jgi.p|Nanoce1779_2|582811, mRNA_3624 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582811
Unique Name	mRNA_3624
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	783
Alignment location	scaffold_6:798362..799701 +

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Properties


Property Name	Value
TranscriptId	582897
Track	FilteredModels2
ProteinId	582811

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:798362..799701 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582811	gene_3624	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582811	mRNA_3624-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3624	CDS_3624	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:798362..799701+
coding sequence from alignment at scaffold_6:798362..799701+

mRNA sequence

>mRNA_3624 ID=mRNA_3624|Name=jgi.p|Nanoce1779_2|582811|organism=Nannochloropsis oceanica|type=mRNA|length=783bp
ACAGCACCCGCCCAATCCTAACCACTCAACGATGGTCTGCATCCGGCAGG
CTAAAGCAGAGGACCTGCTGCAGATTCAGGCCGCCAACCTCTGGTGCTTG
CCCGAGAACTACCAAATGAAGTACTATTTCTACCATATCCTGTCCTGGCC
CCAACTACTGTACGTGGCCGAAGATCACCGTCGGCGCATCGTGGGCTATG
TTCTCGCCAAGATGGAAGAGGATGCCGCCGTGCCGCATGGGCACATTACC
TCGTTGGCCGTGTTACGAACGCATAGGAAGTGCGGCATTGCCACAAAATT
GATGCAAGCGTCGCAACGCTGCATGTTGGAGACCTTCGACGCCCAGTACG
TGTCACTGCACGTGCGCAAGAGCAACCGGGCCGCCATCCACCTCTACACC
CGGACGCTAGGCTACGATGTCAACGATGAGGAGAAGGGCTACTATGCCGA
CGGGGAGGATGCATACGATATGCGCAAATACCTCCAGACTAAGGAAGTTC
CCATTTCATCCGTGCCCGTCTCCTCCAGTCCATCTTCGTCGCCCACGGAC
GCGTCCAATGATGCATCTGCCACAGACGGCACAGCAGCCGGGACTACCAG
TACACCAACGCAACATCAAAGTAAGGGAATGGAGTTCATTGCAGAGGATG
TGACGGAAAAGCTAGGCAAGATGAGCTTGAGAGTAGAAGAGATGACCGGA
GATAAGCAACCCGATGGAAAAGAGAGCTAGCTATGAGAAGGTGAGGGAAG
GAGGGGAGAGAGGGAAGGAGAGAGGGAGAGAGA

protein sequence of jgi.p|Nanoce1779_2|582811

>mRNA_3624-protein ID=mRNA_3624-protein|Name=jgi.p|Nanoce1779_2|582811|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MVCIRQAKAEDLLQIQAANLWCLPENYQMKYYFYHILSWPQLLYVAEDHR
RRIVGYVLAKMEEDAAVPHGHITSLAVLRTHRKCGIATKLMQASQRCMLE
TFDAQYVSLHVRKSNRAAIHLYTRTLGYDVNDEEKGYYADGEDAYDMRKY
LQTKEVPISSVPVSSSPSSSPTDASNDASATDGTAAGTTSTPTQHQSKGM
EFIAEDVTEKLGKMSLRVEEMTGDKQPDGKES*

mRNA from alignment at scaffold_6:798362..799701+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3624 ID=mRNA_3624|Name=jgi.p|Nanoce1779_2|582811|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp|location=Sequence derived from alignment at scaffold_6:798362..799701+ (Nannochloropsis oceanica)
ACAGCACCCGCCCAATCCTAACCACTCAACGATGGTCTGCATCCGGCAGG
CTAAAGCAGAGGACCTGCTGCAGATTCAGGCCGCCAACCTCTGGTGCTTG
CCCGAGAACTACCAAATGAAGTACTATTTCTACCATATCCTGTCCTGGCC
CCAACTACTGTACGTGGCCGAAGATCACCGTCGGCGCATCGTGGGCTATG
TTCTCGCCAAGATGTATGTATGGACGAGAGAGAGGTGATGAGGGAGATGG
GAGACGCTACTCGCCGGCTTACCCAATACACACGCGCTAATGTATGTCGT
TCACTTTCTGTGGACATGACACCTAGGGAAGAGGATGCCGCCGTGCCGCA
TGGGCACATTACCTCGTTGGCCGTGTTACGAACGCATAGGAAGTGCGGCA
TTGCCACAAAATTGATGCAAGCGTCGCGTAAGTCAAGGAAAGAGGGAGAG
AGAGAAAAAGGGAGGGAGACAGTGCAGGCAAGGATGCCTCATTTTTTGAC
ATTCGTGAATCTACATATTCATGTTTTCTCACGTACATATGCGTCTTGTA
ACACAGAACGCTGCATGTTGGAGACCTTCGACGCCCAGTACGTGTCACTG
CACGTGCGCAAGAGCAACCGGGCCGCCATCCACCTCTACACCCGGACGCT
AGGCTACGAGTACGTGATGTTTGGATTATAGGGAGGAAGCGGGTGTGAGG
GAGTGGCGCGGGAGGGAGGAAATAGGGTACATGGTTATTCGTTAGGCAGT
GCGTGAGTTTGTGATGGCTGCGGTGAACGGGCGGATCGAACGGAGCATCT
TGAACGGGGGCAGCATGTCTGCAACTTAGTGTCTGACTTTCCTTGACATG
TGAGTACTCACCATGATTTCCCTACCACTTTACAGTGTCAACGATGAGGA
GAAGGGCTACTATGCCGACGGGGAGGATGCATGTACGTACACTACTAGAT
GGGTTTTGTGGGTTACTCACTCGTTCTTAATTTGACACAAGTTAATTTCC
AATCTCCCTATCACCACGCAGACGATATGCGCAAATACCTCCAGACTAAG
GAAGTTCCCATTTCATCCGTGCCCGTCTCCTCCAGTCCATCTTCGTCGCC
CACGGACGCGTCCAATGATGCATCTGCCACAGACGGCACAGCAGCCGGGA
CTACCAGTACACCAACGCAACATCAAAGTAAGGGAATGGAGTTCATTGCA
GAGGATGTGACGGAAAAGCTAGGCAAGATGAGCTTGAGAGTAGAAGAGAT
GACCGGAGATAAGCAACCCGATGGAAAAGAGAGCTAGCTATGAGAAGGTG
AGGGAAGGAGGGGAGAGAGGGAAGGAGAGAGGGAGAGAGA

