jgi.p|Nanoce1779_2|582793, mRNA_3616 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582793
Unique Name	mRNA_3616
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1491
Alignment location	scaffold_6:780554..782462 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582879
Track	FilteredModels2
ProteinId	582793

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:780554..782462 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582793	gene_3616	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582793	mRNA_3616-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3616	CDS_3616	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:780554..782462+
coding sequence from alignment at scaffold_6:780554..782462+

mRNA sequence

>mRNA_3616 ID=mRNA_3616|Name=jgi.p|Nanoce1779_2|582793|organism=Nannochloropsis oceanica|type=mRNA|length=1491bp
CAGACTAGCCATGCTTGCATTTGCACGCACTGGTCTGGCTCGTTTAGCGG
GTTCCAGTCGACAAAAGCTAGCCTCTTCTGCCAACGCTCAGCATCGTGCC
TTCGGAACCGAGGCTTTAGAGAAGACGGCCCTTTACGACCTGCACCTGGC
ACACAAGGGCAAGATGGTCCCGTTCGCTGGGTACGAGCTCCCAGTCCTCT
ACGAGGTGCCAGAATGGGGAGGGATTGTGAAAGAGCACCTGCATTGCCGT
GCCAAAGCGTCGGTTTTTGATGTCTCGCACATGGGCCAGATCAAATGGCA
TGGGAAAGATAGGGTTAAGTTTTTGGAGACGTTGGTGGTGGGCGATGTGG
CGGGATTGGGCGTTGGGGAGGCGAGATTAAGTTTGTTGACCAACATGGAA
GGGGGGATCATTGATGATACGATCATTACGAATGCTGGGGACTTCACTTA
TATGATTGTTAATGGCGCAACCAAGACAGGTGATATGAAGCATTTTAACG
AGAGGATGAAGAATTTTGGAGGGGATGTGTGTTTTGAGTATTTCCATGAG
CAACAGCTCCTGGCGCTACAAGGCCCATCGGCGGCTGCTGTCTTGCAAGC
CCTCCTCCCCTCGGACCTGGATTTGAAAAAGGTGAATTTTATGACGGGCT
TCGATACCACTGTGGGAGGGCTGAAGGCGAGGGTGACAAGGTGTGGATAT
ACGGGGGAAGATGGGTTCGAGGTGTCGGTGGGGTGGAAGGATGCCACGGC
GTTGGCGGACTTGTTTTTGAAGAGCCCGGAGGTGAGGTTGTCGGGTTTGG
GGGCACGAGATTCCCTGCGGCTGGAATCGGGCTTGTGTTTGTATGGGAAT
GATATTGACGCCACCACCACCCCGGTGGAGGCGGCGTTGGGCTGGACGAT
GGGTGGCCCGAAGGGGAGGCGTAGGAAGGAGCAGGGGTTTTTAGGGGCGG
AGAAGTTTCTGACTCCTGAGGGGAAGTTTTTGCCAATCACGAGAAAGAGG
GTGGGGTTGGTGGGGTTTAAAGCACCTGCCAGGGCACATACAGAGATTTT
TGATGTGTCGGGAGGGTCGAAGATTGGGGAGGTGACAAGTGGGACGTTTA
GCCCGTCGTTGGGGAAGCCGATTGCGATGGGTTATGTGGCCACGGAACAT
GCGAAAGAAGGGACCAAGGTGGCGGTAAAGGTGAGGGGGAAATTGCAGGA
GGCGGAGATTACCAAAATGCCGTTTGTGACGCAGCATTATTACAAGGCCA
CCTGAAAAGAGGTGAAAGACTGGTAGGAGGAAAGGGAGGGGAGGTTGGAC
GGGGGGCGGGAGGAGGTGAAACAGTTGTGCGACATGGTGTTCATGAGTAG
CGCGTGATGGTGCATAGTGTGTGAGTGTAAGGGATGGCCACGTCAGTACC
GAATCCGTATAGAACTTTGGAAAGAAACCCCCAAAATAAAGCTGGAGTCA
AGCTCGATCCGTCATATTTGTACTAGCCATGTTCGCCAGCT

