jgi.p|Nanoce1779_2|582784, mRNA_3613 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582784
Unique NamemRNA_3613
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1322
Alignment locationscaffold_6:773322..774643 -

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Properties
Property NameValue
TranscriptId582870
TrackFilteredModels2
ProteinId582784
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:773322..774643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582784gene_3613Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582784mRNA_3613-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3613CDS_3613Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3613 ID=mRNA_3613|Name=jgi.p|Nanoce1779_2|582784|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp
TGACGAACGATGAAGAAACGAAAGTCGGCGAAAGGGCGAGAGGCCACCAC
GTCCCACCATCACACACGTATTCCCTAGCCTGACCTACGTAGCATTTTTT
GACCCTAATCTGCAGCATCCTATCATCATAAAGCCCCTACGCCCCGTCCA
CCATGACGAACCCTACCGGCGCGACTCCAGCCAAGAAGCCGTGCCTCGAG
CACCAGCCGTCAAATAATACCAAGGCGGTAATCGCCTCGGACATACCCTT
GGCAGCCGCCGGCCCCGTCATCGGCACGCACGATGGTACATTTCACTGCG
ACGAAGTCTTGGCCATCTCCATGCTCCGTCTCCTGCCCGCCTACAAAGAG
TCGGTGGTGGTCAGGACGCGCGACCCCACGAAGCTTGCCCAGTGTCAAAT
CGTCGTGGACGTCGGGGCTGAGTACGACGCCAGCGGCCTCCGATTCGATC
ATCACCAGCGGGGATTTGAGCATACGTTGGGGGATAAATTTAAGACCAAG
CTGTCGAGTGCCGGCCTCGTCTACAAGCATTTCGGACGGGACATGCTCCG
GGTCATGGTGGTCTCCTCGGGGGCGGCAGCGACCTTTAATACGGAAGAGG
GCGTGAAAGAAGAGGACCTGATGCTGGACAAGCTGTACATCAAGACGTAC
CTAGACTTTGTGGAGCATATTGATGGGATTGACAACGGCATCAACATCGC
GGAGGGCAATCTCCGGTATACGGTCCAGACGCACTTGCCCGGTCGCGTCG
CCACTCTGAACCCGGCCTGGAATGAAGACGATTCCGCTAACGCATTGAAC
GAGAGGTTTGCCGACGCCTTGGCTATGGTCAGTACGGAGTTTATCAATTT
TGTTGGATATCTATGTAAGTCTTGGTGGCCGGCTCGGCAGCGTGTGGCCG
AGGGGTTTCAGGGTCGTTTCACGGTTCATCCGAGTGGCAAGATTCTGCAT
TTGATGACGTACTGTCCTTGGCAAGACCATTTATTTGACCTAGAACTAGA
CGCAGGCGTGCCGGGACAGGTTCTGTACGTTTTGTATGCCGACTCCAAGG
GCAGCTCGGTGAGAATACATGCTGTTCCTGACAGGGTGGGGTCGTTTGCT
CTGCGGTTGGCAATGCCCGAGGCTTGGCGAGGTTTAAGAAACGAGGTCTT
GGGAGCAGCTGTGGGTGGGATTCCGGGTTGTATTTTCGTTCATGCCAATG
GCTTCATTGGAGGAAATGCGACATTGGAGGGGGCGATGGAGATGGCCAAG
TTGGCGTTGACTTATGTGGTTTAGTGATGAATGGGGACGGTGCCAAAAAC
AAACGTAGCACATATAACGACA
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protein sequence of jgi.p|Nanoce1779_2|582784

