jgi.p|Nanoce1779_2|582754, mRNA_3607 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582754
Unique NamemRNA_3607
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length556
Alignment locationscaffold_6:760712..761267 -

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Properties
Property NameValue
TranscriptId582840
TrackFilteredModels2
ProteinId582754
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:760712..761267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582754gene_3607Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582754mRNA_3607-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3607CDS_3607Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3607 ID=mRNA_3607|Name=jgi.p|Nanoce1779_2|582754|organism=Nannochloropsis oceanica|type=mRNA|length=556bp
AGGATATGCCACAAATACAGGGTACGTTGCCTGGCCAATGTCCAGGATTG
TGTCACAACATGTTTTGTTGATGTGTAGTCTCTGCAGACTTTGCATTGGT
GCTAGGACCTCCTGTTTGTTTTCCTCATGCGACCCATCACGACCAGCCGC
AGACGATAAGTGGGTGTTCATCATCGGTCTCCGTAAGTGCTGCAATTGCA
TTGAATTTTCTTACACTCCGTGCATGATTTCTCTCCCACACGCTGCTCTC
CCTCTTTTTCCTTCTTCTTTCTTTCTTTTCTTTCCTTTCTTTTCACTTTC
TTCTTGATATGATGTAAGATACGTCGCAACAGGTGCACGACAAGCAGCGT
AGCTCAGAGGAAGAGTGTAGGGCCCATAACCCTAATGCCGTACGATCGAA
ACGTACCGCTGCTAACCTTTTGCAATCTTTGTGGCACAATTACCTGCTAT
CCGGCCCATTTATTTTTTAGGACGATGTGCCCTTCTTAAACTGACTCAAC
CGACACCAACACCGGCGAAAGGCAACAGGCAACATGCAACATGGCATTCT
CTATGG
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protein sequence of jgi.p|Nanoce1779_2|582754

>mRNA_3607-protein ID=mRNA_3607-protein|Name=jgi.p|Nanoce1779_2|582754|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MSRIVSQHVLLMCSLCRLCIGARTSCLFSSCDPSRPAADDKWVFIIGLRK
CCNCIEFSYTPCMISLPHAALPLFPSSFFLFFPFFSLSS*
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mRNA from alignment at scaffold_6:760712..761267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3607 ID=mRNA_3607|Name=jgi.p|Nanoce1779_2|582754|organism=Nannochloropsis oceanica|type=mRNA|length=556bp|location=Sequence derived from alignment at scaffold_6:760712..761267- (Nannochloropsis oceanica)
AGGATATGCCACAAATACAGGGTACGTTGCCTGGCCAATGTCCAGGATTG
TGTCACAACATGTTTTGTTGATGTGTAGTCTCTGCAGACTTTGCATTGGT
GCTAGGACCTCCTGTTTGTTTTCCTCATGCGACCCATCACGACCAGCCGC
AGACGATAAGTGGGTGTTCATCATCGGTCTCCGTAAGTGCTGCAATTGCA
TTGAATTTTCTTACACTCCGTGCATGATTTCTCTCCCACACGCTGCTCTC
CCTCTTTTTCCTTCTTCTTTCTTTCTTTTCTTTCCTTTCTTTTCACTTTC
TTCTTGATATGATGTAAGATACGTCGCAACAGGTGCACGACAAGCAGCGT
AGCTCAGAGGAAGAGTGTAGGGCCCATAACCCTAATGCCGTACGATCGAA
ACGTACCGCTGCTAACCTTTTGCAATCTTTGTGGCACAATTACCTGCTAT
CCGGCCCATTTATTTTTTAGGACGATGTGCCCTTCTTAAACTGACTCAAC
CGACACCAACACCGGCGAAAGGCAACAGGCAACATGCAACATGGCATTCT
CTATGG
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Coding sequence (CDS) from alignment at scaffold_6:760712..761267-

>mRNA_3607 ID=mRNA_3607|Name=jgi.p|Nanoce1779_2|582754|organism=Nannochloropsis oceanica|type=CDS|length=270bp|location=Sequence derived from alignment at scaffold_6:760712..761267- (Nannochloropsis oceanica)
ATGTCCAGGATTGTGTCACAACATGTTTTGTTGATGTGTAGTCTCTGCAG
ACTTTGCATTGGTGCTAGGACCTCCTGTTTGTTTTCCTCATGCGACCCAT
CACGACCAGCCGCAGACGATAAGTGGGTGTTCATCATCGGTCTCCGTAAG
TGCTGCAATTGCATTGAATTTTCTTACACTCCGTGCATGATTTCTCTCCC
ACACGCTGCTCTCCCTCTTTTTCCTTCTTCTTTCTTTCTTTTCTTTCCTT
TCTTTTCACTTTCTTCTTGA
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Synonyms
Publications