jgi.p|Nanoce1779_2|539530, mRNA_3618 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|539530
Unique NamemRNA_3618
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length740
Alignment locationscaffold_6:786561..787803 +

Link to JBrowse

Properties
Property NameValue
TranscriptId539616
TrackFilteredModels2
ProteinId539530
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:786561..787803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539530gene_3618Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539530mRNA_3618-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3618CDS_3618Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3618 ID=mRNA_3618|Name=jgi.p|Nanoce1779_2|539530|organism=Nannochloropsis oceanica|type=mRNA|length=740bp
ACAGGCACGGGACTACAGCCTCTTGCGGGATTGGGCGCCTTGCGCGGCCC
TGAACGAGTTCCCAACTAGTCACCCTCTCGGACGATCATTTGCAAACGAG
GGCCTCGCGGCTATCAACTCATCCCTGCAGAATGTGCCGCATGCAAGGCT
CCGGGACGGCGCCTAACCCGTCGCCCTTCGGGTTCTGGCCCACCATTCAA
TATCAACAACAAAATCAACACCAACATCAGCAGCAGCATCGAGAGCACTC
AACCATCCGGCAAGCAGCAGCCCGCCGTCGCTACAAGTACGAGACCAAGC
TGGGCGAAGGCCATCACGGTGGCATCATGTACAAAGCCCGCTGCGACCGG
GGCAAGCTTTGGGCTATCGAGGTCATCTCGGACCCCGCCAAGGCCACAGC
CGCCACCGCCCTCGCGAAGCAATACCATCTCACTCAAGACGAGCCATGGA
TGCAATCGACCCCTGCGGGCTCGGCGCCGCAGCAGGCCGCGGGGAAGACA
ATTGATTTGTGCGTGCCAGAGGAAATGTACATCGACCACAAGGGTGCGTG
GTGTATTGTCTCGAAGCTGCCGAAGGAGTCGATGCGGCAACGGATTATGA
CTGATGCCTCTTACGGGCTGGAGAGCGTGGTGAATTGGGCGAGGCAATTA
GCATCGTCCTTGGCGGGAGCCCCGAAGCAGGAGAGGGATGTCGTCAGCCT
GGACAACGTCTTTCTGGACGACGCGGACTGTGTCTTGGTG
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protein sequence of jgi.p|Nanoce1779_2|539530

>mRNA_3618-protein ID=mRNA_3618-protein|Name=jgi.p|Nanoce1779_2|539530|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MCRMQGSGTAPNPSPFGFWPTIQYQQQNQHQHQQQHREHSTIRQAAARRR
YKYETKLGEGHHGGIMYKARCDRGKLWAIEVISDPAKATAATALAKQYHL
TQDEPWMQSTPAGSAPQQAAGKTIDLCVPEEMYIDHKGAWCIVSKLPKES
MRQRIMTDASYGLESVVNWARQLASSLAGAPKQERDVVSLDNVFLDDADC
VLV
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mRNA from alignment at scaffold_6:786561..787803+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3618 ID=mRNA_3618|Name=jgi.p|Nanoce1779_2|539530|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp|location=Sequence derived from alignment at scaffold_6:786561..787803+ (Nannochloropsis oceanica)
ACAGGCACGGGACTACAGCCTCTTGCGGGATTGGGCGCCTTGCGCGGCCC
TGAACGAGTTCCCAACTAGTCACCCTCTCGGACGATCATTTGCAAACGAG
GGCCTCGCGGCTATCAACTCATCCCTGCAGAATGTGCCGCATGGTACGTG
TAAGGGAGGATTGACTCAAAGACGTTGAGTTTGGGGAGGGAGGGAATGGA
CGATTTCAGCAGCTTTTGCCGGCATATGTCCCGCGAAACGACGTCGCGTC
GCCGTGTGACTAACACCTCTACCAGTCGGTTATATGTGGTTTGGTCGGGG
AGGAAATACAGTGCCTCTCGCCGCAGTACTCTTTTCTTGTCGCGTCGCGT
CGCGTCGCGTCGCGTGCTCACTCAGCCTGCAGGAGACACATATTTTTGCG
TGGATATGCGAATCGCCTGCGTTTTCTATCAGTTATGCAACAAGTGAAGT
GCACATGCATGAGTGCGGCGGCGAAGTCCTGACGTCCTCGGTACCATCAG
AAATCATGACCTTGTTTAGACCACCCGACCTTCCTTCTGATCCATGCTAT
TTCACCTCGCACTCGGTCGGGTCTCTTTCAACGTCTCGATGTCTTATCTC
TTCGATGTCTACCCTCCCTCCCCCTCTTCCTTTCTCCCTTCCACAGCAAG
GCTCCGGGACGGCGCCTAACCCGTCGCCCTTCGGGTTCTGGCCCACCATT
CAATATCAACAACAAAATCAACACCAACATCAGCAGCAGCATCGAGAGCA
CTCAACCATCCGGCAAGCAGCAGCCCGCCGTCGCTACAAGTACGAGACCA
AGCTGGGCGAAGGCCATCACGGTGGCATCATGTACAAAGCCCGCTGCGAC
CGGGGCAAGCTTTGGGCTATCGAGGTCATCTCGGACCCCGCCAAGGCCAC
AGCCGCCACCGCCCTCGCGAAGCAATACCATCTCACTCAAGACGAGCCAT
GGATGCAATCGACCCCTGCGGGCTCGGCGCCGCAGCAGGCCGCGGGGAAG
ACAATTGATTTGTGCGTGCCAGAGGAAATGTACATCGACCACAAGGGTGC
GTGGTGTATTGTCTCGAAGCTGCCGAAGGAGTCGATGCGGCAACGGATTA
TGACTGATGCCTCTTACGGGCTGGAGAGCGTGGTGAATTGGGCGAGGCAA
TTAGCATCGTCCTTGGCGGGAGCCCCGAAGCAGGAGAGGGATGTCGTCAG
CCTGGACAACGTCTTTCTGGACGACGCGGACTGTGTCTTGGTG
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Coding sequence (CDS) from alignment at scaffold_6:786561..787803+