>mRNA_3613-protein ID=mRNA_3613-protein|Name=jgi.p|Nanoce1779_2|582784|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MTNPTGATPAKKPCLEHQPSNNTKAVIASDIPLAAAGPVIGTHDGTFHCD
EVLAISMLRLLPAYKESVVVRTRDPTKLAQCQIVVDVGAEYDASGLRFDH
HQRGFEHTLGDKFKTKLSSAGLVYKHFGRDMLRVMVVSSGAAATFNTEEG
VKEEDLMLDKLYIKTYLDFVEHIDGIDNGINIAEGNLRYTVQTHLPGRVA
TLNPAWNEDDSANALNERFADALAMVSTEFINFVGYLCKSWWPARQRVAE
GFQGRFTVHPSGKILHLMTYCPWQDHLFDLELDAGVPGQVLYVLYADSKG
SSVRIHAVPDRVGSFALRLAMPEAWRGLRNEVLGAAVGGIPGCIFVHANG
FIGGNATLEGAMEMAKLALTYVV*
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mRNA from alignment at scaffold_6:773322..774643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3613 ID=mRNA_3613|Name=jgi.p|Nanoce1779_2|582784|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp|location=Sequence derived from alignment at scaffold_6:773322..774643- (Nannochloropsis oceanica)
TGACGAACGATGAAGAAACGAAAGTCGGCGAAAGGGCGAGAGGCCACCAC
GTCCCACCATCACACACGTATTCCCTAGCCTGACCTACGTAGCATTTTTT
GACCCTAATCTGCAGCATCCTATCATCATAAAGCCCCTACGCCCCGTCCA
CCATGACGAACCCTACCGGCGCGACTCCAGCCAAGAAGCCGTGCCTCGAG
CACCAGCCGTCAAATAATACCAAGGCGGTAATCGCCTCGGACATACCCTT
GGCAGCCGCCGGCCCCGTCATCGGCACGCACGATGGTACATTTCACTGCG
ACGAAGTCTTGGCCATCTCCATGCTCCGTCTCCTGCCCGCCTACAAAGAG
TCGGTGGTGGTCAGGACGCGCGACCCCACGAAGCTTGCCCAGTGTCAAAT
CGTCGTGGACGTCGGGGCTGAGTACGACGCCAGCGGCCTCCGATTCGATC
ATCACCAGCGGGGATTTGAGCATACGTTGGGGGATAAATTTAAGACCAAG
CTGTCGAGTGCCGGCCTCGTCTACAAGCATTTCGGACGGGACATGCTCCG
GGTCATGGTGGTCTCCTCGGGGGCGGCAGCGACCTTTAATACGGAAGAGG
GCGTGAAAGAAGAGGACCTGATGCTGGACAAGCTGTACATCAAGACGTAC
CTAGACTTTGTGGAGCATATTGATGGGATTGACAACGGCATCAACATCGC
GGAGGGCAATCTCCGGTATACGGTCCAGACGCACTTGCCCGGTCGCGTCG
CCACTCTGAACCCGGCCTGGAATGAAGACGATTCCGCTAACGCATTGAAC
GAGAGGTTTGCCGACGCCTTGGCTATGGTCAGTACGGAGTTTATCAATTT
TGTTGGATATCTATGTAAGTCTTGGTGGCCGGCTCGGCAGCGTGTGGCCG
AGGGGTTTCAGGGTCGTTTCACGGTTCATCCGAGTGGCAAGATTCTGCAT
TTGATGACGTACTGTCCTTGGCAAGACCATTTATTTGACCTAGAACTAGA
CGCAGGCGTGCCGGGACAGGTTCTGTACGTTTTGTATGCCGACTCCAAGG
GCAGCTCGGTGAGAATACATGCTGTTCCTGACAGGGTGGGGTCGTTTGCT
CTGCGGTTGGCAATGCCCGAGGCTTGGCGAGGTTTAAGAAACGAGGTCTT
GGGAGCAGCTGTGGGTGGGATTCCGGGTTGTATTTTCGTTCATGCCAATG
GCTTCATTGGAGGAAATGCGACATTGGAGGGGGCGATGGAGATGGCCAAG
TTGGCGTTGACTTATGTGGTTTAGTGATGAATGGGGACGGTGCCAAAAAC
AAACGTAGCACATATAACGACA
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Coding sequence (CDS) from alignment at scaffold_6:773322..774643-

>mRNA_3613 ID=mRNA_3613|Name=jgi.p|Nanoce1779_2|582784|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_6:773322..774643- (Nannochloropsis oceanica)
ATGACGAACCCTACCGGCGCGACTCCAGCCAAGAAGCCGTGCCTCGAGCA
CCAGCCGTCAAATAATACCAAGGCGGTAATCGCCTCGGACATACCCTTGG
CAGCCGCCGGCCCCGTCATCGGCACGCACGATGGTACATTTCACTGCGAC
GAAGTCTTGGCCATCTCCATGCTCCGTCTCCTGCCCGCCTACAAAGAGTC
GGTGGTGGTCAGGACGCGCGACCCCACGAAGCTTGCCCAGTGTCAAATCG
TCGTGGACGTCGGGGCTGAGTACGACGCCAGCGGCCTCCGATTCGATCAT
CACCAGCGGGGATTTGAGCATACGTTGGGGGATAAATTTAAGACCAAGCT
GTCGAGTGCCGGCCTCGTCTACAAGCATTTCGGACGGGACATGCTCCGGG
TCATGGTGGTCTCCTCGGGGGCGGCAGCGACCTTTAATACGGAAGAGGGC
GTGAAAGAAGAGGACCTGATGCTGGACAAGCTGTACATCAAGACGTACCT
AGACTTTGTGGAGCATATTGATGGGATTGACAACGGCATCAACATCGCGG
AGGGCAATCTCCGGTATACGGTCCAGACGCACTTGCCCGGTCGCGTCGCC
ACTCTGAACCCGGCCTGGAATGAAGACGATTCCGCTAACGCATTGAACGA
GAGGTTTGCCGACGCCTTGGCTATGGTCAGTACGGAGTTTATCAATTTTG
TTGGATATCTATGTAAGTCTTGGTGGCCGGCTCGGCAGCGTGTGGCCGAG
GGGTTTCAGGGTCGTTTCACGGTTCATCCGAGTGGCAAGATTCTGCATTT
GATGACGTACTGTCCTTGGCAAGACCATTTATTTGACCTAGAACTAGACG
CAGGCGTGCCGGGACAGGTTCTGTACGTTTTGTATGCCGACTCCAAGGGC
AGCTCGGTGAGAATACATGCTGTTCCTGACAGGGTGGGGTCGTTTGCTCT
GCGGTTGGCAATGCCCGAGGCTTGGCGAGGTTTAAGAAACGAGGTCTTGG
GAGCAGCTGTGGGTGGGATTCCGGGTTGTATTTTCGTTCATGCCAATGGC
TTCATTGGAGGAAATGCGACATTGGAGGGGGCGATGGAGATGGCCAAGTT
GGCGTTGACTTATGTGGTTTAG
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Synonyms
Publications