jgi.p|Nanoce1779_2|582814, mRNA_3625 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582814
Unique NamemRNA_3625
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1275
Alignment locationscaffold_6:799607..800881 +

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Properties
Property NameValue
TranscriptId582900
TrackFilteredModels2
ProteinId582814
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:799607..800881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582814gene_3625Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582814mRNA_3625-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3625CDS_3625Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3625 ID=mRNA_3625|Name=jgi.p|Nanoce1779_2|582814|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp
GAGATGACCGGAGATAAGCAACCCGATGGAAAAGAGAGCTAGCTATGAGA
AGGTGAGGGAAGGAGGGGAGAGAGGGAAGGAGAGAGGGAGAGAGAAGGGC
AGGAGAAAAAAAGGAGAGAGGCTCGAATCATCCGCTAGCTACCACAAATG
TAGACACAGTCTCTGCTTCGGCAAAAATAGAAACGAATGCGTTGTTGAGG
CAACTCGTCAGAAATCGCAACTGGAGCGATGTTTCTTTGTTGCTCTCCGA
GCTTGTGCTCTGCTGATTTAATGAGCTGGCCCTGCGATAACGGGCGGAGG
AGCTCTGTTCTCGCTCTCTGCTTTTCTAACTAGCTAAAAATACATAACGC
CACTGGCGCATTCAAGCGAGTGAAACGCGCCTTGCAGGGCGCCGCCTCCC
AAACCAACCTCCTCACCCACCAAACCACCCAACCCATCTACCCCTACAAA
GAGATTCCCATGACAGACGAATGGGAACCTCTACCCAAGCGGCGCAAACA
GAAGAGCTATCGACAGTACCCTGTCATTGCCGAGAATGCGCCACAGCCAC
CCGAACAGCAGCAGCAACAACAGGAGCCCCAACAGCCCAATCACCTGGAG
GAGGAGGCATCGGCCGAGACACCACAGCTGACCCGTCGCGCCGCACCCGA
CAAGTCGCAGATGCAGAGAGTGACGGCCGCTGTAGAGGAGCGGGCAGCAC
AACACCGCCCTGATCGGGGAGAAGGCATGGGTAATGACGGCGTTGCTGGT
GAGTTTTACGAGTACTTGGATCATACGGCGGACGTGCAGCTCCATGCGTG
GGGCAAGAACCTGAAGGAGGCATTTGAGCATATTGTGCCGTGCATGCTGA
ATTACATGACGGACCTGTCCAAGGTCGAAGTGGACCCCAGGCTCACACAG
ACGTTTGAGGTAGAGGGTCATGACTTGTCCTCCTTGCTCTTTGCCTGGTT
GGATGAGGTTTTGTTTCGGTTTAGCTCCGAAGCGTTCGTGTGCAAGTCGG
TCACCATCCTGACTTTCGAACGCCCTGCTGCTGTGATGATAGGTTCGGCC
AAAGACACTCCTGTGGGGATCGCCAAGGTCGAAGGTGGAGAAAGACAAGG
GAAGTACAAGATTAAGGTAAGGGCGGAGGGGGAGACGTTCAGCCTGGCTA
AGCATCCGCAGGGGACGGAGGTAAAAGCAATTACTTATTCGGCAATGCAG
ATCCACGAGATGGAGCATAGAACAGATCTGTACGTCATAATCGACATTTG
AAAGAAAGTAAAAAGAAACGCCAAG
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protein sequence of jgi.p|Nanoce1779_2|582814

