jgi.p|Nanoce1779_2|669552, mRNA_3609 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669552
Unique NamemRNA_3609
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2459
Alignment locationscaffold_6:762964..765422 +

Link to JBrowse

Properties
Property NameValue
TranscriptId669638
TrackFilteredModels2
ProteinId669552
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:762964..765422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669552gene_3609Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669552mRNA_3609-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3609CDS_3609Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3609 ID=mRNA_3609|Name=jgi.p|Nanoce1779_2|669552|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp
AAGTACCTGCAGGCGGAATCGCACGACACAGGGGATCTCGATTAGGTTAC
CGTCTGGGTCGCGGGTCTCGTGGTACATGCTGAGGGAGGGCGGAAGGGAG
GGAGGGAGGGACGTGAGTAGTGCTTTTTTGAGAAGGGTGTGCCACCTCCT
CTCTCCTGTCTCCCCCGCCCTTTTCTCCCTTTCTTCTTATTACCTCAAGT
CCCATGACATCCACATTCCTTGAAGGAACTTGACCATATCAAGCGTTACA
AGCACTTGGAGATGGGGGAGGGTTAGAGGGGGGGAGGAAAGGAGGGAAAG
AAAAGAATGCGTACGTGAGAGCTGTCACTGATTGGGTTTTAAAATGACAC
AACTGAACGCACTGGCATAATCTCGATGCGTACATAGGAGTGAGGGAAAA
GGGTAATGACAACAAGCCAAACAAAGTCATCCCCCATTCATTTTCCCTCC
CCTTCCCCCTCTTCCATCTCCGGACCCCCCCGTTTAAAACTACTCACGGG
ATATCGGCAACATGTTCGAGAATAGCACAGTGTACGTCCAGAACTGAATG
AATCCGGACAAGGCCGGGTCAGGTAATCTGGCGCCCACCCACAGGTAAGG
CATCTGCCCTCCTCTCCCTACATAGATCCCACCCACCACCGCCGCACACA
AACAACACAACACCTGCAATCCAAACACCATCATCTCCCGTAAATTGCTG
CAGGAAAGGAATATCCAATTTTTATCAGAATTAAATCAGCAGGATTCATG
AAGTCATGAGTGAAAGTTTAATGAAAATGTGATTGCGAATGTAATTTCCG
AACAACAACTCAACCTCCTGCCCTCCACTGTGGCAGAATCTGCGGTAACT
TAAACCACAAATAATTTAAAGCTTTAAATTTTGTGACACTCGTTTACTGT
CTACCACGCTTAGGTCTGCGCACCTATGGCTTATGAAGCATAAAGGGGAT
CGGGTTCGGGGTCGGTTGAAGTTTGCCACGTAGTGTTCGGTGCAGCATTA
TTTTCTTCCAGAGGCACAACTGGCGACGCACACACGTACACATCACTCTA
GAACAATCGGGGTGCGACAGCATACCTAACCACAATGCCCTTGAGGAATC
TTTTATGGAGCAACTCAAACCAGACTAAACGCATACTCCCCACATAGCCA
CCACATCAACGACGTCCTCATCCCCAATATGCCAACAACACTACCACCGC
TCCCCATTGTGGATCCTCACTTCCACATTTGGGACGCCAACACGCTTCCC
AACCCCAACCTCGGTGAGCTGACCATGAAAGCGCTGCCCGTTTACAGCTT
CCTGAATTACGAGCAGGACTGTGGCGTGGGGGTGGCGGGCTCCGTTCACA
TCGAAGCCGTCGTTGGTCAGGCCAAGGGTGCTGCAAAAGCGTTAGACCCC
GTCGCAGAGACGCGTTTCGTCCTTGAAAAAGTTGGAGCCGAAGGAGTGAA
GAACGTCAACATTGTAGCGTTTGTAAAGCTCAGTGCCATGCCCGAAGCAC
AGGCCGTCATCGACGCGCACAAACACCTGGCGGCTGAGCGATTCGTTGGC
GTGCGGATGATTTTGAATTATTCTTCCGATGACCCGTCTTTGACCTGGCC
TCAAGTGGAGCGCGGCGATTTCCTCACAGGCGGCGTACCATCGTTCAAGG
AGGGCTTTGCACTGCTTGCCCCGCGGGGGTTATCCTTCGATTTGCAAGTC
AATTGGTTTCAGCTTCAAGACGCTGCAACATTTTTGCAGGCCTTTCCCGA