Coding sequence (CDS) from alignment at scaffold_6:798362..799701+

>mRNA_3624 ID=mRNA_3624|Name=jgi.p|Nanoce1779_2|582811|organism=Nannochloropsis oceanica|type=CDS|length=3495bp|location=Sequence derived from alignment at scaffold_6:798362..799701+ (Nannochloropsis oceanica)
ATGGTCTGCATCCGGCAGGCTAAAGCAGAGGACCTGCTGCAGATTCAGGC
CGCCAACCTCTGGTGCTTGCCCGAGAACTACCAAATGAAGTACTATTTCT
ACCATATCCTGTCCTGGCCCCAACTACTGTACGTGGCCGAAGATCACCGT
CGGCGCATCGTGGGCTATGTTCTCGCCAAGATGGAAGAGGATGCCGCCGT
GCCGCATGGGCACATTACCTCGTTGGCCGTGTTACGAACGCATAGGAAGT
GCGGCATTGCCACAAAATTGATGCAAGCGTCGCAACGCTGCATGTTGGAG
ACCTTCGACGCCCAGTACGTGTCACTGCACGTGCGCAAGAGCAACCGGGC
CGCCATCCACCTCTACACCCGGACGCTAGGCTACGATGTCAACGATGAGG
AGAAGGGCTACTATGCCGACGGGGAGGATGCATACGATATGCGCAAATAC
CTCCAGACTAAGGAAGTTCCCATTTCATCCGTGCCCGTCTCCTCCAGTCC
ATCTTCGTCGCCCACGGACGCGTCCAATGATGCATCTGCCACAGACGGCA
CAGCAGCCGGGACTACCAGTACACCAACGCAACATCAAAGTAAGGGAATG
GAGTTCATTGCAGAGGATGTGACGGAAAAGCTAGGCAAGATGAGCTTGAG
AGTAGAAGAGATGACCGGAGATAAGCAACCCGATGGAAAAGAGAGCTAGA
TGGTCTGCATCCGGCAGGCTAAAGCAGAGGACCTGCTGCAGATTCAGGCC
GCCAACCTCTGGTGCTTGCCCGAGAACTACCAAATGAAGTACTATTTCTA
CCATATCCTGTCCTGGCCCCAACTACTGTACGTGGCCGAAGATCACCGTC
GGCGCATCGTGGGCTATGTTCTCGCCAAGATGGAAGAGGATGCCGCCGTG
CCGCATGGGCACATTACCTCGTTGGCCGTGTTACGAACGCATAGGAAGTG
CGGCATTGCCACAAAATTGATGCAAGCGTCGCAACGCTGCATGTTGGAGA
CCTTCGACGCCCAGTACGTGTCACTGCACGTGCGCAAGAGCAACCGGGCC
GCCATCCACCTCTACACCCGGACGCTAGGCTACGATGTCAACGATGAGGA
GAAGGGCTACTATGCCGACGGGGAGGATGCATACGATATGCGCAAATACC
TCCAGACTAAGGAAGTTCCCATTTCATCCGTGCCCGTCTCCTCCAGTCCA
TCTTCGTCGCCCACGGACGCGTCCAATGATGCATCTGCCACAGACGGCAC
AGCAGCCGGGACTACCAGTACACCAACGCAACATCAAAGTAAGGGAATGG
AGTTCATTGCAGAGGATGTGACGGAAAAGCTAGGCAAGATGAGCTTGAGA
GTAGAAGAGATGACCGGAGATAAGCAACCCGATGGAAAAGAGAGCTAGAT
GGTCTGCATCCGGCAGGCTAAAGCAGAGGACCTGCTGCAGATTCAGGCCG
CCAACCTCTGGTGCTTGCCCGAGAACTACCAAATGAAGTACTATTTCTAC
CATATCCTGTCCTGGCCCCAACTACTGTACGTGGCCGAAGATCACCGTCG
GCGCATCGTGGGCTATGTTCTCGCCAAGATGGAAGAGGATGCCGCCGTGC
