jgi.p|Nanoce1779_2|582799, mRNA_3619 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582799
Unique Name	mRNA_3619
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2396
Alignment location	scaffold_6:787804..790199 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582885
Track	FilteredModels2
ProteinId	582799

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:787804..790199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582799	gene_3619	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582799	mRNA_3619-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3619	CDS_3619	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:787804..790199+
coding sequence from alignment at scaffold_6:787804..790199+

mRNA sequence

>mRNA_3619 ID=mRNA_3619|Name=jgi.p|Nanoce1779_2|582799|organism=Nannochloropsis oceanica|type=mRNA|length=2396bp
GGGAACTACACGCCGTCGGACTGTTTCACTCCTTCGACGGTTTCCTCGGA
GGAGGAGGATGAAGAGGAAGAGGAGAACGTGGAAATGCGGCAGCTGCAGG
AACAGGAGCAGCAACGACAACCAGGATATGGGCACCACCGACAACAGCCA
AAAGCCCAGAAGCCGAAGCAGCAGCGACAATCAAAGAAGGGAAAAGGTGC
CATGGTCTGCATAAAGACGGAGGAGCCTGACGATCATCAAAAGCCACAGG
CTCAGTCAGGGCAACAACAACTACCACGCGTCAAATCTTGGTCTGCCGTC
AATAACAGCAGCAAAAGCAGCAACACATTCCGCGCCGGCACAAAAGAGAA
GGCGACAGCCACGGCCATGGCGGCGGCGGAGGCGCTGAGTCGGGAACAGG
AGTTGAAGAGGTGGGGTGTATTGATGTATCAGGTCGCAACAAAGACGATT
CTTCACGGAGATGTGGACACGGCTCGACGGCAGATCTTGCGGAGCGCCCA
GGCAGAGATGGAAGGAGAGGGGTCGTGGACGAACAAAGAGGCGTTGCTTG
CTTTATTGCATCGGCAGCTGGGGATCAGTGATGCAGGGAACAATCCTAGC
TCGGGAAACAGCGGCGGCAGCAGCAGCAGTGGCAGTGCTGCTACCATCAC
ACTTGTTGGAGGGAAAGTCGTGCCTGCCGGGGCCTCTCTCGAGTCCCTTG
CGAACGCCATTGCCGACGCCGTGCTAGGGGAAGAAGAGAAAAAGGAAACA
AGCTTCGCAACAGCAGCACCATCATCAGCAGCACCAGCAGCACCCATGAC
GAAGATCCAATCCAGGCCACATGAGTTCCGTACAGAGGTTCCAGAGCCGA
TATCTACCATGTTCCGTTCCTCCCCCTCCTCTGTCTCCGCCGTCGCCCTG
CCTGCCCTTGTCCCTTCCTCTTCTGCCCACCATCTCAAACGCCAACAACC
GCAGCAGCAACAACATCAGCAACAACAACCACCGAATGCCGCCGCCACGC
GTTCCATCCTCGCTGCCCTCCAACAAACTCGCGACACCAAAATGCGCCAA
CGTGCTTTTGTCGCCCTGGGAAAGCTTGGGCCCAAGGCAGCTGTGCCCGA
GCTGGTTCTGGCGTTAATGCCCATACTCGAGAAGGATGCTGATCCCGTTT
CCCGTCGTCTGGCGGCGTGGACCCTGGGAAGTATGGGTAATGGAAGCCCG
GAGAAGGTAGCTCAAGCTGCGATGCCCCTGATACGTGCCTTGGGGGATAA
GGAGGCGGCGGTACGAGCAGCTGCTGCGTGGGCGCTAGGACACCTAGGGA
AGGTGTGTGAAGAGAGGGGGGCGGTGGCTACGCTGTTGCATCGGTCAGTG
AAGGATGCCGACCCTCAGGTGAGGGAAATGGCGTTGAAAAGCATAACCAG
GTTGAGGAGGGTTACGGGGAAAAGGAGAAGGAATGGAAGGGAGGAAGAGT
GTTCGGATGAAGGGAAGGACGGGGCTGCAAAAGATACAGAGTTGACATCA
GGCGGGAGACCGAAGGCGTATGCGAAACGGAGGCCGTTTTGCTTGGCAAG
CGCGACCCTATCGATGGAGATGGCAAGTATTGGCGAAGGAAGGGGAGGGA
TGAGGGGGCTGATGCGGCCGTCGCCCACTGTGGTGGACGTTCATCAGTTT
AGCTTTGGCCCCCGGAATTGTAGCATCAACAGCAGCCTAGGCACGAGACC
GGAGGCAGGGGAGTGCGGCAGCCGGAGCAACAGTGTGGGTGTCAAAATCG
AACCATCAATGATGCCGCAAGCCCAATACCTCTAAATTCGGGTCCCGTTT
GTCCTTTCCTCCCTTTCTCTTTCGAACGTAGAAGAGCTCTGAGTTTGTTG
TGACACTTTGCTACTTATCGAGAGGGGAAAATGCGGAGATTGATTGAGAG
GGGACACCGCAGGAAAAGCCAAAAAGGGAGGGATGATGGTTGAACAAGCA
CAAGCACACGCATGTACTTACAAAAAGGGGACACACATACAAACTCTATG
AGTGGCGTCTCAATAGAATCGGTAGGGTGACGTTTCGTACGGACTGTTTA
GGGATCGGTCCGCTTGCATGTTATCATGTCATTTCAATTTGGAAGTATGA
GTGCGAAGGAGAGATGGAGTGAGAGAAAGAGGGAGAAAAATGAAGATGCG
ATGATCACTATCGAAAGGAAGGAGGTCCAGACGATAGGGAGGTGGAAGTC
AAGATGTAGAGAAGGCATGTGTACGTAGTAGTTTCAACGCGCTGAGGTGT
GAGTGCAGACCCTGGAAATAGAGAAGGACAATAATCGGAACCGAATCAAA
TTTTGATGAAGTGTGAGATGATGACGAGGAGTAAAAATCCCGAGCAATGA
ATCAAATAACACCATTAAGCCTGCCCTTGGATGATTCAAACACCCC