protein sequence of jgi.p|Nanoce1779_2|582793

>mRNA_3616-protein ID=mRNA_3616-protein|Name=jgi.p|Nanoce1779_2|582793|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MLAFARTGLARLAGSSRQKLASSANAQHRAFGTEALEKTALYDLHLAHKG
KMVPFAGYELPVLYEVPEWGGIVKEHLHCRAKASVFDVSHMGQIKWHGKD
RVKFLETLVVGDVAGLGVGEARLSLLTNMEGGIIDDTIITNAGDFTYMIV
NGATKTGDMKHFNERMKNFGGDVCFEYFHEQQLLALQGPSAAAVLQALLP
SDLDLKKVNFMTGFDTTVGGLKARVTRCGYTGEDGFEVSVGWKDATALAD
LFLKSPEVRLSGLGARDSLRLESGLCLYGNDIDATTTPVEAALGWTMGGP
KGRRRKEQGFLGAEKFLTPEGKFLPITRKRVGLVGFKAPARAHTEIFDVS
GGSKIGEVTSGTFSPSLGKPIAMGYVATEHAKEGTKVAVKVRGKLQEAEI
TKMPFVTQHYYKAT*

mRNA from alignment at scaffold_6:780554..782462+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3616 ID=mRNA_3616|Name=jgi.p|Nanoce1779_2|582793|organism=Nannochloropsis oceanica|type=mRNA|length=1909bp|location=Sequence derived from alignment at scaffold_6:780554..782462+ (Nannochloropsis oceanica)
CAGACTAGCCATGCTTGCATTTGCACGCACTGGTCTGGCTCGTTTAGCGG
GTTCCAGTCGACAAAAGCTAGCCTCTTCTGCCAACGCTCAGCATCGTGCC
TTCGGAACCGAGGTAAGTCATGTGGGGGGAAGGAATAGAAGAAAGGGGAT
GAGCTTGATGATGGCGGCGGTATGATTGTGTGGACTTCGTATGTATGTGG
TGCGGTATAGGATGAAGCACGCGAGGGGAAGCGCAAGTGGCGGAGGGGAA
GCCTATGAAGAAGGCCTGCCTTTGCAGCTGCACCCCCGAGCACAAGTAGG
AAGTCAACAAGGATTTAGCAGGGTGCCACATGAGGGAAGGAAAGCATGAT
TGCGAGCTCTCACGTAGTGTTTGTAGGCCAACATGCAGTCGGGCGTGTAA
AATCAACCAGGTCGGCGGGGGCGCAAAGACGGGAACGAAGGAAGTTGTGC
TCGTCTCCTGTCCTGATACTCCACTCTCTGACTACACGCTCCCACACTGA
CGGCTTCCCGTCTCCTCCCCTTTCTCATAGGCTTTAGAGAAGACGGCCCT
TTACGACCTGCACCTGGCACACAAGGGCAAGATGGTCCCGTTCGCTGGGT
ACGAGCTCCCAGTCCTCTACGAGGTGCCAGAATGGGGAGGGATTGTGAAA
GAGCACCTGCATTGCCGTGCCAAAGCGTCGGTTTTTGATGTCTCGCACAT
GGGCCAGATCAAATGGCATGGGAAAGATAGGGTTAAGTTTTTGGAGACGT
TGGTGGTGGGCGATGTGGCGGGATTGGGCGTTGGGGAGGCGAGATTAAGT
TTGTTGACCAACATGGAAGGGGGGATCATTGATGATACGATCATTACGAA
TGCTGGGGACTTCACTTATATGATTGTTAATGGCGCAACCAAGACAGGTG
ATATGAAGCATTTTAACGAGAGGATGAAGAATTTTGGAGGGGATGTGTGT
TTTGAGTATTTCCATGAGCAACAGCTCCTGGCGCTACAAGGCCCATCGGC
GGCTGCTGTCTTGCAAGCCCTCCTCCCCTCGGACCTGGATTTGAAAAAGG
TGAATTTTATGACGGGCTTCGATACCACTGTGGGAGGGCTGAAGGCGAGG
GTGACAAGGTGTGGATATACGGGGGAAGATGGGTTCGAGGTGTCGGTGGG
GTGGAAGGATGCCACGGCGTTGGCGGACTTGTTTTTGAAGAGCCCGGAGG
TGAGGTTGTCGGGTTTGGGGGCACGAGATTCCCTGCGGCTGGAATCGGGC
TTGTGTTTGTATGGGAATGATATTGACGCCACCACCACCCCGGTGGAGGC
GGCGTTGGGCTGGACGATGGGTGGCCCGAAGGGGAGGCGTAGGAAGGAGC
AGGGGTTTTTAGGGGCGGAGAAGTTTCTGACTCCTGAGGGGAAGTTTTTG
CCAATCACGAGAAAGAGGGTGGGGTTGGTGGGGTTTAAAGCACCTGCCAG
GGCACATACAGAGATTTTTGATGTGTCGGGAGGGTCGAAGATTGGGGAGG
TGACAAGTGGGACGTTTAGCCCGTCGTTGGGGAAGCCGATTGCGATGGGT
TATGTGGCCACGGAACATGCGAAAGAAGGGACCAAGGTGGCGGTAAAGGT
GAGGGGGAAATTGCAGGAGGCGGAGATTACCAAAATGCCGTTTGTGACGC
AGCATTATTACAAGGCCACCTGAAAAGAGGTGAAAGACTGGTAGGAGGAA
AGGGAGGGGAGGTTGGACGGGGGGCGGGAGGAGGTGAAACAGTTGTGCGA
CATGGTGTTCATGAGTAGCGCGTGATGGTGCATAGTGTGTGAGTGTAAGG
GATGGCCACGTCAGTACCGAATCCGTATAGAACTTTGGAAAGAAACCCCC
AAAATAAAGCTGGAGTCAAGCTCGATCCGTCATATTTGTACTAGCCATGT
TCGCCAGCT

