jgi.p|Nanoce1779_2|582803, mRNA_3621 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582803
Unique NamemRNA_3621
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length917
Alignment locationscaffold_6:792417..793459 +

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Properties
Property NameValue
TranscriptId582889
TrackFilteredModels2
ProteinId582803
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:792417..793459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582803gene_3621Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582803mRNA_3621-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3621CDS_3621Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3621 ID=mRNA_3621|Name=jgi.p|Nanoce1779_2|582803|organism=Nannochloropsis oceanica|type=mRNA|length=917bp
CAGACAGGAGCGATGGTAGTGGCCTCGCTCGACCGCAACATTTGGATCTG
CGCTTCAGACGGAGATCTGGCCGGCGTCCAAGAATTCCTAGAGGAAGGTG
GCATGGATGTGAATGCGGCGGATGAATTTGGATACACGTGCTTGCATGCC
GCGGCGTCGTACGGGCATGTGGGCTTGGTTCAGTTCCTTATTGGGCGAGG
TGGGAACGTTGCCTTGCGTGACCCGGACGGGGACACGCCCTTGCATGTGT
GCGAGGAAGTAGACGTGGCCCAGGTTCTGGTTGAAAATGGTGCAGATCCA
CAATCTCAGAACATGGAGGGGAAGCGGCCACATGACATTGCGTTGGAAGA
TGGGCATTTGCCGTTGGGAAATTACTTGCGGGGGTTGTGTGGCTTGCCGC
CCTTGACGGCAGCCCAGGCGCAGGCAGCCATGGCGGCGCTGGAGTCGCAG
GATAATGGAGAGCAAGGGGAGGATCAGGAGGTGCATCAGATGGGATTACA
AGATCTGCAGGCTTTTGTGGAAGGGCAGGAAGAGGAGCAGGAGGAGGATG
ATGTGGAGAGGGGGAAGGAGAGTGGGATGGAGGAGAATAAAATGGCAGAG
TGAGAGGGAAGGACTCGAGAAATAAATAGCGGGAGAGAGAGAGAGGGGGG
GGGGGGGGATAGAGAGAGAGAGAGACTATATGATCTTGGGGTTCAAAAAT
AAGGAAAAGTGTTTAATGGTACGCTCGTGATAGAAAGCACGTGATAGACT
GACTAAGGTATCGATGAGAGATTTAGCCCCGAAGGGAGCGGATCAGTCAA
ACCTGAGTGCCTCAGAGATCACAGATTAAAGAAGCGGAATGCTTTTACCG
AGGAAAAAGGCGAAAAAGCTGCACAGTTGATGAGAAGAAAGCAATAGAAA
GTACTCCTTTCGCTCAA
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protein sequence of jgi.p|Nanoce1779_2|582803

>mRNA_3621-protein ID=mRNA_3621-protein|Name=jgi.p|Nanoce1779_2|582803|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MVVASLDRNIWICASDGDLAGVQEFLEEGGMDVNAADEFGYTCLHAAASY
GHVGLVQFLIGRGGNVALRDPDGDTPLHVCEEVDVAQVLVENGADPQSQN
MEGKRPHDIALEDGHLPLGNYLRGLCGLPPLTAAQAQAAMAALESQDNGE
QGEDQEVHQMGLQDLQAFVEGQEEEQEEDDVERGKESGMEENKMAE*
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mRNA from alignment at scaffold_6:792417..793459+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3621 ID=mRNA_3621|Name=jgi.p|Nanoce1779_2|582803|organism=Nannochloropsis oceanica|type=mRNA|length=1043bp|location=Sequence derived from alignment at scaffold_6:792417..793459+ (Nannochloropsis oceanica)
CAGACAGGAGCGATGGTAGTGGCCTCGCTCGACCGCAACATTTGGATCTG
CGCTTCTGGTAAGTTGAATTGTAATTATTATCTTGTCATGGTCTCATCCA
CCACCAGTCCCTCGTCCCACCACCTCCTAGACCTCCCCACTCACCCCGCC
CTCCCTAAACGCCAATCCTCCCAAATCCCACCAGACGGAGATCTGGCCGG
CGTCCAAGAATTCCTAGAGGAAGGTGGCATGGATGTGAATGCGGCGGATG
AATTTGGATACACGTGCTTGCATGCCGCGGCGTCGTACGGGCATGTGGGC
TTGGTTCAGTTCCTTATTGGGCGAGGTGGGAACGTTGCCTTGCGTGACCC
GGACGGGGACACGCCCTTGCATGTGTGCGAGGAAGTAGACGTGGCCCAGG
TTCTGGTTGAAAATGGTGCAGATCCACAATCTCAGAACATGGAGGGGAAG
CGGCCACATGACATTGCGTTGGAAGATGGGCATTTGCCGTTGGGAAATTA
CTTGCGGGGGTTGTGTGGCTTGCCGCCCTTGACGGCAGCCCAGGCGCAGG
CAGCCATGGCGGCGCTGGAGTCGCAGGATAATGGAGAGCAAGGGGAGGAT
CAGGAGGTGCATCAGATGGGATTACAAGATCTGCAGGCTTTTGTGGAAGG
GCAGGAAGAGGAGCAGGAGGAGGATGATGTGGAGAGGGGGAAGGAGAGTG
GGATGGAGGAGAATAAAATGGCAGAGTGAGAGGGAAGGACTCGAGAAATA
AATAGCGGGAGAGAGAGAGAGGGGGGGGGGGGGGATAGAGAGAGAGAGAG
ACTATATGATCTTGGGGTTCAAAAATAAGGAAAAGTGTTTAATGGTACGC
TCGTGATAGAAAGCACGTGATAGACTGACTAAGGTATCGATGAGAGATTT
AGCCCCGAAGGGAGCGGATCAGTCAAACCTGAGTGCCTCAGAGATCACAG
ATTAAAGAAGCGGAATGCTTTTACCGAGGAAAAAGGCGAAAAAGCTGCAC
AGTTGATGAGAAGAAAGCAATAGAAAGTACTCCTTTCGCTCAA
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Coding sequence (CDS) from alignment at scaffold_6:792417..793459+

