jgi.p|Nanoce1779_2|582805, mRNA_3622 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582805
Unique Name	mRNA_3622
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1004
Alignment location	scaffold_6:794123..795642 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582891
Track	FilteredModels2
ProteinId	582805

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:794123..795642 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582805	gene_3622	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582805	mRNA_3622-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3622	CDS_3622	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:794123..795642+
coding sequence from alignment at scaffold_6:794123..795642+

mRNA sequence

>mRNA_3622 ID=mRNA_3622|Name=jgi.p|Nanoce1779_2|582805|organism=Nannochloropsis oceanica|type=mRNA|length=1004bp
ACAGAACACCTCCGTTCAATCATGGCCCCCATCGGAAATAAACCTACGCA
TAAAGGCAAGGCAGTGCTGGCGGGTGGGCTCTCTGGTGCCTTTGAAATTT
GCTGCACCTTCCCGACGGAGTATGTTAAGACGACGCAACAATTATCTTCC
AAGTCCATGTCGGTCAAGCAAGTCATCTCCAATACCATGGCCGAAAGCGG
AGTCCTTGGGTTCTATCGCGGCCTCTCCTCCATGCTGTACTTCGCCGCCC
CGAAGGCCGCTATTCGGTTTAGTGCCTTCGAATTTTTCTCCAGTTGTTTG
ACGGATGCAGACGGAGGGGATAAATTTGGTCTGGGCCAGGCGAAGGGCTT
TTTGGCTGGTTTAGGCGCGGGAACGATGGAGGCGATTTTTGTGACGACAC
CTCAGGAGACGATCAAGATAAAGTTGATTCACGACCAGTTCCGCGGTACC
AACAAGTACAACGGCTTCTTCCATGGAGTGAAGACTATTGTTGCCGACGA
AAAGATCTCTGGCGTTTACCGTGGCCTGCTCCCCACCATAATGAAGGTGT
CCACCGCCCAAGCCACACGCTTCGGCATCTTCACCGTCATCAAAGATTAC
GTCAAGCTCGACACCCCAATCAAAAGCGCTGCTGCCGGTGCCACGGCTGG
TGGTATTTCTGTCCTGGCCTTCCAGGGGATTGACGTTGTCAAGAGTCGGA
TGCAGGGATTGGAAGCGGCCAAGTACACGAGCACGTTGGACTGTGTGGGG
CAGATAATGAAGAACGAGGGCATCGCAGGGTTTTACAAGGGGGTGGGCCC
GAGATTGACTCGAGTGTGCTTGGAAGTGGGGATAACCATGAGCTTGTATG
GGGAGATTGTGAAGTTCTTGGACAGCATCTGGGACACCACGCCGAAGGTA
CCCATGCCGCACTAGAGCTAGGAGGGAGGAAGGGGGGGAGGAAGGAAGGA
AGATGGCGTCCTGCGTGTATTTAGTGATTTTAAAGGGGGGAAGAGGTTTG
TGCG

protein sequence of jgi.p|Nanoce1779_2|582805

>mRNA_3622-protein ID=mRNA_3622-protein|Name=jgi.p|Nanoce1779_2|582805|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MAPIGNKPTHKGKAVLAGGLSGAFEICCTFPTEYVKTTQQLSSKSMSVKQ
VISNTMAESGVLGFYRGLSSMLYFAAPKAAIRFSAFEFFSSCLTDADGGD
KFGLGQAKGFLAGLGAGTMEAIFVTTPQETIKIKLIHDQFRGTNKYNGFF
HGVKTIVADEKISGVYRGLLPTIMKVSTAQATRFGIFTVIKDYVKLDTPI
KSAAAGATAGGISVLAFQGIDVVKSRMQGLEAAKYTSTLDCVGQIMKNEG
IAGFYKGVGPRLTRVCLEVGITMSLYGEIVKFLDSIWDTTPKVPMPH*

