jgi.p|Nanoce1779_2|237893, mRNA_362 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|237893
Unique Name	mRNA_362
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1945
Alignment location	scaffold_3:902632..904576 -

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Properties


Property Name	Value
TranscriptId	237979
Track	FilteredModels2
ProteinId	237893

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:902632..904576 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|237893	gene_362	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|237893	mRNA_362-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_362	CDS_362	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:902632..904576-
coding sequence from alignment at scaffold_3:902632..904576-

mRNA sequence

>mRNA_362 ID=mRNA_362|Name=jgi.p|Nanoce1779_2|237893|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp
GGGGAATGGCGGGTACTTGTCGTCGTCGTTGAGGTAGGCTAGTAGGAGGG
TTGAAGGAGATAAGACAAGAGGAGGGGAGGGAGATAGGCGATGAGGCTCA
TGTTTTTTTATTCAATCGTTGACACGACCATACGCCTCCTCCTTCCTCCC
TTACCACGCACCCTCCAGCCGCTTAGCCCTGCCCTCCTCTTCTTTCCCCG
GCAGCTCCCCTCGGTTCAAAACTGTAGCCGCTGTGCTCACCGATCTGAAA
TCAACCAAAGTTCGAGTCGAAGACGCCCACAGCCGAAACGAGCGTTTCTG
CGAACAATCCCGAAACGAGCTGCAGGGTATCAATGAGGGCCTTGGGAAGA
TGCAAGCAGAATTTGAGGAGACAGCCAGGAGGTTTCAATATTTCCAGGAC
GTACGGGAGTACTTATCAAGTTTGTGTGGGTGCCTTAGGGAGAAAAAAGG
AATGATCGAGGAGCTGGAGGAGGCCATGGCGCAGGTGAGGAAGGGGGAAA
GGGATCGAAGGATAGCGGTGAGGGTGGAGGATCAAGAGGATGCCCTGGAG
GAAGTTTTGGAGAAGGAGAGGGAGGGAGGGAGGAAGGGGCAGATGTTGCT
GTCGTTGCAGGGATATATGCCGACGGTTGTGAAAACGTTGGCGGGAGGAG
GAGATGGGGGGGGGGAGAAGGGAGGACCGCTGGACGATATTGGGAGGGAC
GTGAGCGGGGATTTGGACAGAACGAGACGGAGGAAGCATCGGAGGAAACG
ACAAGAGCTGGCCTTGCGGAAGCTCATCGGCAACAGCAGCAGCAGCAATA
CTGGTGATACAACGGAAGCAGAAGCGACTTTGAGTGGAGCTGAGGAGGAT
GAAAGAGAAGTCGAGCTCTCTCATTCACGGCAAGCAAAGCTTTTGGAGGC
TGCTGCTATAATCTTTGAGGATACCGCGGACGAATTTCGGTCGTTGGATC
CCGTGGCTACTCGATTTGAAGAATGGAAGAAGAAGTATCCGAAGGATTAT
GCGACCGCATACGTGCCGGTTGCCTTGTCTCAAGTGTTCGAACCCTATGT
AAGAATGGAGATGGTCAGGTGGAATCCCTTAGAGGGAGGGAGGGACGGAG
GGGGGGAGCAAGGGGGGGAGGCTTTGGAGGGGTTTGCGTGGTTTGAACGG
TTGTTTGCGTATGGGCAGGGAGAGGGCGAGGGAGGTAGCGAAGGAGAGGG
CGAGAGAGAAGATGCGGATGAGCGGTTAGTGCCTGTAATGGTGGAGAAGG
TGGTGGTGGGTAAGTTGCAGCAAATATTGGAAGATTGTTATGATCCTGTG
TCGGGGAAGGAGACGCAGAGAGCAGTGGCTGCGGTGCAGGGGTTGTTGAT
ATATGAGCCGGGAAAACATGCGTTGGAAATGTTGCTGCGAGCGCCGTTGA
CAAGGATTGAGGAAGCGATCACTCAGGTGTGTTTGCCGCTGTTGAAGATG
GAGGGGGTTGTGGAGGAAAATGAGGAAAGGGGGGGAGGGATGGATTACCA
GCGACGACAGTTGTTTGTAGCGGTAAAGTTGTTTCGGAATGCCTGTGCGT
GGCATGAGGTCTTGGCACCACGGGCGTTGGCTCCCTTAGTATTAGGCAAA
TTGCTGGAAGGCAAAATATCACCGGCGCTGGAGAATCGCATGGATAATAC
ACCGGCCTCTCCTTCCTCCTTGCCCCCGTCCTCACCCCCCCTCTCGCTCT
CGCCTTTATCAACAATGATTGAGATTCTTGGGACGCTTGAAGCGCTCCTG
ACGGCGATTCCGCCGGCGTTGCTGTTAGAGAAGGGGGTAAGGCCATTGGT
GGGCGTCCATCGATTGCTTGACAAGCTTGAGAAGAGAGTGCAGGGGGTTT
CGCTCCTTAGGACGGTGAAACGGATGCGGGTGGCTTTTTCTGGTACTGGT
GGAGGTGAGGGAGGAAGGTAAAGAAGAAAAGAGGGGAAGGGAAAC

