jgi.p|Nanoce1779_2|663283, mRNA_3610 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|663283
Unique NamemRNA_3610
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length485
Alignment locationscaffold_6:764806..765290 +

Link to JBrowse

Properties
Property NameValue
TranscriptId663369
TrackFilteredModels2
ProteinId663283
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:764806..765290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|663283gene_3610Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|663283mRNA_3610-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3610CDS_3610Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3610 ID=mRNA_3610|Name=jgi.p|Nanoce1779_2|663283|organism=Nannochloropsis oceanica|type=mRNA|length=485bp
ATGAAGGCGTTAGCTGCTTTGCCGAATGTGTACGTGAAGTTGTCGATGTT
GGAATACATGCGTTCAGGGTGGCAGCACAAAGAGACGGGAATAGCGACGG
CAGAGGTAATGTCAAGCGAGATCAGTGCCGCTGGGAACGATGTGGAGAAG
GAAATAAGCGAGGGCAGCAGCAGCACCACCAATGCTAATACTGTTGTGAA
GGCGCGTGTCCGAGAAGTTATTGAGTGGTTTGGGTCCGAGCGGTGTATGT
TCGCGAGTAACTTCCCAGTGGATAAGTGTCTGTTGGGTGGTGACGCTCAG
CCGACCACGCTTGAGGCGTTGGTGCTGGCGCAGCATGCGTTGGTAAGTGA
CTTGCCGGAGGAGCAGACACTGCAACTGTTTTCAGAGACGGCCAAGAAGG
TATATAAGCTCAAATAGGAGGAGAACGCGAAGAAAGCAGGAGTGCATAAA
AGGAGGGAAGGGAAAACGGGGGGAAACAGCAATCA
back to top

protein sequence of jgi.p|Nanoce1779_2|663283

>mRNA_3610-protein ID=mRNA_3610-protein|Name=jgi.p|Nanoce1779_2|663283|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MKALAALPNVYVKLSMLEYMRSGWQHKETGIATAEVMSSEISAAGNDVEK
EISEGSSSTTNANTVVKARVREVIEWFGSERCMFASNFPVDKCLLGGDAQ
PTTLEALVLAQHALVSDLPEEQTLQLFSETAKKVYKLK*
back to top

mRNA from alignment at scaffold_6:764806..765290+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3610 ID=mRNA_3610|Name=jgi.p|Nanoce1779_2|663283|organism=Nannochloropsis oceanica|type=mRNA|length=485bp|location=Sequence derived from alignment at scaffold_6:764806..765290+ (Nannochloropsis oceanica)
ATGAAGGCGTTAGCTGCTTTGCCGAATGTGTACGTGAAGTTGTCGATGTT
GGAATACATGCGTTCAGGGTGGCAGCACAAAGAGACGGGAATAGCGACGG
CAGAGGTAATGTCAAGCGAGATCAGTGCCGCTGGGAACGATGTGGAGAAG
GAAATAAGCGAGGGCAGCAGCAGCACCACCAATGCTAATACTGTTGTGAA
GGCGCGTGTCCGAGAAGTTATTGAGTGGTTTGGGTCCGAGCGGTGTATGT
TCGCGAGTAACTTCCCAGTGGATAAGTGTCTGTTGGGTGGTGACGCTCAG
CCGACCACGCTTGAGGCGTTGGTGCTGGCGCAGCATGCGTTGGTAAGTGA
CTTGCCGGAGGAGCAGACACTGCAACTGTTTTCAGAGACGGCCAAGAAGG
TATATAAGCTCAAATAGGAGGAGAACGCGAAGAAAGCAGGAGTGCATAAA
AGGAGGGAAGGGAAAACGGGGGGAAACAGCAATCA
back to top

Coding sequence (CDS) from alignment at scaffold_6:764806..765290+

>mRNA_3610 ID=mRNA_3610|Name=jgi.p|Nanoce1779_2|663283|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_6:764806..765290+ (Nannochloropsis oceanica)
ATGAAGGCGTTAGCTGCTTTGCCGAATGTGTACGTGAAGTTGTCGATGTT
GGAATACATGCGTTCAGGGTGGCAGCACAAAGAGACGGGAATAGCGACGG
CAGAGGTAATGTCAAGCGAGATCAGTGCCGCTGGGAACGATGTGGAGAAG
GAAATAAGCGAGGGCAGCAGCAGCACCACCAATGCTAATACTGTTGTGAA
GGCGCGTGTCCGAGAAGTTATTGAGTGGTTTGGGTCCGAGCGGTGTATGT
TCGCGAGTAACTTCCCAGTGGATAAGTGTCTGTTGGGTGGTGACGCTCAG
CCGACCACGCTTGAGGCGTTGGTGCTGGCGCAGCATGCGTTGGTAAGTGA
CTTGCCGGAGGAGCAGACACTGCAACTGTTTTCAGAGACGGCCAAGAAGG
TATATAAGCTCAAATAG
back to top
Synonyms
Publications