jgi.p|Nanoce1779_2|553057, mRNA_3620 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553057
Unique Name	mRNA_3620
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1823
Alignment location	scaffold_6:790200..792304 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	553143
Track	FilteredModels2
ProteinId	553057

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:790200..792304 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553057	gene_3620	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553057	mRNA_3620-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3620	CDS_3620	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:790200..792304-
coding sequence from alignment at scaffold_6:790200..792304-

mRNA sequence

>mRNA_3620 ID=mRNA_3620|Name=jgi.p|Nanoce1779_2|553057|organism=Nannochloropsis oceanica|type=mRNA|length=1823bp
TATAGCACATTCGATGTACTCTGAGGGTGGCCTCAAGGATGCTGCACGTA
TAGCATGGATTAAGAGTTTCAGATAGTCTCACTCGCCAACACACTCTAGA
TGAAGAATTCATCACGTGTTTATGCTCCGGCCTTCCACTAGTACAGGGTC
ACTTAAATCAACAAGTACACAAGCTGCAGCATCGACGACTGCTCCTTTCA
CATCCAGCGCCCACAGTACCCTTGGCGTACACCACCCCCTCCCACTATGG
CCGCCCAAGACGACGGCAGCCGTCTCCGGTCCTTCCTGGCTGTCATCGGG
GACGGCATTGACCCCCAAGTTGCCCAACGCTTCCTTGATGCGACAAATAA
TGACGTGGAACAGGCCATCGAACTCTATCTAGAGAGCGGGGATGGTGGAG
GCGGTGCTCCCCTGTCTTCTACTAGCGGTGATACTTCTATTGCGGATGCT
GCTCCTGACGCCGCTGCAATCTCTGCGGCCGCTCAAGGAAAGGGAGATAG
CAGGTATCGCGACGAGGAGGAATATGAGGTGGATGAGGATGGCAACCCTG
TGCGGAAGGCGGATCAAGTCAAAAAGCAGCGGCTTCTAGCTGTCAGCCCT
TTGATGGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGGCGGGGG
AGGAGTGGGCTATCTCCCTGTCAACCCTTTTCGGCATTTTGGTGCGGAGG
CAAGAGGCGCTTTCGGTCGGGGTGGGAATCCATGGGATGTAGCGGGTGGA
GGTGAGGGCATAAGCAAGCTGTTTCAACCTCCATTGCAATTGTTGTTTCA
TGGTAGTTTTGCCGATGCCCGGGCCACGGCCAAGGAGAAAAAGAAATGGT
TGTTGGTGAACATTCAGAGAGAGGATATATTTGAGTCGCATATGCTCAAC
CGGGATGTGTGGGCGGACGAGCTGGTTCATGCCATGATTCTAGAAGGTTT
CATTTTTTGGCAAATGAGTGCAGGGCTTCCGGAGGCTATGTCCTACCTTG
CTCGGTATCATCTCGAGGACGACGGCAGCAGCCGCAACAACAACAACAAC
AACAATCAAAGCGCGGGCCATCTACCTCATATAGGTGTGCTCGATCCTCG
GACCCAACGGCTGATGTGGTGGCATACTGGTGCCCTCCCTCCCCACCAGC
TTGCAGATAAATTGACCGAAATTACGTCAACCTACTCCTTGGACGACCAC
ACGTCCGTGCTTCCTCCACCCCGTCCTCCCCCAGCACGTCATTCTACCCA
GAGTGAGTATGATCGGTCGGAGGACGAACAGCTTGCATTGGCGTTGGCGG
CATCTATGAAGGATGCGGAGCCCTCGGAGGGAGGAGGAGGAAAGGAGGGA
GGGAGGGCAGGAGGACGAAATCATGAGATTGTCGAGTTGGATGATAAGCC
GGCGGTGGGAGGAGAAGGTGTGACACGGGTGAGGTTTCGTTTACCACAAG
GGAAAACTCTCACCCGCCGTTTCCTCGTCGATAATCCCGTGGCTGCTCTG
TATAAATATGCACACGAGGAGCTTGTGAAAGAGAATGGGGAGATGGAAGG
CATGGAAAGGAGGAAGGGAGGGCTTAGGAAATTTGACTTAGTCACGATGT
ATCCGCCCAAGTTGTCCTTGGAGAAGGAGATGGGGGATGGGAAGACTTTG
GGAGAGGCGAAGCTGCAAAATTCGTCATTGGTGATGGTGTTGTTGCCTTG
AGGGATGGAGGGACGTTTGGAGGGAGGTAGTATAAGAGTGTGAAGGTAGG
AGTGTGCAGGTAGGTACATATCAGTAGAAGTGGAGGAGAAAGAAAGAAAC
GCTCTACGAGCAAGCATGAGGGC