>mRNA_3625-protein ID=mRNA_3625-protein|Name=jgi.p|Nanoce1779_2|582814|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MTDEWEPLPKRRKQKSYRQYPVIAENAPQPPEQQQQQQEPQQPNHLEEEA
SAETPQLTRRAAPDKSQMQRVTAAVEERAAQHRPDRGEGMGNDGVAGEFY
EYLDHTADVQLHAWGKNLKEAFEHIVPCMLNYMTDLSKVEVDPRLTQTFE
VEGHDLSSLLFAWLDEVLFRFSSEAFVCKSVTILTFERPAAVMIGSAKDT
PVGIAKVEGGERQGKYKIKVRAEGETFSLAKHPQGTEVKAITYSAMQIHE
MEHRTDLYVIIDI*
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mRNA from alignment at scaffold_6:799607..800881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3625 ID=mRNA_3625|Name=jgi.p|Nanoce1779_2|582814|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp|location=Sequence derived from alignment at scaffold_6:799607..800881+ (Nannochloropsis oceanica)
GAGATGACCGGAGATAAGCAACCCGATGGAAAAGAGAGCTAGCTATGAGA
AGGTGAGGGAAGGAGGGGAGAGAGGGAAGGAGAGAGGGAGAGAGAAGGGC
AGGAGAAAAAAAGGAGAGAGGCTCGAATCATCCGCTAGCTACCACAAATG
TAGACACAGTCTCTGCTTCGGCAAAAATAGAAACGAATGCGTTGTTGAGG
CAACTCGTCAGAAATCGCAACTGGAGCGATGTTTCTTTGTTGCTCTCCGA
GCTTGTGCTCTGCTGATTTAATGAGCTGGCCCTGCGATAACGGGCGGAGG
AGCTCTGTTCTCGCTCTCTGCTTTTCTAACTAGCTAAAAATACATAACGC
CACTGGCGCATTCAAGCGAGTGAAACGCGCCTTGCAGGGCGCCGCCTCCC
AAACCAACCTCCTCACCCACCAAACCACCCAACCCATCTACCCCTACAAA
GAGATTCCCATGACAGACGAATGGGAACCTCTACCCAAGCGGCGCAAACA
GAAGAGCTATCGACAGTACCCTGTCATTGCCGAGAATGCGCCACAGCCAC
CCGAACAGCAGCAGCAACAACAGGAGCCCCAACAGCCCAATCACCTGGAG
GAGGAGGCATCGGCCGAGACACCACAGCTGACCCGTCGCGCCGCACCCGA
CAAGTCGCAGATGCAGAGAGTGACGGCCGCTGTAGAGGAGCGGGCAGCAC
AACACCGCCCTGATCGGGGAGAAGGCATGGGTAATGACGGCGTTGCTGGT
GAGTTTTACGAGTACTTGGATCATACGGCGGACGTGCAGCTCCATGCGTG
GGGCAAGAACCTGAAGGAGGCATTTGAGCATATTGTGCCGTGCATGCTGA
ATTACATGACGGACCTGTCCAAGGTCGAAGTGGACCCCAGGCTCACACAG
ACGTTTGAGGTAGAGGGTCATGACTTGTCCTCCTTGCTCTTTGCCTGGTT
GGATGAGGTTTTGTTTCGGTTTAGCTCCGAAGCGTTCGTGTGCAAGTCGG
TCACCATCCTGACTTTCGAACGCCCTGCTGCTGTGATGATAGGTTCGGCC
AAAGACACTCCTGTGGGGATCGCCAAGGTCGAAGGTGGAGAAAGACAAGG
GAAGTACAAGATTAAGGTAAGGGCGGAGGGGGAGACGTTCAGCCTGGCTA
AGCATCCGCAGGGGACGGAGGTAAAAGCAATTACTTATTCGGCAATGCAG
ATCCACGAGATGGAGCATAGAACAGATCTGTACGTCATAATCGACATTTG
AAAGAAAGTAAAAAGAAACGCCAAG
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Coding sequence (CDS) from alignment at scaffold_6:799607..800881+

>mRNA_3625 ID=mRNA_3625|Name=jgi.p|Nanoce1779_2|582814|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_6:799607..800881+ (Nannochloropsis oceanica)
ATGACAGACGAATGGGAACCTCTACCCAAGCGGCGCAAACAGAAGAGCTA
TCGACAGTACCCTGTCATTGCCGAGAATGCGCCACAGCCACCCGAACAGC
AGCAGCAACAACAGGAGCCCCAACAGCCCAATCACCTGGAGGAGGAGGCA
TCGGCCGAGACACCACAGCTGACCCGTCGCGCCGCACCCGACAAGTCGCA
GATGCAGAGAGTGACGGCCGCTGTAGAGGAGCGGGCAGCACAACACCGCC
CTGATCGGGGAGAAGGCATGGGTAATGACGGCGTTGCTGGTGAGTTTTAC
GAGTACTTGGATCATACGGCGGACGTGCAGCTCCATGCGTGGGGCAAGAA
CCTGAAGGAGGCATTTGAGCATATTGTGCCGTGCATGCTGAATTACATGA
CGGACCTGTCCAAGGTCGAAGTGGACCCCAGGCTCACACAGACGTTTGAG
GTAGAGGGTCATGACTTGTCCTCCTTGCTCTTTGCCTGGTTGGATGAGGT
TTTGTTTCGGTTTAGCTCCGAAGCGTTCGTGTGCAAGTCGGTCACCATCC
TGACTTTCGAACGCCCTGCTGCTGTGATGATAGGTTCGGCCAAAGACACT
CCTGTGGGGATCGCCAAGGTCGAAGGTGGAGAAAGACAAGGGAAGTACAA
GATTAAGGTAAGGGCGGAGGGGGAGACGTTCAGCCTGGCTAAGCATCCGC
AGGGGACGGAGGTAAAAGCAATTACTTATTCGGCAATGCAGATCCACGAG
ATGGAGCATAGAACAGATCTGTACGTCATAATCGACATTTGA
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Synonyms
Publications