AACGGTGGTTATTGTTGATCATATGGGTTGCTTGAAATTTGGGGGCTGGA
GATGAAGAGGACGCCAAGCGCATTGCTGTGTGGCAAGAGGGTATGAAGGC
GTTAGCTGCTTTGCCGAATGTGTACGTGAAGTTGTCGATGTTGGAATACA
TGCGTTCAGGGTGGCAGCACAAAGAGACGGGAATAGCGACGGCAGAGGTA
ATGTCAAGCGAGATCAGTGCCGCTGGGAACGATGTGGAGAAGGAAATAAG
CGAGGGCAGCAGCAGCACCACCAATGCTAATACTGTTGTGAAGGCGCGTG
TCCGAGAAGTTATTGAGTGGTTTGGGTCCGAGCGGTGTATGTTCGCGAGT
AACTTCCCAGTGGATAAGTGTCTGTTGGGTGGTGACGCTCAGCCGACCAC
GCTTGAGGCGTTGGTGCTGGCGCAGCATGCGTTGGTAAGTGACTTGCCGG
AGGAGCAGACACTGCAACTGTTTTCAGAGACGGCCAAGAAGGTATATAAG
CTCAAATAGGAGGAGAACGCGAAGAAAGCAGGAGTGCATAAAAGGAGGGA
AGGGAAAACGGGGGGAAACAGCAATCAGAAAAAGTTAAAAATAAGCAGGA
AAAGATATAAATCGAATCGATCTCAATTTGATGTGTTTTGAAGGTACATA
TCATACATGCCAGGAAAAAATAAGCCCCCAAAAAGAAATAAATGCCGGCC
TATTGTGCG
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protein sequence of jgi.p|Nanoce1779_2|669552

>mRNA_3609-protein ID=mRNA_3609-protein|Name=jgi.p|Nanoce1779_2|669552|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MPTTLPPLPIVDPHFHIWDANTLPNPNLGELTMKALPVYSFLNYEQDCGV
GVAGSVHIEAVVGQAKGAAKALDPVAETRFVLEKVGAEGVKNVNIVAFVK
LSAMPEAQAVIDAHKHLAAERFVGVRMILNYSSDDPSLTWPQVERGDFLT
GGVPSFKEGFALLAPRGLSFDLQVNWFQLQDAATFLQAFPETVVIVDHMG
CLKFGGWR*
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mRNA from alignment at scaffold_6:762964..765422+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3609 ID=mRNA_3609|Name=jgi.p|Nanoce1779_2|669552|organism=Nannochloropsis oceanica|type=mRNA|length=2459bp|location=Sequence derived from alignment at scaffold_6:762964..765422+ (Nannochloropsis oceanica)
AAGTACCTGCAGGCGGAATCGCACGACACAGGGGATCTCGATTAGGTTAC CGTCTGGGTCGCGGGTCTCGTGGTACATGCTGAGGGAGGGCGGAAGGGAG GGAGGGAGGGACGTGAGTAGTGCTTTTTTGAGAAGGGTGTGCCACCTCCT CTCTCCTGTCTCCCCCGCCCTTTTCTCCCTTTCTTCTTATTACCTCAAGT CCCATGACATCCACATTCCTTGAAGGAACTTGACCATATCAAGCGTTACA AGCACTTGGAGATGGGGGAGGGTTAGAGGGGGGGAGGAAAGGAGGGAAAG AAAAGAATGCGTACGTGAGAGCTGTCACTGATTGGGTTTTAAAATGACAC AACTGAACGCACTGGCATAATCTCGATGCGTACATAGGAGTGAGGGAAAA GGGTAATGACAACAAGCCAAACAAAGTCATCCCCCATTCATTTTCCCTCC CCTTCCCCCTCTTCCATCTCCGGACCCCCCCGTTTAAAACTACTCACGGG ATATCGGCAACATGTTCGAGAATAGCACAGTGTACGTCCAGAACTGAATG AATCCGGACAAGGCCGGGTCAGGTAATCTGGCGCCCACCCACAGGTAAGG CATCTGCCCTCCTCTCCCTACATAGATCCCACCCACCACCGCCGCACACA AACAACACAACACCTGCAATCCAAACACCATCATCTCCCGTAAATTGCTG CAGGAAAGGAATATCCAATTTTTATCAGAATTAAATCAGCAGGATTCATG AAGTCATGAGTGAAAGTTTAATGAAAATGTGATTGCGAATGTAATTTCCG AACAACAACTCAACCTCCTGCCCTCCACTGTGGCAGAATCTGCGGTAACT TAAACCACAAATAATTTAAAGCTTTAAATTTTGTGACACTCGTTTACTGT CTACCACGCTTAGGTCTGCGCACCTATGGCTTATGAAGCATAAAGGGGAT