATCATCGCCATGGTCTGGGA
GGGCAAGGACGCCATCAAGACCGGCCGTGTCCTCCTAGGAGCGACCAACC
CCGCCGCGGCCGTGCCTGGCACTATCCGTGGTGACATGGCCATCAGCGTC
GGCCGCAATATTTGTCACGGCTCGGACGGACCGGAGTCGGCAGTGCATGA
GATCGGGAACTGGTTCACGGAGGCGGAGATTTCGGACTACACCCGTAGCT
TGGATGAGTGGATTGTGGCGGACAACTAGGAGCGCACCTTCATCGCCATC
AAGCCCGATGGCGTGCAGCGCGGCCTCATTGCCGCCATTATCGCCCGCTT
CGAGAACAAGGGCTTCAAGCTTGTGGGTATGAAGATGTTGTGGCCCACCA
AGGCAAAGGCGGAGAGCCACTACTCTGACCTTTCCACCAAGCCGTTTTTC
GCGGGCCCGTGCGTCGGCCTCCTCCGCCAAAGGCGCTTCTGTCCAGGCAC
TTGGTGGCTTGGCCCTGGTCGCGGCAGGCGCAGCATGGGCCGCTCAAGAA
ATGCGCTTTGGCGCGCCTGCTCACTGCTCGGCGGCGGCCAAGGTGCCCCA
TACAGGCTTACCGGGGACGGACAAGATGTTCAGCTCTACCGTCCGTCGTT
GCCTGCAGCGCACTGCCGGCGTCCGTGCCTTCTCCTCCTCCATGGCCTCG
TAGCCTACTTCTCGTCCGGGCCCATCATCGCCATGGTCTGGGAGGGCAAG
GACGCCATCAAGACCGGCCGTGTCCTCCTAGGAGCGACCAACCCCGCCGC
GGCCGTGCCTGGCACTATCCGTGGTGACATGGCCATCAGCGTCGGCCGCA
ATATTTGTCACGGCTCGGACGGACCGGAGTCGGCAGTGCATGAGATCGGG
AACTGGTTCACGGAGGCGGAGATTTCGGACTACACCCGTAGCTTGGATGA
GTGGATTGTGGCGGACAACTAGGAGCGCACCTTCATCGCCATCAAGCCCG
ATGGCGTGCAGCGCGGCCTCATTGCCGCCATTATCGCCCGCTTCGAGAAC
AAGGGCTTCAAGCTTGTGGGTATGAAGATGTTGTGGCCCACCAAGGCAAA
GGCGGAGAGCCACTACTCTGACCTTTCCACCAAGCCGTTTTTCGCGGGCC
CGTGCGTCGGCCTCCTCCGCCAAAGGCGCTTCTGTCCAGGCACTTGGTGG
CTTGGCCCTGGTCGCGGCAGGCGCAGCATGGGCCGCTCAAGAAATGCGCT
TTGGCGCGCCTGCTCACTGCTCGGCGGCGGCCAAGGTGCCCCATACAGGC
TTACCGGGGACGGACAAGATGTTCAGCTCTACCGTCCGTCGTTGCCTGCA
GCGCACTGCCGGCGTCCGTGCCTTCTCCTCCTCCATGGCCTCGTAGCCTA
CTTCTCGTCCGGGCCCATCATCGCCATGGTCTGGGAGGGCAAGGACGCCA
TCAAGACCGGCCGTGTCCTCCTAGGAGCGACCAACCCCGCCGCGGCCGTG
CCTGGCACTATCCGTGGTGACATGGCCATCAGCGTCGGCCGCAATATTTG
TCACGGCTCGGACGGACCGGAGTCGGCAGTGCATGAGATCGGGAACTGGT
TCACGGAGGCGGAGATTTCGGACTACACCCGTAGCTTGGATGAGTGGATT
GTGGCGGACAACTAGGAGCGCACCTTCATCGCCATCAAGCCCGATGGCGT
GCAGCGCGGCCTCATTGCCGCCATTATCGCCCGCTTCGAGAACAAGGGCT
TCAAGCTTGTGGGTATGAAGATGTTGTGGCCCACCAAGGCAAAGGCGGAG
AGCCACTACTCTGACCTTTCCACCAAGCCGTTTTTCGCGGGCCCGTGCGT
CGGCCTCCTCCGCCAAAGGCGCTTCTGTCCAGGCACTTGGTGGCTTGGCC
CTGGTCGCGGCAGGCGCAGCATGGGCCGCTCAAGAAATGCGCTTTGGCGC
GCCTGCTCACTGCTCGGCGGCGGCCAAGGTGCCCCATACAGGCTTACCGG
GGACGGACAAGATGTTCAGCTCTACCGTCCGTCGTTGCCTGCAGCGCACT
GCCGGCGTCCGTGCCTTCTCCTCCTCCATGGCCTCGTAGCCTACTTCTCG
TCCGGGCCCATCATCGCCATGGTCTGGGAGGGCAAGGACGCCATCAAGAC
CGGCCGTGTCCTCCTAGGAGCGACCAACCCCGCCGCGGCCGTGCCTGGCA
CTATCCGTGGTGACATGGCCATCAGCGTCGGCCGCAATATTTGTCACGGC
TCGGACGGACCGGAGTCGGCAGTGCATGAGATCGGGAACTGGTTCACGGA
GGCGGAGATTTCGGACTACACCCGTAGCTTGGATGAGTGGATTGTGGCGG
ACAACTAGGAGCGCACCTTCATCGCCATCAAGCCCGATGGCGTGCAGCGC
GGCCTCATTGCCGCCATTATCGCCCGCTTCGAGAACAAGGGCTTCAAGCT
TGTGGGTATGAAGATGTTGTGGCCCACCAAGGCAAAGGCGGAGAGCCACT
ACTCTGACCTTTCCACCAAGCCGTTTTTCGCGGGCCCGTGCGTCGGCCTC
CTCCGCCAAAGGCGCTTCTGTCCAGGCACTTGGTGGCTTGGCCCTGGTCG
CGGCAGGCGCAGCATGGGCCGCTCAAGAAATGCGCTTTGGCGCGCCTGCT
CACTGCTCGGCGGCGGCCAAGGTGCCCCATACAGGCTTACCGGGGACGGA
CAAGATGTTCAGCTCTACCGTCCGTCGTTGCCTGCAGCGCACTGCCGGCG
TCCGTGCCTTCTCCTCCTCCAT
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Synonyms
Publications