jgi.p|Nanoce1779_2|582791, mRNA_3615 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582791
Unique Name	mRNA_3615
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1932
Alignment location	scaffold_6:778681..780612 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582877
Track	FilteredModels2
ProteinId	582791

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:778681..780612 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582791	gene_3615	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582791	mRNA_3615-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3615	CDS_3615	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:778681..780612-
coding sequence from alignment at scaffold_6:778681..780612-

mRNA sequence

>mRNA_3615 ID=mRNA_3615|Name=jgi.p|Nanoce1779_2|582791|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
GACTGGAACCCGCTAAACGAGCCAGACCAGTGCGTGCAAATGCAAGCATG
GCTAGTCTGGGTTGTAATTGTGGTGGTGGACGTCGTGGAAGAAGTATCAG
TGCGTGTGAAAAGGGGCCTCCGGATTCGACTTTGGCAAGTGCACTGATGA
TGGATCGCTGTTGTTTGCTTCAAGTCCAAATCTCCTCTGCCCCGAACGTC
TAGCTCTACGTCCTGGTCACCATCAGTATCGACCTCCTAATTATTGCCTT
CAAGGGACATTTATGATCCGATAGCGCTCATTTCCCCCGCCATTCCGACA
CTAGAACGCAGCAAGCTGTCTATCGCCCACACCGCTTCGTCTAATTCTTC
GCAAGTCCTTCCGTTCCCCATTCCAAGCTTCATTTCGACTAACGCCACCG
CCACGCCGGCAGCACGGCCATTTCATCGTCCACTACCCGCATCAGAAATT
TCGTGGCGCCGGCATGCAAAGCCCACCCTCGCTTCTCCTCCTCCCTCTCC
TCCTTATCCCTCTCCTCCAACACCGCCAGATCAACGCCTTCCCCTTTGGC
GGTGGACTGAACGTGGGCAAGATTCTGGGACCCGGCACAGCTGGAGCATG
GGATGACTACAAGGTGTCGGGTCCCATTGTGCGGCAAGCGCCGGCCGGTA
CCTGGAATATGTGGTACTATGGCCGATCGAAAGCCTTCAACCAAACCGCC
GACCTGATCAACCTCCCCTCGGGACACATTGGCTTGGCGAAATCCAAGGA
TGGCTTGCGTGATTTCGCGCGGGTCAAAGGTCTCCTGTTAGATGGAGCTG
TATTTGGTCCTAGCAGCAGCAATAGCTTCGATTCTCTGCACGTAGGCATC
GGAGACGTCCAATGGGACGCGCAGTTGAAGAAATGGGTCATGTACTACTT
CGGTGGCGACGGCGAGTATGGCCCTACTCCCTACGGACAAGCCCGAGGGA
TCTACATGAAAATCGGTAAGGCCGAAAGCTCCGACGGTGTGAGCTGGACA
CGGACCCCCGGTGTGCTCCTTGATAAAGGCGCGCCTGGTGAGTTCGATGC
CCTCTTCGTCGGTTGGCCTCAAGTCGTGGATCTGGAGAAAGACAGTGTCC
TACCGGGTGCAAAGCTCGGTATGTTTTATCATACCTTTAATACAGCAACC
TTCGGATTTGAAATCGGGCTTGCCACGTCCGCCGACTCCAAGGGTGAGAA
ATGGACTAAGCGTGGCCCTCTTCAATTACCCCGAGGGCCTCCCGGCACGC
TACGCGATTTGGGACATGCCACCCGCTGTGTTATTTCTGACCCGGTTAGG
AGAAAGAAATTACTGATGTTTGCGGAGTGTGCGAATACGCAGAACAGTAA
TTGTATTGCTGTGTATGGTTCGGATGATGGTATGCATTGGGAAGACATGC
ACCCAGATGGCAAGCCTGTCTTTGTCGGGGCTGGGAAAGGGACAGGGAGG
TGGGATGCTCAGGCGTTGGGTTGTCCGAGTGTAAGTGTGAGAGATGGATG
TTTTTATATGTATTATGTGGGCTTTGCTGAGAGTACTTCGGAGGGTGCAG
CGCTTGGGTGCATTGGCTTGGCGATCAGTGAGGGGATGGACTTTACAAAG
TGGAAGAGGATGGGAGAGTAGGTTCTGGGTTGAGGCCGGGAGGGCGGGAA
CCGTGGAGGGCAGTGGGAGAGTGGTCAAATGCTAGGTGGCATGTTTGCTA
TGTATAATTAGAAATATCAAGGCAGAAATGGTTGTAGAAGCAAGTGTTAT
GGAATGAAGTTTGATAAACGTTTGTTTGACTTGACAAGGTTCATTTTCCA
CACCTATTTGTATCTTGACCTCGCTTTTGCATGCTTTTTGGGTGGTCACT
TCCCCTTTCCTGGCTAAACGTTCACCGTATCCTAGCACAAAAGCTATCTT
CATCAGAAACCAAAGTCATTGATCACCCCGGT