protein sequence of jgi.p|Nanoce1779_2|582799

>mRNA_3619-protein ID=mRNA_3619-protein|Name=jgi.p|Nanoce1779_2|582799|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MRQLQEQEQQRQPGYGHHRQQPKAQKPKQQRQSKKGKGAMVCIKTEEPDD
HQKPQAQSGQQQLPRVKSWSAVNNSSKSSNTFRAGTKEKATATAMAAAEA
LSREQELKRWGVLMYQVATKTILHGDVDTARRQILRSAQAEMEGEGSWTN
KEALLALLHRQLGISDAGNNPSSGNSGGSSSSGSAATITLVGGKVVPAGA
SLESLANAIADAVLGEEEKKETSFATAAPSSAAPAAPMTKIQSRPHEFRT
EVPEPISTMFRSSPSSVSAVALPALVPSSSAHHLKRQQPQQQQHQQQQPP
NAAATRSILAALQQTRDTKMRQRAFVALGKLGPKAAVPELVLALMPILEK
DADPVSRRLAAWTLGSMGNGSPEKVAQAAMPLIRALGDKEAAVRAAAAWA
LGHLGKVCEERGAVATLLHRSVKDADPQVREMALKSITRLRRVTGKRRRN
GREEECSDEGKDGAAKDTELTSGGRPKAYAKRRPFCLASATLSMEMASIG
EGRGGMRGLMRPSPTVVDVHQFSFGPRNCSINSSLGTRPEAGECGSRSNS
VGVKIEPSMMPQAQYL*