CGGGTTCGGGGTCGGTTGAAGTTTGCCACGTAGTGTTCGGTGCAGCATTA TTTTCTTCCAGAGGCACAACTGGCGACGCACACACGTACACATCACTCTA GAACAATCGGGGTGCGACAGCATACCTAACCACAATGCCCTTGAGGAATC TTTTATGGAGCAACTCAAACCAGACTAAACGCATACTCCCCACATAGCCA CCACATCAACGACGTCCTCATCCCCAATATGCCAACAACACTACCACCGC TCCCCATTGTGGATCCTCACTTCCACATTTGGGACGCCAACACGCTTCCC AACCCCAACCTCGGTGAGCTGACCATGAAAGCGCTGCCCGTTTACAGCTT CCTGAATTACGAGCAGGACTGTGGCGTGGGGGTGGCGGGCTCCGTTCACA TCGAAGCCGTCGTTGGTCAGGCCAAGGGTGCTGCAAAAGCGTTAGACCCC GTCGCAGAGACGCGTTTCGTCCTTGAAAAAGTTGGAGCCGAAGGAGTGAA GAACGTCAACATTGTAGCGTTTGTAAAGCTCAGTGCCATGCCCGAAGCAC AGGCCGTCATCGACGCGCACAAACACCTGGCGGCTGAGCGATTCGTTGGC GTGCGGATGATTTTGAATTATTCTTCCGATGACCCGTCTTTGACCTGGCC TCAAGTGGAGCGCGGCGATTTCCTCACAGGCGGCGTACCATCGTTCAAGG AGGGCTTTGCACTGCTTGCCCCGCGGGGGTTATCCTTCGATTTGCAAGTC AATTGGTTTCAGCTTCAAGACGCTGCAACATTTTTGCAGGCCTTTCCCGA AACGGTGGTTATTGTTGATCATATGGGTTGCTTGAAATTTGGGGGCTGGA GATGAAGAGGACGCCAAGCGCATTGCTGTGTGGCAAGAGGGTATGAAGGC GTTAGCTGCTTTGCCGAATGTGTACGTGAAGTTGTCGATGTTGGAATACA TGCGTTCAGGGTGGCAGCACAAAGAGACGGGAATAGCGACGGCAGAGGTA ATGTCAAGCGAGATCAGTGCCGCTGGGAACGATGTGGAGAAGGAAATAAG CGAGGGCAGCAGCAGCACCACCAATGCTAATACTGTTGTGAAGGCGCGTG TCCGAGAAGTTATTGAGTGGTTTGGGTCCGAGCGGTGTATGTTCGCGAGT AACTTCCCAGTGGATAAGTGTCTGTTGGGTGGTGACGCTCAGCCGACCAC GCTTGAGGCGTTGGTGCTGGCGCAGCATGCGTTGGTAAGTGACTTGCCGG AGGAGCAGACACTGCAACTGTTTTCAGAGACGGCCAAGAAGGTATATAAG CTCAAATAGGAGGAGAACGCGAAGAAAGCAGGAGTGCATAAAAGGAGGGA AGGGAAAACGGGGGGAAACAGCAATCAGAAAAAGTTAAAAATAAGCAGGA AAAGATATAAATCGAATCGATCTCAATTTGATGTGTTTTGAAGGTACATA TCATACATGCCAGGAAAAAATAAGCCCCCAAAAAGAAATAAATGCCGGCC TATTGTGCG
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Coding sequence (CDS) from alignment at scaffold_6:762964..765422+

>mRNA_3609 ID=mRNA_3609|Name=jgi.p|Nanoce1779_2|669552|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_6:762964..765422+ (Nannochloropsis oceanica)
ATGCCAACAACACTACCACCGCTCCCCATTGTGGATCCTCACTTCCACAT
TTGGGACGCCAACACGCTTCCCAACCCCAACCTCGGTGAGCTGACCATGA
AAGCGCTGCCCGTTTACAGCTTCCTGAATTACGAGCAGGACTGTGGCGTG
GGGGTGGCGGGCTCCGTTCACATCGAAGCCGTCGTTGGTCAGGCCAAGGG
TGCTGCAAAAGCGTTAGACCCCGTCGCAGAGACGCGTTTCGTCCTTGAAA
AAGTTGGAGCCGAAGGAGTGAAGAACGTCAACATTGTAGCGTTTGTAAAG
CTCAGTGCCATGCCCGAAGCACAGGCCGTCATCGACGCGCACAAACACCT
GGCGGCTGAGCGATTCGTTGGCGTGCGGATGATTTTGAATTATTCTTCCG
ATGACCCGTCTTTGACCTGGCCTCAAGTGGAGCGCGGCGATTTCCTCACA
GGCGGCGTACCATCGTTCAAGGAGGGCTTTGCACTGCTTGCCCCGCGGGG
GTTATCCTTCGATTTGCAAGTCAATTGGTTTCAGCTTCAAGACGCTGCAA
CATTTTTGCAGGCCTTTCCCGAAACGGTGGTTATTGTTGATCATATGGGT
TGCTTGAAATTTGGGGGCTGGAGATGA
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Synonyms
Publications