protein sequence of jgi.p|Nanoce1779_2|553057

>mRNA_3620-protein ID=mRNA_3620-protein|Name=jgi.p|Nanoce1779_2|553057|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MAAQDDGSRLRSFLAVIGDGIDPQVAQRFLDATNNDVEQAIELYLESGDG
GGGAPLSSTSGDTSIADAAPDAAAISAAAQGKGDSRYRDEEEYEVDEDGN
PVRKADQVKKQRLLAVSPLMGGGGGGGGGGGGGGGGVGYLPVNPFRHFGA
EARGAFGRGGNPWDVAGGGEGISKLFQPPLQLLFHGSFADARATAKEKKK
WLLVNIQREDIFESHMLNRDVWADELVHAMILEGFIFWQMSAGLPEAMSY
LARYHLEDDGSSRNNNNNNNQSAGHLPHIGVLDPRTQRLMWWHTGALPPH
QLADKLTEITSTYSLDDHTSVLPPPRPPPARHSTQSEYDRSEDEQLALAL
AASMKDAEPSEGGGGKEGGRAGGRNHEIVELDDKPAVGGEGVTRVRFRLP
QGKTLTRRFLVDNPVAALYKYAHEELVKENGEMEGMERRKGGLRKFDLVT
MYPPKLSLEKEMGDGKTLGEAKLQNSSLVMVLLP*

mRNA from alignment at scaffold_6:790200..792304-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3620 ID=mRNA_3620|Name=jgi.p|Nanoce1779_2|553057|organism=Nannochloropsis oceanica|type=mRNA|length=2105bp|location=Sequence derived from alignment at scaffold_6:790200..792304- (Nannochloropsis oceanica)
TATAGCACATTCGATGTACTCTGAGGGTGGCCTCAAGGATGCTGCACGTA
TAGCATGGATTAAGAGTTTCAGATAGTCTCACTCGCCAACACACTCTAGA
TGAAGAATTCATCACGTGTTTATGCTCCGGCCTTCCACTAGTACAGGGTC
ACTTAAATCAACAAGTACACAAGCTGCAGCATCGACGACTGCTCCTTTCA
CATCCAGCGCCCACAGTACCCTTGGCGTACACCACCCCCTCCCACTATGG
CCGCCCAAGACGACGGCAGCCGTCTCCGGTCCTTCCTGGCTGTCATCGGG
GACGGCATTGACCCCCAAGTTGCCCAACGCTTCCTTGATGCGACAAATAA
TGACGTGGAACAGGCCATCGAACTCTATCTAGAGAGCGGGGATGGTGGAG
GCGGTGCTCCCCTGTCTTCTACTAGCGGTGATACTTCTATTGCGGATGCT
GCTCCTGACGCCGCTGCAATCTCTGCGGCCGCTCAAGGAAAGGGAGATAG
CAGGTATCGCGACGAGGAGGAATATGAGGTGGATGAGGATGGCAACCCTG
TGCGGAAGGCGGATCAAGTCAAAAAGCAGCGGCTTCTAGCTGTCAGCCCT
TTGATGGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTGGAGGCGGGGG
AGGAGTGGGCTATCTCCCTGTCAACCCTTTTCGGCATTTTGGTGCGGAGG
CAAGAGGCGCTTTCGGTCGGGGTGGGAATCCATGGGATGTAGCGGGTGGA
GGTGAGGGCATAAGCAAGCTGTTTCAACCTCCATTGCAATTGTTGTTTCA
TGGTAGTTTTGCCGATGCCCGGGCCACGGCCAAGGAGAAAAAGAAATGGT
TGTTGGTGAACATTCAGAGAGAGGATATATTTGAGTCGCATATGCTCAAC
CGGGATGTGTGGGCGGACGAGCTGGTTCATGCCATGATTCTAGAAGGTTT
CATTTTTTGGCAAATGAGTGCAGGGCTTCCGGAGGCTATGTCCTACCTTG
CTCGGTATCATCTCGAGGACGACGGCAGCAGCCGCAACAACAACAACAAC
AACAATCAAAGCGCGGGCCATCTACCTCATATAGGTGTGCTCGATCCTCG
GACCCAACGGCTGATGTGGTGGCATACTGGTGCCCTCCCTCCCCACCAGC
TTGCAGATAAATTGACCGAAATTACGTCAACCTACTCCTTGGACGACCAC
ACGTCCGTGCTTCCTCCACCCCGTCCTCCCCCAGCACGTCATTCTACCCA
GAGTGAGTATGATCGGTCGGAGGACGAACAGCTTGCATTGGCGTTGGCGG
CATCTATGAAGGATGCGGAGCCCTCGGAGGGAGGAGGAGGAAAGGAGGGA
GGGAGGGCAGGAGGACGAAATCATGAGATTGTCGAGTTGGATGATAGTGA
TGAGGACGAGAACGAGGGCGAGGATGACGGTGAGGATGATGACAAGGTGC
TCTTCTCACCGCCCGTGGAGAAGATGGGAGAAGGTGGGAATGAGGGAGGA
ATGGAAGGCAAGGCTCCCCCTGTATATGATGTTCTGGACGACGACGAGGA
CGATTTTGTGGACACGACATCAACAACAGTAACACCAACAACAGGAACAA
CAGCAGCGACAGCAACGACTGCATCAGTACCTTCCTTCCTCCCTTTTTCT
CCTTACCTGTCCTATGGTCTCGAGCCAGAGCCGGCGGTGGGAGGAGAAGG
TGTGACACGGGTGAGGTTTCGTTTACCACAAGGGAAAACTCTCACCCGCC
GTTTCCTCGTCGATAATCCCGTGGCTGCTCTGTATAAATATGCACACGAG
GAGCTTGTGAAAGAGAATGGGGAGATGGAAGGCATGGAAAGGAGGAAGGG
AGGGCTTAGGAAATTTGACTTAGTCACGATGTATCCGCCCAAGTTGTCCT
TGGAGAAGGAGATGGGGGATGGGAAGACTTTGGGAGAGGCGAAGCTGCAA
AATTCGTCATTGGTGATGGTGTTGTTGCCTTGAGGGATGGAGGGACGTTT
GGAGGGAGGTAGTATAAGAGTGTGAAGGTAGGAGTGTGCAGGTAGGTACA
TATCAGTAGAAGTGGAGGAGAAAGAAAGAAACGCTCTACGAGCAAGCATG
AGGGC