Coding sequence (CDS) from alignment at scaffold_6:780554..782462+

>mRNA_3616 ID=mRNA_3616|Name=jgi.p|Nanoce1779_2|582793|organism=Nannochloropsis oceanica|type=CDS|length=2490bp|location=Sequence derived from alignment at scaffold_6:780554..782462+ (Nannochloropsis oceanica)
ATGCTTGCATTTGCACGCACTGGTCTGGCTCGTTTAGCGGGTTCCAGTCG
ACAAAAGCTAGCCTCTTCTGCCAACGCTCAGCATCGTGCCTTCGGAACCG
AGGCTTTAGAGAAGACGGCCCTTTACGACCTGCACCTGGCACACAAGGGC
AAGATGGTCCCGTTCGCTGGGTACGAGCTCCCAGTCCTCTACGAGGTGCC
AGAATGGGGAGGGATTGTGAAAGAGCACCTGCATTGCCGTGCCAAAGCGT
CGGTTTTTGATGTCTCGCACATGGGCCAGATCAAATGGCATGGGAAAGAT
AGGGTTAAGTTTTTGGAGACGTTGGTGGTGGGCGATGTGGCGGGATTGGG
CGTTGGGGAGGCGAGATTAAGTTTGTTGACCAACATGGAAGGGGGGATCA
TTGATGATACGATCATTACGAATGCTGGGGACTTCACTTATATGATTGTT
AATGGCGCAACCAAGACAGGTGATATGAAGCATTTTAACGAGAGGATGAA
GAATTTTGGAGGGGATGTGTGTTTTGAGTATTTCCATGAGCAACAGCTCC
TGGCGCTACAAGGCCCATCGGCGGCTGCTGTCTTGCAAGCCCTCCTCCCC
TCGGACCTGGATTTGAAAAAGGTGAATTTTATGACGGGCTTCGATACCAC
TGTGGGAGGGCTGAAGGCGAGGGTGACAAGGTGTGGATATACGGGGGAAG
ATGGGTTCGAGGTGTCGGTGGGGTGGAAGGATGCCACGGCGTTGGCGGAC
TTGTTTTTGAAGAGCCCGGAGGTGAGGTTGTCGGGTTTGGGGGCACGAGA
TTCCCTGCGGCTGGAATCGGGCTTGTGTTTGTATGGGAATGATATTGACG
CCACCACCACCCCGGTGGAGGCGGCGTTGGGCTGGACGATGGGTGGCCCG
AAGGGGAGGCGTAGGAAGGAGCAGGGGTTTTTAGGGGCGGAGAAGTTTCT
GACTCCTGAGGGGAAGTTTTTGCCAATCACGAGAAAGAGGGTGGGGTTGG
TGGGGTTTAAAGCACCTGCCAGGGCACATACAGAGATTTTTGATGTGTCG
GGAGGGTCGAAGATTGGGGAGGTGACAAGTGGGACGTTTAGCCCGTCGTT