mRNA from alignment at scaffold_6:794123..795642+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3622 ID=mRNA_3622|Name=jgi.p|Nanoce1779_2|582805|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp|location=Sequence derived from alignment at scaffold_6:794123..795642+ (Nannochloropsis oceanica)
ACAGAACACCTCCGTTCAATCATGGCCCCCATCGGAAATAAACCTACGCA
TAAAGGCAAGGCAGTGCTGGCGGGTGGGCTCTCTGGTGCCTTTGAAATTT
GCTGGTACGTGTAGAGAGACCACTAGTGGGATGGGTAGGGTGTGTGTGCC
CACCGTTGCGGCAAGGCCTTCTTTCTCTAATGATGCTCCTTCCCCTCTTT
ACCAACAAAGCACCTTCCCGACGGAGTATGTTAAGACGACGCAACAATTA
TCTTCCAAGTCCATGTCGGTCAAGCAAGTCATCTCCAATACCATGGCCGA
AAGCGGAGTCCTTGGGTTCTATCGCGGCCTCTCCTCCATGCTGTACTTCG
CCGCCCCGAAGGCCGCTATTCGGTTTAGTGCCTTCGAATTTTTCTCCAGT
TGTTTGACGGATGCAGACGGAGGGGATAAATTTGGTCTGGGCCAGGCGAA
GGGCTTTTTGGCTGGTTTAGGCGCGGGAACGATGGAGGCGATTTTTGTGA
CGACACCTCAGGAGACGATCAAGATAAAGTTGATTCACGACCAGGTTAGT
CATTGTCCTACTCTGTTCTAGATATGAGAGGAAAGTGTGATCAGTGTGAA
TATGTATATTCTGCACACTATGCTGAAAGTCACCTCGTCATAATTTTGCA
GCTCTTCTTCCTGCTGACTTTGACTTTGCCAATGTATACTTTTTCACGTT
TCTACCTCACCCTCTCTCTCGCTACCTCTGTAGTTCCGCGGTACCAACAA
GTACAACGGCTTCTTCCATGGAGTGAAGACTATTGTTGCCGACGAAAAGA
TCTCTGGCGTTTACCGTGGCCTGCTCCCCACCATAATGAAGGTAAATAAG
GATAAAAAGTGGGGGGGGGGGGGGGGGGGGGAAGAAGGGAGGGAAGATAG
GGGGTTGTGTCTACTCATACGTGTCCATAGACTTGGCTCCTACTATCTAT
CTTGGTCTGCAGTAGATATGAGTGGACTTGTCGACTCTTTGTCTCATCGT
CAATTTCCCTTCTCATCACGGATCCCTTCTTGCCTCCCCGCCTCCCTCCC
CTTCCTTGTAAGGTGTCCACCGCCCAAGCCACACGCTTCGGCATCTTCAC
CGTCATCAAAGATTACGTCAAGCTCGACACCCCAATCAAAAGCGCTGCTG
CCGGTGCCACGGCTGGTGGTATTTCTGTCCTGGCCTTCCAGGGGATTGAC
GTTGTCAAGAGTCGGATGCAGGGATTGGAAGCGGCCAAGTACACGAGCAC
GTTGGACTGTGTGGGGCAGATAATGAAGAACGAGGGCATCGCAGGGTTTT
ACAAGGGGGTGGGCCCGAGATTGACTCGAGTGTGCTTGGAAGTGGGGATA
ACCATGAGCTTGTATGGGGAGATTGTGAAGTTCTTGGACAGCATCTGGGA
CACCACGCCGAAGGTACCCATGCCGCACTAGAGCTAGGAGGGAGGAAGGG
GGGGAGGAAGGAAGGAAGATGGCGTCCTGCGTGTATTTAGTGATTTTAAA
GGGGGGAAGAGGTTTGTGCG