protein sequence of jgi.p|Nanoce1779_2|237893

>mRNA_362-protein ID=mRNA_362-protein|Name=jgi.p|Nanoce1779_2|237893|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp
MQAEFEETARRFQYFQDVREYLSSLCGCLREKKGMIEELEEAMAQVRKGE
RDRRIAVRVEDQEDALEEVLEKEREGGRKGQMLLSLQGYMPTVVKTLAGG
GDGGGEKGGPLDDIGRDVSGDLDRTRRRKHRRKRQELALRKLIGNSSSSN
TGDTTEAEATLSGAEEDEREVELSHSRQAKLLEAAAIIFEDTADEFRSLD
PVATRFEEWKKKYPKDYATAYVPVALSQVFEPYVRMEMVRWNPLEGGRDG
GGEQGGEALEGFAWFERLFAYGQGEGEGGSEGEGEREDADERLVPVMVEK
VVVGKLQQILEDCYDPVSGKETQRAVAAVQGLLIYEPGKHALEMLLRAPL
TRIEEAITQVCLPLLKMEGVVEENEERGGGMDYQRRQLFVAVKLFRNACA
WHEVLAPRALAPLVLGKLLEGKISPALENRMDNTPASPSSLPPSSPPLSL
SPLSTMIEILGTLEALLTAIPPALLLEKGVRPLVGVHRLLDKLEKRVQGV
SLLRTVKRMRVAFSGTGGGEGGR*

