jgi.p|Nanoce1779_2|525629, mRNA_3608 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525629
Unique NamemRNA_3608
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1008
Alignment locationscaffold_6:761858..762865 +

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Properties
Property NameValue
TranscriptId525715
TrackFilteredModels2
ProteinId525629
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:761858..762865 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525629gene_3608Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525629mRNA_3608-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3608CDS_3608Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3608 ID=mRNA_3608|Name=jgi.p|Nanoce1779_2|525629|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp
ATGTTAGACCCCGGCGGCAGCAAAAACCCCTCCACCTCCTTGTCTGCCTC
CTCCTCCTCGGGCAATGGTGCCACCTATGGGACCATCCGACCAGTTCCCC
GGCAATACCTAAATTACCACGTCCGGCAACGCGAAAACGGCGCCTGGCAA
GCGACCGTGTCATTAGTACAGCCCTTTGTCCGTGGGCTTTTCACAGACCC
ACAGGGCATGCGCCCGGCCTACATCACCATGGGCTTCTATGGGACGGAAG
AAGGGGCCCTGGCGGCATGTCGAAACCACGCCCCTCCCGTGTGGGCCGAA
CCTGTGAAAGGCTGCGTCTGCTACATGTGTCTAGACGGCAAAAATCTATA
TAAGTCGCCGTTGCACTGTCGGAATTGCGGGCAATTAGTGTGTCGGAAGT
GCTCTAAGTCCCGTTGGCCTCAGGGCATGCTCCCTTCCACCTACCACAAC
AATGAGCGTACTGTCCGTATCTGTGACGCCTGCAATCATTTAGCATGGAA
TTTTCGTCGTGCCTTGAAGGACGGGGATTGGACAAGGGTGCTTGAACTGT
GTGCGAGTGGGAATGTGAACATCTGGACTCCTTTCCTGGTGGAATCGGTG
AGGGAGTACCCGGTGCATTGCGCGGCGGAAGGAGGTAACCTGGAAGTATT
ACGATGGCTGATCGATGAGCTTGGATGTCCTCTATACGAGACTACGGATG
GGGCTGCCCCACTCGTGACGCAGAAGGGGGATAGTGTGCTCGGGGTGGCG
GCGAGGTATCAAAGGACGGCCATCATGCGGTGGTTGGTGACTGTCAAGGG
GTGCAAGACCTCAGAGATTGTTTGTAGGCAACTGTTGTGGGGAACGATAG
ACTTTTTGCTGCGGGAAGAGTGTGGCGGTGAAGGGGGGGGAGAAAGGGGG
AGGTGTAGTGCGCGTTGGATGAGCAGTCCGCGTGTGTCATCGCATTCCTA
TCGATCGCGGCAACAGATTATTGGAGAGGAGGAAAAGAAGGAGGAGGATA
GGTTTTGA
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protein sequence of jgi.p|Nanoce1779_2|525629