mRNA from alignment at scaffold_6:787804..790199+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3619 ID=mRNA_3619|Name=jgi.p|Nanoce1779_2|582799|organism=Nannochloropsis oceanica|type=mRNA|length=2396bp|location=Sequence derived from alignment at scaffold_6:787804..790199+ (Nannochloropsis oceanica)
GGGAACTACACGCCGTCGGACTGTTTCACTCCTTCGACGGTTTCCTCGGA
GGAGGAGGATGAAGAGGAAGAGGAGAACGTGGAAATGCGGCAGCTGCAGG
AACAGGAGCAGCAACGACAACCAGGATATGGGCACCACCGACAACAGCCA
AAAGCCCAGAAGCCGAAGCAGCAGCGACAATCAAAGAAGGGAAAAGGTGC
CATGGTCTGCATAAAGACGGAGGAGCCTGACGATCATCAAAAGCCACAGG
CTCAGTCAGGGCAACAACAACTACCACGCGTCAAATCTTGGTCTGCCGTC
AATAACAGCAGCAAAAGCAGCAACACATTCCGCGCCGGCACAAAAGAGAA
GGCGACAGCCACGGCCATGGCGGCGGCGGAGGCGCTGAGTCGGGAACAGG
AGTTGAAGAGGTGGGGTGTATTGATGTATCAGGTCGCAACAAAGACGATT
CTTCACGGAGATGTGGACACGGCTCGACGGCAGATCTTGCGGAGCGCCCA
GGCAGAGATGGAAGGAGAGGGGTCGTGGACGAACAAAGAGGCGTTGCTTG
CTTTATTGCATCGGCAGCTGGGGATCAGTGATGCAGGGAACAATCCTAGC
TCGGGAAACAGCGGCGGCAGCAGCAGCAGTGGCAGTGCTGCTACCATCAC
ACTTGTTGGAGGGAAAGTCGTGCCTGCCGGGGCCTCTCTCGAGTCCCTTG
CGAACGCCATTGCCGACGCCGTGCTAGGGGAAGAAGAGAAAAAGGAAACA
AGCTTCGCAACAGCAGCACCATCATCAGCAGCACCAGCAGCACCCATGAC
GAAGATCCAATCCAGGCCACATGAGTTCCGTACAGAGGTTCCAGAGCCGA
TATCTACCATGTTCCGTTCCTCCCCCTCCTCTGTCTCCGCCGTCGCCCTG
CCTGCCCTTGTCCCTTCCTCTTCTGCCCACCATCTCAAACGCCAACAACC
GCAGCAGCAACAACATCAGCAACAACAACCACCGAATGCCGCCGCCACGC
GTTCCATCCTCGCTGCCCTCCAACAAACTCGCGACACCAAAATGCGCCAA
CGTGCTTTTGTCGCCCTGGGAAAGCTTGGGCCCAAGGCAGCTGTGCCCGA
GCTGGTTCTGGCGTTAATGCCCATACTCGAGAAGGATGCTGATCCCGTTT
CCCGTCGTCTGGCGGCGTGGACCCTGGGAAGTATGGGTAATGGAAGCCCG
GAGAAGGTAGCTCAAGCTGCGATGCCCCTGATACGTGCCTTGGGGGATAA
GGAGGCGGCGGTACGAGCAGCTGCTGCGTGGGCGCTAGGACACCTAGGGA
AGGTGTGTGAAGAGAGGGGGGCGGTGGCTACGCTGTTGCATCGGTCAGTG
AAGGATGCCGACCCTCAGGTGAGGGAAATGGCGTTGAAAAGCATAACCAG
GTTGAGGAGGGTTACGGGGAAAAGGAGAAGGAATGGAAGGGAGGAAGAGT
GTTCGGATGAAGGGAAGGACGGGGCTGCAAAAGATACAGAGTTGACATCA
GGCGGGAGACCGAAGGCGTATGCGAAACGGAGGCCGTTTTGCTTGGCAAG
CGCGACCCTATCGATGGAGATGGCAAGTATTGGCGAAGGAAGGGGAGGGA
TGAGGGGGCTGATGCGGCCGTCGCCCACTGTGGTGGACGTTCATCAGTTT
AGCTTTGGCCCCCGGAATTGTAGCATCAACAGCAGCCTAGGCACGAGACC
GGAGGCAGGGGAGTGCGGCAGCCGGAGCAACAGTGTGGGTGTCAAAATCG
AACCATCAATGATGCCGCAAGCCCAATACCTCTAAATTCGGGTCCCGTTT
GTCCTTTCCTCCCTTTCTCTTTCGAACGTAGAAGAGCTCTGAGTTTGTTG
TGACACTTTGCTACTTATCGAGAGGGGAAAATGCGGAGATTGATTGAGAG
GGGACACCGCAGGAAAAGCCAAAAAGGGAGGGATGATGGTTGAACAAGCA
CAAGCACACGCATGTACTTACAAAAAGGGGACACACATACAAACTCTATG
AGTGGCGTCTCAATAGAATCGGTAGGGTGACGTTTCGTACGGACTGTTTA
GGGATCGGTCCGCTTGCATGTTATCATGTCATTTCAATTTGGAAGTATGA
GTGCGAAGGAGAGATGGAGTGAGAGAAAGAGGGAGAAAAATGAAGATGCG
ATGATCACTATCGAAAGGAAGGAGGTCCAGACGATAGGGAGGTGGAAGTC
AAGATGTAGAGAAGGCATGTGTACGTAGTAGTTTCAACGCGCTGAGGTGT
GAGTGCAGACCCTGGAAATAGAGAAGGACAATAATCGGAACCGAATCAAA
TTTTGATGAAGTGTGAGATGATGACGAGGAGTAAAAATCCCGAGCAATGA
ATCAAATAACACCATTAAGCCTGCCCTTGGATGATTCAAACACCCC