>mRNA_3618 ID=mRNA_3618|Name=jgi.p|Nanoce1779_2|539530|organism=Nannochloropsis oceanica|type=CDS|length=1218bp|location=Sequence derived from alignment at scaffold_6:786561..787803+ (Nannochloropsis oceanica)
ATGTGCCGCATGCAAGGCTCCGGGACGGCGCCTAACCCGTCGCCCTTCGG
GTTCTGGCCCACCATTCAATATCAACAACAAAATCAACACCAACATCAGC
AGCAGCATCGAGAGCACTCAACCATCCGGCAAGCAGCAGCCCGCCGTCGC
TACAAGTACGAGACCAAGCTGGGCGAAGGCCATCACGGTGGCATCATGTA
CAAAGCCCGCTGCGACCGGGGCAAGCTTTGGGCTATCGAGGTCATCTCGG
ACCCCGCCAAGGCCACAGCCGCCACCGCCCTCGCGAAGCAATACCATCTC
ACTCAAGACGAGCCATGGATGCAATCGACCCCTGCGGGCTCGGCGCCGCA
GCAGGCCGCGGGGAAGACAATTGATTTGTGCGTGCCAGAGGAAATGTACA
TCGACCACAAGGGTGCGTGGTGTATTGTCTCGAAGCTGCCGAAGGAGTCG
ATGCGGCAACGGATTATGACTGATGCCTCTTACGGGCTGGAGAGCGTGGT
GAATTGGGCGAGGCAATTAGCATCGTCCTTGGCGGGAGCCCCGAAGCAGG
AGAGGGATGTCGTCAGCCTGGACAACGTCTTTCTGGACGACGCGGACTGT
GTCTTGGTGATGTGCCGCATGCAAGGCTCCGGGACGGCGCCTAACCCGTC
GCCCTTCGGGTTCTGGCCCACCATTCAATATCAACAACAAAATCAACACC
AACATCAGCAGCAGCATCGAGAGCACTCAACCATCCGGCAAGCAGCAGCC
CGCCGTCGCTACAAGTACGAGACCAAGCTGGGCGAAGGCCATCACGGTGG
CATCATGTACAAAGCCCGCTGCGACCGGGGCAAGCTTTGGGCTATCGAGG
TCATCTCGGACCCCGCCAAGGCCACAGCCGCCACCGCCCTCGCGAAGCAA
TACCATCTCACTCAAGACGAGCCATGGATGCAATCGACCCCTGCGGGCTC
GGCGCCGCAGCAGGCCGCGGGGAAGACAATTGATTTGTGCGTGCCAGAGG
AAATGTACATCGACCACAAGGGTGCGTGGTGTATTGTCTCGAAGCTGCCG
AAGGAGTCGATGCGGCAACGGATTATGACTGATGCCTCTTACGGGCTGGA
GAGCGTGGTGAATTGGGCGAGGCAATTAGCATCGTCCTTGGCGGGAGCCC
CGAAGCAGGAGAGGGATGTCGTCAGCCTGGACAACGTCTTTCTGGACGAC
GCGGACTGTGTCTTGGTG
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Synonyms
Publications