Coding sequence (CDS) from alignment at scaffold_6:794123..795642+

>mRNA_3622 ID=mRNA_3622|Name=jgi.p|Nanoce1779_2|582805|organism=Nannochloropsis oceanica|type=CDS|length=3576bp|location=Sequence derived from alignment at scaffold_6:794123..795642+ (Nannochloropsis oceanica)
ATGGCCCCCATCGGAAATAAACCTACGCATAAAGGCAAGGCAGTGCTGGC
GGGTGGGCTCTCTGGTGCCTTTGAAATTTGCTGCACCTTCCCGACGGAGT
ATGTTAAGACGACGCAACAATTATCTTCCAAGTCCATGTCGGTCAAGCAA
GTCATCTCCAATACCATGGCCGAAAGCGGAGTCCTTGGGTTCTATCGCGG
CCTCTCCTCCATGCTGTACTTCGCCGCCCCGAAGGCCGCTATTCGGTTTA
GTGCCTTCGAATTTTTCTCCAGTTGTTTGACGGATGCAGACGGAGGGGAT
AAATTTGGTCTGGGCCAGGCGAAGGGCTTTTTGGCTGGTTTAGGCGCGGG
AACGATGGAGGCGATTTTTGTGACGACACCTCAGGAGACGATCAAGATAA
AGTTGATTCACGACCAGTTCCGCGGTACCAACAAGTACAACGGCTTCTTC
CATGGAGTGAAGACTATTGTTGCCGACGAAAAGATCTCTGGCGTTTACCG
TGGCCTGCTCCCCACCATAATGAAGGTGTCCACCGCCCAAGCCACACGCT
TCGGCATCTTCACCGTCATCAAAGATTACGTCAAGCTCGACACCCCAATC
AAAAGCGCTGCTGCCGGTGCCACGGCTGGTGGTATTTCTGTCCTGGCCTT
CCAGGGGATTGACGTTGTCAAGAGTCGGATGCAGGGATTGGAAGCGGCCA
AGTACACGAGCACGTTGGACTGTGTGGGGCAGATAATGAAGAACGAGGGC
ATCGCAGGGTTTTACAAGGGGGTGGGCCCGAGATTGACTCGAGTGTGCTT
GGAAGTGGGGATAACCATGAGCTTGTATGGGGAGATTGTGAAGTTCTTGG
ACAGCATCTGGGACACCACGCCGAAGGTACCCATGCCGCACTAGATGGCC
CCCATCGGAAATAAACCTACGCATAAAGGCAAGGCAGTGCTGGCGGGTGG
GCTCTCTGGTGCCTTTGAAATTTGCTGCACCTTCCCGACGGAGTATGTTA
AGACGACGCAACAATTATCTTCCAAGTCCATGTCGGTCAAGCAAGTCATC
TCCAATACCATGGCCGAAAGCGGAGTCCTTGGGTTCTATCGCGGCCTCTC
CTCCATGCTGTACTTCGCCGCCCCGAAGGCCGCTATTCGGTTTAGTGCCT
TCGAATTTTTCTCCAGTTGTTTGACGGATGCAGACGGAGGGGATAAATTT
GGTCTGGGCCAGGCGAAGGGCTTTTTGGCTGGTTTAGGCGCGGGAACGAT
GGAGGCGATTTTTGTGACGACACCTCAGGAGACGATCAAGATAAAGTTGA
TTCACGACCAGTTCCGCGGTACCAACAAGTACAACGGCTTCTTCCATGGA
GTGAAGACTATTGTTGCCGACGAAAAGATCTCTGGCGTTTACCGTGGCCT
GCTCCCCACCATAATGAAGGTGTCCACCGCCCAAGCCACACGCTTCGGCA
TCTTCACCGTCATCAAAGATTACGTCAAGCTCGACACCCCAATCAAAAGC
GCTGCTGCCGGTGCCACGGCTGGTGGTATTTCTGTCCTGGCCTTCCAGGG
GATTGACGTTGTCAAGAGTCGGATGCAGGGATTGGAAGCGGCCAAGTACA
CGAGCACGTTGGACTGTGTGGGGCAGATAATGAAGAACGAGGGCATCGCA