>mRNA_3608-protein ID=mRNA_3608-protein|Name=jgi.p|Nanoce1779_2|525629|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MLDPGGSKNPSTSLSASSSSGNGATYGTIRPVPRQYLNYHVRQRENGAWQ
ATVSLVQPFVRGLFTDPQGMRPAYITMGFYGTEEGALAACRNHAPPVWAE
PVKGCVCYMCLDGKNLYKSPLHCRNCGQLVCRKCSKSRWPQGMLPSTYHN
NERTVRICDACNHLAWNFRRALKDGDWTRVLELCASGNVNIWTPFLVESV
REYPVHCAAEGGNLEVLRWLIDELGCPLYETTDGAAPLVTQKGDSVLGVA
ARYQRTAIMRWLVTVKGCKTSEIVCRQLLWGTIDFLLREECGGEGGGERG
RCSARWMSSPRVSSHSYRSRQQIIGEEEKKEEDRF*
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mRNA from alignment at scaffold_6:761858..762865+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3608 ID=mRNA_3608|Name=jgi.p|Nanoce1779_2|525629|organism=Nannochloropsis oceanica|type=mRNA|length=1008bp|location=Sequence derived from alignment at scaffold_6:761858..762865+ (Nannochloropsis oceanica)
ATGTTAGACCCCGGCGGCAGCAAAAACCCCTCCACCTCCTTGTCTGCCTC
CTCCTCCTCGGGCAATGGTGCCACCTATGGGACCATCCGACCAGTTCCCC
GGCAATACCTAAATTACCACGTCCGGCAACGCGAAAACGGCGCCTGGCAA
GCGACCGTGTCATTAGTACAGCCCTTTGTCCGTGGGCTTTTCACAGACCC
ACAGGGCATGCGCCCGGCCTACATCACCATGGGCTTCTATGGGACGGAAG
AAGGGGCCCTGGCGGCATGTCGAAACCACGCCCCTCCCGTGTGGGCCGAA
CCTGTGAAAGGCTGCGTCTGCTACATGTGTCTAGACGGCAAAAATCTATA
TAAGTCGCCGTTGCACTGTCGGAATTGCGGGCAATTAGTGTGTCGGAAGT
GCTCTAAGTCCCGTTGGCCTCAGGGCATGCTCCCTTCCACCTACCACAAC
AATGAGCGTACTGTCCGTATCTGTGACGCCTGCAATCATTTAGCATGGAA
TTTTCGTCGTGCCTTGAAGGACGGGGATTGGACAAGGGTGCTTGAACTGT
GTGCGAGTGGGAATGTGAACATCTGGACTCCTTTCCTGGTGGAATCGGTG
AGGGAGTACCCGGTGCATTGCGCGGCGGAAGGAGGTAACCTGGAAGTATT
ACGATGGCTGATCGATGAGCTTGGATGTCCTCTATACGAGACTACGGATG
GGGCTGCCCCACTCGTGACGCAGAAGGGGGATAGTGTGCTCGGGGTGGCG
GCGAGGTATCAAAGGACGGCCATCATGCGGTGGTTGGTGACTGTCAAGGG
GTGCAAGACCTCAGAGATTGTTTGTAGGCAACTGTTGTGGGGAACGATAG
ACTTTTTGCTGCGGGAAGAGTGTGGCGGTGAAGGGGGGGGAGAAAGGGGG
AGGTGTAGTGCGCGTTGGATGAGCAGTCCGCGTGTGTCATCGCATTCCTA
TCGATCGCGGCAACAGATTATTGGAGAGGAGGAAAAGAAGGAGGAGGATA
GGTTTTGA
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Coding sequence (CDS) from alignment at scaffold_6:761858..762865+

>mRNA_3608 ID=mRNA_3608|Name=jgi.p|Nanoce1779_2|525629|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_6:761858..762865+ (Nannochloropsis oceanica)
ATGTTAGACCCCGGCGGCAGCAAAAACCCCTCCACCTCCTTGTCTGCCTC
CTCCTCCTCGGGCAATGGTGCCACCTATGGGACCATCCGACCAGTTCCCC
GGCAATACCTAAATTACCACGTCCGGCAACGCGAAAACGGCGCCTGGCAA
GCGACCGTGTCATTAGTACAGCCCTTTGTCCGTGGGCTTTTCACAGACCC
ACAGGGCATGCGCCCGGCCTACATCACCATGGGCTTCTATGGGACGGAAG
AAGGGGCCCTGGCGGCATGTCGAAACCACGCCCCTCCCGTGTGGGCCGAA
CCTGTGAAAGGCTGCGTCTGCTACATGTGTCTAGACGGCAAAAATCTATA
TAAGTCGCCGTTGCACTGTCGGAATTGCGGGCAATTAGTGTGTCGGAAGT
GCTCTAAGTCCCGTTGGCCTCAGGGCATGCTCCCTTCCACCTACCACAAC
AATGAGCGTACTGTCCGTATCTGTGACGCCTGCAATCATTTAGCATGGAA
TTTTCGTCGTGCCTTGAAGGACGGGGATTGGACAAGGGTGCTTGAACTGT
GTGCGAGTGGGAATGTGAACATCTGGACTCCTTTCCTGGTGGAATCGGTG
AGGGAGTACCCGGTGCATTGCGCGGCGGAAGGAGGTAACCTGGAAGTATT
ACGATGGCTGATCGATGAGCTTGGATGTCCTCTATACGAGACTACGGATG
GGGCTGCCCCACTCGTGACGCAGAAGGGGGATAGTGTGCTCGGGGTGGCG
GCGAGGTATCAAAGGACGGCCATCATGCGGTGGTTGGTGACTGTCAAGGG
GTGCAAGACCTCAGAGATTGTTTGTAGGCAACTGTTGTGGGGAACGATAG
ACTTTTTGCTGCGGGAAGAGTGTGGCGGTGAAGGGGGGGGAGAAAGGGGG
AGGTGTAGTGCGCGTTGGATGAGCAGTCCGCGTGTGTCATCGCATTCCTA
TCGATCGCGGCAACAGATTATTGGAGAGGAGGAAAAGAAGGAGGAGGATA
GGTTTTGA
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Synonyms
Publications