CGCATGGGCACATTACCTCGTTGGCCGTGTTACGAACGCATAGGAAGTGC
GGCATTGCCACAAAATTGATGCAAGCGTCGCAACGCTGCATGTTGGAGAC
CTTCGACGCCCAGTACGTGTCACTGCACGTGCGCAAGAGCAACCGGGCCG
CCATCCACCTCTACACCCGGACGCTAGGCTACGATGTCAACGATGAGGAG
AAGGGCTACTATGCCGACGGGGAGGATGCATACGATATGCGCAAATACCT
CCAGACTAAGGAAGTTCCCATTTCATCCGTGCCCGTCTCCTCCAGTCCAT
CTTCGTCGCCCACGGACGCGTCCAATGATGCATCTGCCACAGACGGCACA
GCAGCCGGGACTACCAGTACACCAACGCAACATCAAAGTAAGGGAATGGA
GTTCATTGCAGAGGATGTGACGGAAAAGCTAGGCAAGATGAGCTTGAGAG
TAGAAGAGATGACCGGAGATAAGCAACCCGATGGAAAAGAGAGCTAGATG
GTCTGCATCCGGCAGGCTAAAGCAGAGGACCTGCTGCAGATTCAGGCCGC
CAACCTCTGGTGCTTGCCCGAGAACTACCAAATGAAGTACTATTTCTACC
ATATCCTGTCCTGGCCCCAACTACTGTACGTGGCCGAAGATCACCGTCGG
CGCATCGTGGGCTATGTTCTCGCCAAGATGGAAGAGGATGCCGCCGTGCC
GCATGGGCACATTACCTCGTTGGCCGTGTTACGAACGCATAGGAAGTGCG
GCATTGCCACAAAATTGATGCAAGCGTCGCAACGCTGCATGTTGGAGACC
TTCGACGCCCAGTACGTGTCACTGCACGTGCGCAAGAGCAACCGGGCCGC
CATCCACCTCTACACCCGGACGCTAGGCTACGATGTCAACGATGAGGAGA
AGGGCTACTATGCCGACGGGGAGGATGCATACGATATGCGCAAATACCTC
CAGACTAAGGAAGTTCCCATTTCATCCGTGCCCGTCTCCTCCAGTCCATC
TTCGTCGCCCACGGACGCGTCCAATGATGCATCTGCCACAGACGGCACAG
CAGCCGGGACTACCAGTACACCAACGCAACATCAAAGTAAGGGAATGGAG
TTCATTGCAGAGGATGTGACGGAAAAGCTAGGCAAGATGAGCTTGAGAGT
AGAAGAGATGACCGGAGATAAGCAACCCGATGGAAAAGAGAGCTAGATGG
TCTGCATCCGGCAGGCTAAAGCAGAGGACCTGCTGCAGATTCAGGCCGCC
AACCTCTGGTGCTTGCCCGAGAACTACCAAATGAAGTACTATTTCTACCA
TATCCTGTCCTGGCCCCAACTACTGTACGTGGCCGAAGATCACCGTCGGC
GCATCGTGGGCTATGTTCTCGCCAAGATGGAAGAGGATGCCGCCGTGCCG
CATGGGCACATTACCTCGTTGGCCGTGTTACGAACGCATAGGAAGTGCGG
CATTGCCACAAAATTGATGCAAGCGTCGCAACGCTGCATGTTGGAGACCT
TCGACGCCCAGTACGTGTCACTGCACGTGCGCAAGAGCAACCGGGCCGCC
ATCCACCTCTACACCCGGACGCTAGGCTACGATGTCAACGATGAGGAGAA
GGGCTACTATGCCGACGGGGAGGATGCATACGATATGCGCAAATACCTCC
AGACTAAGGAAGTTCCCATTTCATCCGTGCCCGTCTCCTCCAGTCCATCT
TCGTCGCCCACGGACGCGTCCAATGATGCATCTGCCACAGACGGCACAGC
AGCCGGGACTACCAGTACACCAACGCAACATCAAAGTAAGGGAATGGAGT
TCATTGCAGAGGATGTGACGGAAAAGCTAGGCAAGATGAGCTTGAGAGTA
GAAGAGATGACCGGAGATAAGCAACCCGATGGAAAAGAGAGCTAG

Synonyms

Publications