Coding sequence (CDS) from alignment at scaffold_6:790200..792304-

>mRNA_3620 ID=mRNA_3620|Name=jgi.p|Nanoce1779_2|553057|organism=Nannochloropsis oceanica|type=CDS|length=2910bp|location=Sequence derived from alignment at scaffold_6:790200..792304- (Nannochloropsis oceanica)
AGCCGGCGGTGGGAGGAGAAGGTGTGACACGGGTGAGGTTTCGTTTACCA
CAAGGGAAAACTCTCACCCGCCGTTTCCTCGTCGATAATCCCGTGGCTGC
TCTGTATAAATATGCACACGAGGAGCTTGTGAAAGAGAATGGGGAGATGG
AAGGCATGGAAAGGAGGAAGGGAGGGCTTAGGAAATTTGACTTAGTCACG
ATGTATCCGCCCAAGTTGTCCTTGGAGAAGGAGATGGGGGATGGGAAGAC
TTTGGGAGAGGCGAAGCTGCAAAATTCGTCATTGGTGATGGTGTTGTTGC
CTTGAATGGCCGCCCAAGACGACGGCAGCCGTCTCCGGTCCTTCCTGGCT
GTCATCGGGGACGGCATTGACCCCCAAGTTGCCCAACGCTTCCTTGATGC
GACAAATAATGACGTGGAACAGGCCATCGAACTCTATCTAGAGAGCGGGG
ATGGTGGAGGCGGTGCTCCCCTGTCTTCTACTAGCGGTGATACTTCTATT
GCGGATGCTGCTCCTGACGCCGCTGCAATCTCTGCGGCCGCTCAAGGAAA
GGGAGATAGCAGGTATCGCGACGAGGAGGAATATGAGGTGGATGAGGATG
GCAACCCTGTGCGGAAGGCGGATCAAGTCAAAAAGCAGCGGCTTCTAGCT
GTCAGCCCTTTGATGGGAGGAGGAGGAGGAGGAGGTGGAGGAGGAGGTGG
AGGCGGGGGAGGAGTGGGCTATCTCCCTGTCAACCCTTTTCGGCATTTTG
GTGCGGAGGCAAGAGGCGCTTTCGGTCGGGGTGGGAATCCATGGGATGTA
GCGGGTGGAGGTGAGGGCATAAGCAAGCTGTTTCAACCTCCATTGCAATT
GTTGTTTCATGGTAGTTTTGCCGATGCCCGGGCCACGGCCAAGGAGAAAA
AGAAATGGTTGTTGGTGAACATTCAGAGAGAGGATATATTTGAGTCGCAT
ATGCTCAACCGGGATGTGTGGGCGGACGAGCTGGTTCATGCCATGATTCT
AGAAGGTTTCATTTTTTGGCAAATGAGTGCAGGGCTTCCGGAGGCTATGT
CCTACCTTGCTCGGTATCATCTCGAGGACGACGGCAGCAGCCGCAACAAC
AACAACAACAACAATCAAAGCGCGGGCCATCTACCTCATATAGGTGTGCT
CGATCCTCGGACCCAACGGCTGATGTGGTGGCATACTGGTGCCCTCCCTC
CCCACCAGCTTGCAGATAAATTGACCGAAATTACGTCAACCTACTCCTTG
GACGACCACACGTCCGTGCTTCCTCCACCCCGTCCTCCCCCAGCACGTCA
TTCTACCCAGAGTGAGTATGATCGGTCGGAGGACGAACAGCTTGCATTGG