protein sequence of jgi.p|Nanoce1779_2|582791

>mRNA_3615-protein ID=mRNA_3615-protein|Name=jgi.p|Nanoce1779_2|582791|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MQSPPSLLLLPLLLIPLLQHRQINAFPFGGGLNVGKILGPGTAGAWDDYK
VSGPIVRQAPAGTWNMWYYGRSKAFNQTADLINLPSGHIGLAKSKDGLRD
FARVKGLLLDGAVFGPSSSNSFDSLHVGIGDVQWDAQLKKWVMYYFGGDG
EYGPTPYGQARGIYMKIGKAESSDGVSWTRTPGVLLDKGAPGEFDALFVG
WPQVVDLEKDSVLPGAKLGMFYHTFNTATFGFEIGLATSADSKGEKWTKR
GPLQLPRGPPGTLRDLGHATRCVISDPVRRKKLLMFAECANTQNSNCIAV
YGSDDGMHWEDMHPDGKPVFVGAGKGTGRWDAQALGCPSVSVRDGCFYMY
YVGFAESTSEGAALGCIGLAISEGMDFTKWKRMGE*

mRNA from alignment at scaffold_6:778681..780612-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3615 ID=mRNA_3615|Name=jgi.p|Nanoce1779_2|582791|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp|location=Sequence derived from alignment at scaffold_6:778681..780612- (Nannochloropsis oceanica)
GACTGGAACCCGCTAAACGAGCCAGACCAGTGCGTGCAAATGCAAGCATG
GCTAGTCTGGGTTGTAATTGTGGTGGTGGACGTCGTGGAAGAAGTATCAG
TGCGTGTGAAAAGGGGCCTCCGGATTCGACTTTGGCAAGTGCACTGATGA
TGGATCGCTGTTGTTTGCTTCAAGTCCAAATCTCCTCTGCCCCGAACGTC
TAGCTCTACGTCCTGGTCACCATCAGTATCGACCTCCTAATTATTGCCTT
CAAGGGACATTTATGATCCGATAGCGCTCATTTCCCCCGCCATTCCGACA
CTAGAACGCAGCAAGCTGTCTATCGCCCACACCGCTTCGTCTAATTCTTC
GCAAGTCCTTCCGTTCCCCATTCCAAGCTTCATTTCGACTAACGCCACCG
CCACGCCGGCAGCACGGCCATTTCATCGTCCACTACCCGCATCAGAAATT
TCGTGGCGCCGGCATGCAAAGCCCACCCTCGCTTCTCCTCCTCCCTCTCC
TCCTTATCCCTCTCCTCCAACACCGCCAGATCAACGCCTTCCCCTTTGGC
GGTGGACTGAACGTGGGCAAGATTCTGGGACCCGGCACAGCTGGAGCATG
GGATGACTACAAGGTGTCGGGTCCCATTGTGCGGCAAGCGCCGGCCGGTA
CCTGGAATATGTGGTACTATGGCCGATCGAAAGCCTTCAACCAAACCGCC
GACCTGATCAACCTCCCCTCGGGACACATTGGCTTGGCGAAATCCAAGGA
TGGCTTGCGTGATTTCGCGCGGGTCAAAGGTCTCCTGTTAGATGGAGCTG
TATTTGGTCCTAGCAGCAGCAATAGCTTCGATTCTCTGCACGTAGGCATC
GGAGACGTCCAATGGGACGCGCAGTTGAAGAAATGGGTCATGTACTACTT
CGGTGGCGACGGCGAGTATGGCCCTACTCCCTACGGACAAGCCCGAGGGA
TCTACATGAAAATCGGTAAGGCCGAAAGCTCCGACGGTGTGAGCTGGACA
CGGACCCCCGGTGTGCTCCTTGATAAAGGCGCGCCTGGTGAGTTCGATGC
CCTCTTCGTCGGTTGGCCTCAAGTCGTGGATCTGGAGAAAGACAGTGTCC
TACCGGGTGCAAAGCTCGGTATGTTTTATCATACCTTTAATACAGCAACC
TTCGGATTTGAAATCGGGCTTGCCACGTCCGCCGACTCCAAGGGTGAGAA
ATGGACTAAGCGTGGCCCTCTTCAATTACCCCGAGGGCCTCCCGGCACGC
TACGCGATTTGGGACATGCCACCCGCTGTGTTATTTCTGACCCGGTTAGG
AGAAAGAAATTACTGATGTTTGCGGAGTGTGCGAATACGCAGAACAGTAA
TTGTATTGCTGTGTATGGTTCGGATGATGGTATGCATTGGGAAGACATGC
ACCCAGATGGCAAGCCTGTCTTTGTCGGGGCTGGGAAAGGGACAGGGAGG
TGGGATGCTCAGGCGTTGGGTTGTCCGAGTGTAAGTGTGAGAGATGGATG
TTTTTATATGTATTATGTGGGCTTTGCTGAGAGTACTTCGGAGGGTGCAG
CGCTTGGGTGCATTGGCTTGGCGATCAGTGAGGGGATGGACTTTACAAAG
TGGAAGAGGATGGGAGAGTAGGTTCTGGGTTGAGGCCGGGAGGGCGGGAA
CCGTGGAGGGCAGTGGGAGAGTGGTCAAATGCTAGGTGGCATGTTTGCTA
TGTATAATTAGAAATATCAAGGCAGAAATGGTTGTAGAAGCAAGTGTTAT
GGAATGAAGTTTGATAAACGTTTGTTTGACTTGACAAGGTTCATTTTCCA
CACCTATTTGTATCTTGACCTCGCTTTTGCATGCTTTTTGGGTGGTCACT
TCCCCTTTCCTGGCTAAACGTTCACCGTATCCTAGCACAAAAGCTATCTT
CATCAGAAACCAAAGTCATTGATCACCCCGGT