GGGTTTTACAAGGGGGTGGGCCCGAGATTGACTCGAGTGTGCTTGGAAGT
GGGGATAACCATGAGCTTGTATGGGGAGATTGTGAAGTTCTTGGACAGCA
TCTGGGACACCACGCCGAAGGTACCCATGCCGCACTAGATGGCCCCCATC
GGAAATAAACCTACGCATAAAGGCAAGGCAGTGCTGGCGGGTGGGCTCTC
TGGTGCCTTTGAAATTTGCTGCACCTTCCCGACGGAGTATGTTAAGACGA
CGCAACAATTATCTTCCAAGTCCATGTCGGTCAAGCAAGTCATCTCCAAT
ACCATGGCCGAAAGCGGAGTCCTTGGGTTCTATCGCGGCCTCTCCTCCAT
GCTGTACTTCGCCGCCCCGAAGGCCGCTATTCGGTTTAGTGCCTTCGAAT
TTTTCTCCAGTTGTTTGACGGATGCAGACGGAGGGGATAAATTTGGTCTG
GGCCAGGCGAAGGGCTTTTTGGCTGGTTTAGGCGCGGGAACGATGGAGGC
GATTTTTGTGACGACACCTCAGGAGACGATCAAGATAAAGTTGATTCACG
ACCAGTTCCGCGGTACCAACAAGTACAACGGCTTCTTCCATGGAGTGAAG
ACTATTGTTGCCGACGAAAAGATCTCTGGCGTTTACCGTGGCCTGCTCCC
CACCATAATGAAGGTGTCCACCGCCCAAGCCACACGCTTCGGCATCTTCA
CCGTCATCAAAGATTACGTCAAGCTCGACACCCCAATCAAAAGCGCTGCT
GCCGGTGCCACGGCTGGTGGTATTTCTGTCCTGGCCTTCCAGGGGATTGA
CGTTGTCAAGAGTCGGATGCAGGGATTGGAAGCGGCCAAGTACACGAGCA
CGTTGGACTGTGTGGGGCAGATAATGAAGAACGAGGGCATCGCAGGGTTT
TACAAGGGGGTGGGCCCGAGATTGACTCGAGTGTGCTTGGAAGTGGGGAT
AACCATGAGCTTGTATGGGGAGATTGTGAAGTTCTTGGACAGCATCTGGG
ACACCACGCCGAAGGTACCCATGCCGCACTAGATGGCCCCCATCGGAAAT
AAACCTACGCATAAAGGCAAGGCAGTGCTGGCGGGTGGGCTCTCTGGTGC
CTTTGAAATTTGCTGCACCTTCCCGACGGAGTATGTTAAGACGACGCAAC
AATTATCTTCCAAGTCCATGTCGGTCAAGCAAGTCATCTCCAATACCATG
GCCGAAAGCGGAGTCCTTGGGTTCTATCGCGGCCTCTCCTCCATGCTGTA
CTTCGCCGCCCCGAAGGCCGCTATTCGGTTTAGTGCCTTCGAATTTTTCT
CCAGTTGTTTGACGGATGCAGACGGAGGGGATAAATTTGGTCTGGGCCAG
GCGAAGGGCTTTTTGGCTGGTTTAGGCGCGGGAACGATGGAGGCGATTTT
TGTGACGACACCTCAGGAGACGATCAAGATAAAGTTGATTCACGACCAGT
TCCGCGGTACCAACAAGTACAACGGCTTCTTCCATGGAGTGAAGACTATT
GTTGCCGACGAAAAGATCTCTGGCGTTTACCGTGGCCTGCTCCCCACCAT
AATGAAGGTGTCCACCGCCCAAGCCACACGCTTCGGCATCTTCACCGTCA
TCAAAGATTACGTCAAGCTCGACACCCCAATCAAAAGCGCTGCTGCCGGT
GCCACGGCTGGTGGTATTTCTGTCCTGGCCTTCCAGGGGATTGACGTTGT
CAAGAGTCGGATGCAGGGATTGGAAGCGGCCAAGTACACGAGCACGTTGG
ACTGTGTGGGGCAGATAATGAAGAACGAGGGCATCGCAGGGTTTTACAAG
GGGGTGGGCCCGAGATTGACTCGAGTGTGCTTGGAAGTGGGGATAACCAT
GAGCTTGTATGGGGAGATTGTGAAGTTCTTGGACAGCATCTGGGACACCA
CGCCGAAGGTACCCATGCCGCACTAG

Synonyms

Publications