mRNA from alignment at scaffold_3:902632..904576-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_362 ID=mRNA_362|Name=jgi.p|Nanoce1779_2|237893|organism=Nannochloropsis oceanica|type=mRNA|length=1945bp|location=Sequence derived from alignment at scaffold_3:902632..904576- (Nannochloropsis oceanica)
GGGGAATGGCGGGTACTTGTCGTCGTCGTTGAGGTAGGCTAGTAGGAGGG
TTGAAGGAGATAAGACAAGAGGAGGGGAGGGAGATAGGCGATGAGGCTCA
TGTTTTTTTATTCAATCGTTGACACGACCATACGCCTCCTCCTTCCTCCC
TTACCACGCACCCTCCAGCCGCTTAGCCCTGCCCTCCTCTTCTTTCCCCG
GCAGCTCCCCTCGGTTCAAAACTGTAGCCGCTGTGCTCACCGATCTGAAA
TCAACCAAAGTTCGAGTCGAAGACGCCCACAGCCGAAACGAGCGTTTCTG
CGAACAATCCCGAAACGAGCTGCAGGGTATCAATGAGGGCCTTGGGAAGA
TGCAAGCAGAATTTGAGGAGACAGCCAGGAGGTTTCAATATTTCCAGGAC
GTACGGGAGTACTTATCAAGTTTGTGTGGGTGCCTTAGGGAGAAAAAAGG
AATGATCGAGGAGCTGGAGGAGGCCATGGCGCAGGTGAGGAAGGGGGAAA
GGGATCGAAGGATAGCGGTGAGGGTGGAGGATCAAGAGGATGCCCTGGAG
GAAGTTTTGGAGAAGGAGAGGGAGGGAGGGAGGAAGGGGCAGATGTTGCT
GTCGTTGCAGGGATATATGCCGACGGTTGTGAAAACGTTGGCGGGAGGAG
GAGATGGGGGGGGGGAGAAGGGAGGACCGCTGGACGATATTGGGAGGGAC
GTGAGCGGGGATTTGGACAGAACGAGACGGAGGAAGCATCGGAGGAAACG
ACAAGAGCTGGCCTTGCGGAAGCTCATCGGCAACAGCAGCAGCAGCAATA
CTGGTGATACAACGGAAGCAGAAGCGACTTTGAGTGGAGCTGAGGAGGAT
GAAAGAGAAGTCGAGCTCTCTCATTCACGGCAAGCAAAGCTTTTGGAGGC
TGCTGCTATAATCTTTGAGGATACCGCGGACGAATTTCGGTCGTTGGATC
CCGTGGCTACTCGATTTGAAGAATGGAAGAAGAAGTATCCGAAGGATTAT
GCGACCGCATACGTGCCGGTTGCCTTGTCTCAAGTGTTCGAACCCTATGT
AAGAATGGAGATGGTCAGGTGGAATCCCTTAGAGGGAGGGAGGGACGGAG
GGGGGGAGCAAGGGGGGGAGGCTTTGGAGGGGTTTGCGTGGTTTGAACGG
TTGTTTGCGTATGGGCAGGGAGAGGGCGAGGGAGGTAGCGAAGGAGAGGG
CGAGAGAGAAGATGCGGATGAGCGGTTAGTGCCTGTAATGGTGGAGAAGG
TGGTGGTGGGTAAGTTGCAGCAAATATTGGAAGATTGTTATGATCCTGTG
TCGGGGAAGGAGACGCAGAGAGCAGTGGCTGCGGTGCAGGGGTTGTTGAT
ATATGAGCCGGGAAAACATGCGTTGGAAATGTTGCTGCGAGCGCCGTTGA
CAAGGATTGAGGAAGCGATCACTCAGGTGTGTTTGCCGCTGTTGAAGATG
GAGGGGGTTGTGGAGGAAAATGAGGAAAGGGGGGGAGGGATGGATTACCA
GCGACGACAGTTGTTTGTAGCGGTAAAGTTGTTTCGGAATGCCTGTGCGT
GGCATGAGGTCTTGGCACCACGGGCGTTGGCTCCCTTAGTATTAGGCAAA
TTGCTGGAAGGCAAAATATCACCGGCGCTGGAGAATCGCATGGATAATAC
ACCGGCCTCTCCTTCCTCCTTGCCCCCGTCCTCACCCCCCCTCTCGCTCT
CGCCTTTATCAACAATGATTGAGATTCTTGGGACGCTTGAAGCGCTCCTG
ACGGCGATTCCGCCGGCGTTGCTGTTAGAGAAGGGGGTAAGGCCATTGGT
GGGCGTCCATCGATTGCTTGACAAGCTTGAGAAGAGAGTGCAGGGGGTTT
CGCTCCTTAGGACGGTGAAACGGATGCGGGTGGCTTTTTCTGGTACTGGT
GGAGGTGAGGGAGGAAGGTAAAGAAGAAAAGAGGGGAAGGGAAAC