Coding sequence (CDS) from alignment at scaffold_6:778681..780612-

>mRNA_3615 ID=mRNA_3615|Name=jgi.p|Nanoce1779_2|582791|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_6:778681..780612- (Nannochloropsis oceanica)
ATGCAAAGCCCACCCTCGCTTCTCCTCCTCCCTCTCCTCCTTATCCCTCT
CCTCCAACACCGCCAGATCAACGCCTTCCCCTTTGGCGGTGGACTGAACG
TGGGCAAGATTCTGGGACCCGGCACAGCTGGAGCATGGGATGACTACAAG
GTGTCGGGTCCCATTGTGCGGCAAGCGCCGGCCGGTACCTGGAATATGTG
GTACTATGGCCGATCGAAAGCCTTCAACCAAACCGCCGACCTGATCAACC
TCCCCTCGGGACACATTGGCTTGGCGAAATCCAAGGATGGCTTGCGTGAT
TTCGCGCGGGTCAAAGGTCTCCTGTTAGATGGAGCTGTATTTGGTCCTAG
CAGCAGCAATAGCTTCGATTCTCTGCACGTAGGCATCGGAGACGTCCAAT
GGGACGCGCAGTTGAAGAAATGGGTCATGTACTACTTCGGTGGCGACGGC
GAGTATGGCCCTACTCCCTACGGACAAGCCCGAGGGATCTACATGAAAAT
CGGTAAGGCCGAAAGCTCCGACGGTGTGAGCTGGACACGGACCCCCGGTG
TGCTCCTTGATAAAGGCGCGCCTGGTGAGTTCGATGCCCTCTTCGTCGGT
TGGCCTCAAGTCGTGGATCTGGAGAAAGACAGTGTCCTACCGGGTGCAAA
GCTCGGTATGTTTTATCATACCTTTAATACAGCAACCTTCGGATTTGAAA
TCGGGCTTGCCACGTCCGCCGACTCCAAGGGTGAGAAATGGACTAAGCGT
GGCCCTCTTCAATTACCCCGAGGGCCTCCCGGCACGCTACGCGATTTGGG
ACATGCCACCCGCTGTGTTATTTCTGACCCGGTTAGGAGAAAGAAATTAC
TGATGTTTGCGGAGTGTGCGAATACGCAGAACAGTAATTGTATTGCTGTG
TATGGTTCGGATGATGGTATGCATTGGGAAGACATGCACCCAGATGGCAA
GCCTGTCTTTGTCGGGGCTGGGAAAGGGACAGGGAGGTGGGATGCTCAGG
CGTTGGGTTGTCCGAGTGTAAGTGTGAGAGATGGATGTTTTTATATGTAT
TATGTGGGCTTTGCTGAGAGTACTTCGGAGGGTGCAGCGCTTGGGTGCAT
TGGCTTGGCGATCAGTGAGGGGATGGACTTTACAAAGTGGAAGAGGATGG
GAGAGTAG

Synonyms

Publications