CGTTGGCGGCATCTATGAAGGATGCGGAGCCCTCGGAGGGAGGAGGAGGA
AAGGAGGGAGGGAGGGCAGGAGGACGAAATCATGAGATTGTCGAGTTGGA
TGATAAGCCGGCGGTGGGAGGAGAAGGTGTGACACGGGTGAGGTTTCGTT
TACCACAAGGGAAAACTCTCACCCGCCGTTTCCTCGTCGATAATCCCGTG
GCTGCTCTGTATAAATATGCACACGAGGAGCTTGTGAAAGAGAATGGGGA
GATGGAAGGCATGGAAAGGAGGAAGGGAGGGCTTAGGAAATTTGACTTAG
TCACGATGTATCCGCCCAAGTTGTCCTTGGAGAAGGAGATGGGGGATGGG
AAGACTTTGGGAGAGGCGAAGCTGCAAAATTCGTCATTGGTGATGGTGTT
GTTGCCTTGAATGGCCGCCCAAGACGACGGCAGCCGTCTCCGGTCCTTCC
TGGCTGTCATCGGGGACGGCATTGACCCCCAAGTTGCCCAACGCTTCCTT
GATGCGACAAATAATGACGTGGAACAGGCCATCGAACTCTATCTAGAGAG
CGGGGATGGTGGAGGCGGTGCTCCCCTGTCTTCTACTAGCGGTGATACTT
CTATTGCGGATGCTGCTCCTGACGCCGCTGCAATCTCTGCGGCCGCTCAA
GGAAAGGGAGATAGCAGGTATCGCGACGAGGAGGAATATGAGGTGGATGA
GGATGGCAACCCTGTGCGGAAGGCGGATCAAGTCAAAAAGCAGCGGCTTC
TAGCTGTCAGCCCTTTGATGGGAGGAGGAGGAGGAGGAGGTGGAGGAGGA
GGTGGAGGCGGGGGAGGAGTGGGCTATCTCCCTGTCAACCCTTTTCGGCA
TTTTGGTGCGGAGGCAAGAGGCGCTTTCGGTCGGGGTGGGAATCCATGGG
ATGTAGCGGGTGGAGGTGAGGGCATAAGCAAGCTGTTTCAACCTCCATTG
CAATTGTTGTTTCATGGTAGTTTTGCCGATGCCCGGGCCACGGCCAAGGA
GAAAAAGAAATGGTTGTTGGTGAACATTCAGAGAGAGGATATATTTGAGT
CGCATATGCTCAACCGGGATGTGTGGGCGGACGAGCTGGTTCATGCCATG
ATTCTAGAAGGTTTCATTTTTTGGCAAATGAGTGCAGGGCTTCCGGAGGC
TATGTCCTACCTTGCTCGGTATCATCTCGAGGACGACGGCAGCAGCCGCA
ACAACAACAACAACAACAATCAAAGCGCGGGCCATCTACCTCATATAGGT
GTGCTCGATCCTCGGACCCAACGGCTGATGTGGTGGCATACTGGTGCCCT
CCCTCCCCACCAGCTTGCAGATAAATTGACCGAAATTACGTCAACCTACT
CCTTGGACGACCACACGTCCGTGCTTCCTCCACCCCGTCCTCCCCCAGCA
CGTCATTCTACCCAGAGTGAGTATGATCGGTCGGAGGACGAACAGCTTGC
ATTGGCGTTGGCGGCATCTATGAAGGATGCGGAGCCCTCGGAGGGAGGAG
GAGGAAAGGAGGGAGGGAGGGCAGGAGGACGAAATCATGAGATTGTCGAG
TTGGATGATA

Synonyms

Publications