GGGGAAGCCGATTGCGATGGGTTATGTGGCCACGGAACATGCGAAAGAAG
GGACCAAGGTGGCGGTAAAGGTGAGGGGGAAATTGCAGGAGGCGGAGATT
ACCAAAATGCCGTTTGTGACGCAGCATTATTACAAGGCCACCTGAATGCT
TGCATTTGCACGCACTGGTCTGGCTCGTTTAGCGGGTTCCAGTCGACAAA
AGCTAGCCTCTTCTGCCAACGCTCAGCATCGTGCCTTCGGAACCGAGGCT
TTAGAGAAGACGGCCCTTTACGACCTGCACCTGGCACACAAGGGCAAGAT
GGTCCCGTTCGCTGGGTACGAGCTCCCAGTCCTCTACGAGGTGCCAGAAT
GGGGAGGGATTGTGAAAGAGCACCTGCATTGCCGTGCCAAAGCGTCGGTT
TTTGATGTCTCGCACATGGGCCAGATCAAATGGCATGGGAAAGATAGGGT
TAAGTTTTTGGAGACGTTGGTGGTGGGCGATGTGGCGGGATTGGGCGTTG
GGGAGGCGAGATTAAGTTTGTTGACCAACATGGAAGGGGGGATCATTGAT
GATACGATCATTACGAATGCTGGGGACTTCACTTATATGATTGTTAATGG
CGCAACCAAGACAGGTGATATGAAGCATTTTAACGAGAGGATGAAGAATT
TTGGAGGGGATGTGTGTTTTGAGTATTTCCATGAGCAACAGCTCCTGGCG
CTACAAGGCCCATCGGCGGCTGCTGTCTTGCAAGCCCTCCTCCCCTCGGA
CCTGGATTTGAAAAAGGTGAATTTTATGACGGGCTTCGATACCACTGTGG
GAGGGCTGAAGGCGAGGGTGACAAGGTGTGGATATACGGGGGAAGATGGG
TTCGAGGTGTCGGTGGGGTGGAAGGATGCCACGGCGTTGGCGGACTTGTT
TTTGAAGAGCCCGGAGGTGAGGTTGTCGGGTTTGGGGGCACGAGATTCCC
TGCGGCTGGAATCGGGCTTGTGTTTGTATGGGAATGATATTGACGCCACC
ACCACCCCGGTGGAGGCGGCGTTGGGCTGGACGATGGGTGGCCCGAAGGG
GAGGCGTAGGAAGGAGCAGGGGTTTTTAGGGGCGGAGAAGTTTCTGACTC
CTGAGGGGAAGTTTTTGCCAATCACGAGAAAGAGGGTGGGGTTGGTGGGG
TTTAAAGCACCTGCCAGGGCACATACAGAGATTTTTGATGTGTCGGGAGG
GTCGAAGATTGGGGAGGTGACAAGTGGGACGTTTAGCCCGTCGTTGGGGA
AGCCGATTGCGATGGGTTATGTGGCCACGGAACATGCGAAAGAAGGGACC
AAGGTGGCGGTAAAGGTGAGGGGGAAATTGCAGGAGGCGGAGATTACCAA
AATGCCGTTTGTGACGCAGCATTATTACAAGGCCACCTGA

Synonyms

Publications