Coding sequence (CDS) from alignment at scaffold_6:787804..790199+

>mRNA_3619 ID=mRNA_3619|Name=jgi.p|Nanoce1779_2|582799|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_6:787804..790199+ (Nannochloropsis oceanica)
ATGCGGCAGCTGCAGGAACAGGAGCAGCAACGACAACCAGGATATGGGCA
CCACCGACAACAGCCAAAAGCCCAGAAGCCGAAGCAGCAGCGACAATCAA
AGAAGGGAAAAGGTGCCATGGTCTGCATAAAGACGGAGGAGCCTGACGAT
CATCAAAAGCCACAGGCTCAGTCAGGGCAACAACAACTACCACGCGTCAA
ATCTTGGTCTGCCGTCAATAACAGCAGCAAAAGCAGCAACACATTCCGCG
CCGGCACAAAAGAGAAGGCGACAGCCACGGCCATGGCGGCGGCGGAGGCG
CTGAGTCGGGAACAGGAGTTGAAGAGGTGGGGTGTATTGATGTATCAGGT
CGCAACAAAGACGATTCTTCACGGAGATGTGGACACGGCTCGACGGCAGA
TCTTGCGGAGCGCCCAGGCAGAGATGGAAGGAGAGGGGTCGTGGACGAAC
AAAGAGGCGTTGCTTGCTTTATTGCATCGGCAGCTGGGGATCAGTGATGC
AGGGAACAATCCTAGCTCGGGAAACAGCGGCGGCAGCAGCAGCAGTGGCA
GTGCTGCTACCATCACACTTGTTGGAGGGAAAGTCGTGCCTGCCGGGGCC
TCTCTCGAGTCCCTTGCGAACGCCATTGCCGACGCCGTGCTAGGGGAAGA
AGAGAAAAAGGAAACAAGCTTCGCAACAGCAGCACCATCATCAGCAGCAC
CAGCAGCACCCATGACGAAGATCCAATCCAGGCCACATGAGTTCCGTACA
GAGGTTCCAGAGCCGATATCTACCATGTTCCGTTCCTCCCCCTCCTCTGT
CTCCGCCGTCGCCCTGCCTGCCCTTGTCCCTTCCTCTTCTGCCCACCATC
TCAAACGCCAACAACCGCAGCAGCAACAACATCAGCAACAACAACCACCG
AATGCCGCCGCCACGCGTTCCATCCTCGCTGCCCTCCAACAAACTCGCGA
CACCAAAATGCGCCAACGTGCTTTTGTCGCCCTGGGAAAGCTTGGGCCCA
AGGCAGCTGTGCCCGAGCTGGTTCTGGCGTTAATGCCCATACTCGAGAAG
GATGCTGATCCCGTTTCCCGTCGTCTGGCGGCGTGGACCCTGGGAAGTAT
GGGTAATGGAAGCCCGGAGAAGGTAGCTCAAGCTGCGATGCCCCTGATAC
GTGCCTTGGGGGATAAGGAGGCGGCGGTACGAGCAGCTGCTGCGTGGGCG
CTAGGACACCTAGGGAAGGTGTGTGAAGAGAGGGGGGCGGTGGCTACGCT
GTTGCATCGGTCAGTGAAGGATGCCGACCCTCAGGTGAGGGAAATGGCGT
TGAAAAGCATAACCAGGTTGAGGAGGGTTACGGGGAAAAGGAGAAGGAAT
GGAAGGGAGGAAGAGTGTTCGGATGAAGGGAAGGACGGGGCTGCAAAAGA
TACAGAGTTGACATCAGGCGGGAGACCGAAGGCGTATGCGAAACGGAGGC
CGTTTTGCTTGGCAAGCGCGACCCTATCGATGGAGATGGCAAGTATTGGC
GAAGGAAGGGGAGGGATGAGGGGGCTGATGCGGCCGTCGCCCACTGTGGT
GGACGTTCATCAGTTTAGCTTTGGCCCCCGGAATTGTAGCATCAACAGCA
GCCTAGGCACGAGACCGGAGGCAGGGGAGTGCGGCAGCCGGAGCAACAGT
GTGGGTGTCAAAATCGAACCATCAATGATGCCGCAAGCCCAATACCTCTA
A

Synonyms

Publications