Coding sequence (CDS) from alignment at scaffold_3:902632..904576-

>mRNA_362 ID=mRNA_362|Name=jgi.p|Nanoce1779_2|237893|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_3:902632..904576- (Nannochloropsis oceanica)
ATGCAAGCAGAATTTGAGGAGACAGCCAGGAGGTTTCAATATTTCCAGGA
CGTACGGGAGTACTTATCAAGTTTGTGTGGGTGCCTTAGGGAGAAAAAAG
GAATGATCGAGGAGCTGGAGGAGGCCATGGCGCAGGTGAGGAAGGGGGAA
AGGGATCGAAGGATAGCGGTGAGGGTGGAGGATCAAGAGGATGCCCTGGA
GGAAGTTTTGGAGAAGGAGAGGGAGGGAGGGAGGAAGGGGCAGATGTTGC
TGTCGTTGCAGGGATATATGCCGACGGTTGTGAAAACGTTGGCGGGAGGA
GGAGATGGGGGGGGGGAGAAGGGAGGACCGCTGGACGATATTGGGAGGGA
CGTGAGCGGGGATTTGGACAGAACGAGACGGAGGAAGCATCGGAGGAAAC
GACAAGAGCTGGCCTTGCGGAAGCTCATCGGCAACAGCAGCAGCAGCAAT
ACTGGTGATACAACGGAAGCAGAAGCGACTTTGAGTGGAGCTGAGGAGGA
TGAAAGAGAAGTCGAGCTCTCTCATTCACGGCAAGCAAAGCTTTTGGAGG
CTGCTGCTATAATCTTTGAGGATACCGCGGACGAATTTCGGTCGTTGGAT
CCCGTGGCTACTCGATTTGAAGAATGGAAGAAGAAGTATCCGAAGGATTA
TGCGACCGCATACGTGCCGGTTGCCTTGTCTCAAGTGTTCGAACCCTATG
TAAGAATGGAGATGGTCAGGTGGAATCCCTTAGAGGGAGGGAGGGACGGA
GGGGGGGAGCAAGGGGGGGAGGCTTTGGAGGGGTTTGCGTGGTTTGAACG
GTTGTTTGCGTATGGGCAGGGAGAGGGCGAGGGAGGTAGCGAAGGAGAGG
GCGAGAGAGAAGATGCGGATGAGCGGTTAGTGCCTGTAATGGTGGAGAAG
GTGGTGGTGGGTAAGTTGCAGCAAATATTGGAAGATTGTTATGATCCTGT
GTCGGGGAAGGAGACGCAGAGAGCAGTGGCTGCGGTGCAGGGGTTGTTGA
TATATGAGCCGGGAAAACATGCGTTGGAAATGTTGCTGCGAGCGCCGTTG
ACAAGGATTGAGGAAGCGATCACTCAGGTGTGTTTGCCGCTGTTGAAGAT
GGAGGGGGTTGTGGAGGAAAATGAGGAAAGGGGGGGAGGGATGGATTACC
AGCGACGACAGTTGTTTGTAGCGGTAAAGTTGTTTCGGAATGCCTGTGCG
TGGCATGAGGTCTTGGCACCACGGGCGTTGGCTCCCTTAGTATTAGGCAA
ATTGCTGGAAGGCAAAATATCACCGGCGCTGGAGAATCGCATGGATAATA
CACCGGCCTCTCCTTCCTCCTTGCCCCCGTCCTCACCCCCCCTCTCGCTC
TCGCCTTTATCAACAATGATTGAGATTCTTGGGACGCTTGAAGCGCTCCT
GACGGCGATTCCGCCGGCGTTGCTGTTAGAGAAGGGGGTAAGGCCATTGG
TGGGCGTCCATCGATTGCTTGACAAGCTTGAGAAGAGAGTGCAGGGGGTT
TCGCTCCTTAGGACGGTGAAACGGATGCGGGTGGCTTTTTCTGGTACTGG
TGGAGGTGAGGGAGGAAGGTAA

Synonyms

Publications