>mRNA_3621 ID=mRNA_3621|Name=jgi.p|Nanoce1779_2|582803|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at scaffold_6:792417..793459+ (Nannochloropsis oceanica)
ATGGTAGTGGCCTCGCTCGACCGCAACATTTGGATCTGCGCTTCAGACGG
AGATCTGGCCGGCGTCCAAGAATTCCTAGAGGAAGGTGGCATGGATGTGA
ATGCGGCGGATGAATTTGGATACACGTGCTTGCATGCCGCGGCGTCGTAC
GGGCATGTGGGCTTGGTTCAGTTCCTTATTGGGCGAGGTGGGAACGTTGC
CTTGCGTGACCCGGACGGGGACACGCCCTTGCATGTGTGCGAGGAAGTAG
ACGTGGCCCAGGTTCTGGTTGAAAATGGTGCAGATCCACAATCTCAGAAC
ATGGAGGGGAAGCGGCCACATGACATTGCGTTGGAAGATGGGCATTTGCC
GTTGGGAAATTACTTGCGGGGGTTGTGTGGCTTGCCGCCCTTGACGGCAG
CCCAGGCGCAGGCAGCCATGGCGGCGCTGGAGTCGCAGGATAATGGAGAG
CAAGGGGAGGATCAGGAGGTGCATCAGATGGGATTACAAGATCTGCAGGC
TTTTGTGGAAGGGCAGGAAGAGGAGCAGGAGGAGGATGATGTGGAGAGGG
GGAAGGAGAGTGGGATGGAGGAGAATAAAATGGCAGAGTGAATGGTAGTG
GCCTCGCTCGACCGCAACATTTGGATCTGCGCTTCAGACGGAGATCTGGC
CGGCGTCCAAGAATTCCTAGAGGAAGGTGGCATGGATGTGAATGCGGCGG
ATGAATTTGGATACACGTGCTTGCATGCCGCGGCGTCGTACGGGCATGTG
GGCTTGGTTCAGTTCCTTATTGGGCGAGGTGGGAACGTTGCCTTGCGTGA
CCCGGACGGGGACACGCCCTTGCATGTGTGCGAGGAAGTAGACGTGGCCC
AGGTTCTGGTTGAAAATGGTGCAGATCCACAATCTCAGAACATGGAGGGG
AAGCGGCCACATGACATTGCGTTGGAAGATGGGCATTTGCCGTTGGGAAA
TTACTTGCGGGGGTTGTGTGGCTTGCCGCCCTTGACGGCAGCCCAGGCGC
AGGCAGCCATGGCGGCGCTGGAGTCGCAGGATAATGGAGAGCAAGGGGAG
GATCAGGAGGTGCATCAGATGGGATTACAAGATCTGCAGGCTTTTGTGGA
AGGGCAGGAAGAGGAGCAGGAGGAGGATGATGTGGAGAGGGGGAAGGAGA
GTGGGATGGAGGAGAATAAAATGGCAGAGTGA
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Synonyms
Publications