jgi.p|Nanoce1779_2|367601, mRNA_3605 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|367601
Unique NamemRNA_3605
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1356
Alignment locationscaffold_6:758356..759825 -

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Properties
Property NameValue
TranscriptId367687
TrackFilteredModels2
ProteinId367601
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:758356..759825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|367601gene_3605Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|367601mRNA_3605-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3605CDS_3605Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3605 ID=mRNA_3605|Name=jgi.p|Nanoce1779_2|367601|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
TCAAACACACAATTGCGTCCCCTACATATTCTTTGCTTGTATGGTGGTTG
ATCCGAAGGACGTGGATGTGTACGTGAGAGCTGGCGAAGTCATGCAGTTG
CTCCGAGCACGCCTTCTTCATCATGCACATCTTCTTTTACGGACGCTCAT
CAATGCTCCTTCAATCTCACACTATTTACCCCAACTTCACCCTAGACAAG
ACAGACAGAGGGCATGGGACGCTCACGGTCCGTCTCGGAGGGCTCGGAAG
CATCGGTTGCCTCTTCATCAGGGGCGGCATCTTTGCGTAGCTCCCGCTCT
CGTTCGGCAGGTGGAAACAAGGTGGAAGACAAGCGGCGTCCGCAAGAGCA
ACAGCGCAAGAAGCGCCAGTACGACTCTGTATCTCCGTCCCGCTCGCGCT
CGAGGTCGCCTGCCAGTGATGTAGGGGCAGGGAGGGAGAAGGAGGAAAAT
AGTGGGAAGCGGCAGCGGTCTTCCCCAAGTCCGGCAGCTCCCTCCCCTGC
CGCCTCTGCGTCGGAGGACGAGGAAGACGACGAGCCTGCCAAGCTGCACG
TTTCGGGACTTAGCCGCAACGTGACGGATGCGCACTTGCAAGAGATTTTT
TCCACGTTTGGAAATTTGTCGCGTGTGGAATTGGTGGTGGACCGACGGGT
GGGCTTATCAAGAGGGTTTGCTTATGTGGAATTCGAGCATCGCAAAGACG
CAGAGGAAGCCCAGCTGTACATGGATGGAGGTCAGCTAGATGGCAGAGTA
TTAAAAGTGAACTTTATTTTGTTGGGTGGTCGCGGCGGTGGTAATGGAGG
AGTAGAGAGAGAGATGGGTGCCAAAGCGGGAGGCGGACGACGTTCGCGTT
CCCCACGCGGACGGAGCCGTACTCGCTCGCCACCCGCGCGTGGCGGTGGG
CGTGACCGAGATTTGTATAGAAACCGCGGTCGCTCCCGCTCACCGTCGGG
ACGCTTTGGTGTTGGAGGTGGAGAGCGTAGAGGGGAGGGTCGTGGCCGGA
GCCGTGAACCTCCTTATCGTCGTCAGCAGAACTTCCGAGGACGGTCTCCC
CCGCGTCGGGGGCCGGGAGGAGGAGGAGGGTTTGGAGGTCGTCGTTCTAG
GTCCCCACCCACCCGTCGGGGCCGTTTTTCTCCTTCTCGCTCTCGCTCCC
CTCCCCGACGTGGGAGGGCTGGGCGCCGATCACGGTCGGACTCGTCCTCG
GCGTCGAGCCGGAGCAGTCGTTCCTCCTCCTCCTCCTCCTCTTCTGCGTC
GTCGGCCTCGTCGCGCGGTGGAAGAGGACGGGGTAGGAGCAAGAGCAGTA
GCCGCGGAAGCTCCTCGCCTTCATATAGTCGGGGCTCTTCGCGCTGATAA
GAGGAA
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protein sequence of jgi.p|Nanoce1779_2|367601

>mRNA_3605-protein ID=mRNA_3605-protein|Name=jgi.p|Nanoce1779_2|367601|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MGRSRSVSEGSEASVASSSGAASLRSSRSRSAGGNKVEDKRRPQEQQRKK
RQYDSVSPSRSRSRSPASDVGAGREKEENSGKRQRSSPSPAAPSPAASAS
EDEEDDEPAKLHVSGLSRNVTDAHLQEIFSTFGNLSRVELVVDRRVGLSR
GFAYVEFEHRKDAEEAQLYMDGGQLDGRVLKVNFILLGGRGGGNGGVERE
MGAKAGGGRRSRSPRGRSRTRSPPARGGGRDRDLYRNRGRSRSPSGRFGV
GGGERRGEGRGRSREPPYRRQQNFRGRSPPRRGPGGGGGFGGRRSRSPPT
RRGRFSPSRSRSPPRRGRAGRRSRSDSSSASSRSSRSSSSSSSSASSASS
RGGRGRGRSKSSSRGSSSPSYSRGSSR*
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mRNA from alignment at scaffold_6:758356..759825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3605 ID=mRNA_3605|Name=jgi.p|Nanoce1779_2|367601|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp|location=Sequence derived from alignment at scaffold_6:758356..759825- (Nannochloropsis oceanica)
TCAAACACACAATTGCGTCCCCTACATATTCTTTGCTTGTATGGTGGTTG
ATCCGAAGGACGTGGATGTGTACGTGAGAGCTGGCGAAGTCATGCAGTTG
CTCCGAGCACGCCTTCTTCATCATGCACATCTTCTTTTACGGACGCTCAT
CAATGCTCCTTCAATCTCACACTATTTACCCCAACTTCACCCTAGACAAG
ACAGACAGAGGGCATGGGACGCTCACGGTCCGTCTCGGAGGGCTCGGAAG
CATCGGTTGCCTCTTCATCAGGGGCGGCATCTTTGCGTAGCTCCCGCTCT
CGTTCGGCAGGTGGAAACAAGGTGGAAGACAAGCGGCGTCCGCAAGAGCA
ACAGCGCAAGAAGCGCCAGTACGACTCTGTATCTCCGTCCCGCTCGCGCT
CGAGGTCGCCTGCCAGTGATGTAGGGGCAGGGAGGGAGAAGGAGGAAAAT
AGTGGGAAGCGGCAGCGGTCTTCCCCAAGTCCGGCAGCTCCCTCCCCTGC
CGCCTCTGCGTCGGAGGACGAGGAAGACGACGAGCCTGCCAAGCTGCACG
TTTCGGGACTTAGCCGCAACGTGACGGATGCGCACTTGCAAGAGATTTTT
TCCACGTTTGGAAATTTGTCGCGTGTGGAATTGGTGGTGGACCGACGGGT
GGGCTTATCAAGAGGGTTTGCTTATGTGGAATTCGAGCATCGCAAAGACG
CAGAGGAAGCCCAGCTGTACATGGATGGAGGTCAGCTAGATGGCAGAGTA
TTAAAAGTGAACTTTATTTTGTTGGGTGGTCGCGGCGGTGGTAATGGAGG
AGTAGAGAGAGAGATGGGTGCCAAAGCGGGAGGCGGACGACGTTCGCGTT
CCCCACGCGGACGGAGCCGTACTCGCTCGCCACCCGCGCGTGGCGGTGGG
CGTGACCGAGATTTGTATGACCGAAATGGGGGAGGTCCTGCTGGTGGTGC
TGGAGGACGGGAGGGGTGGCGTGGTCGCTCTCGTTCGCCGCCTCGTGGTG
GAGGAAGAGGAGGAGGAGGGGGGGGGGGGTATAGAAACCGCGGTCGCTCC
CGCTCACCGTCGGGACGCTTTGGTGTTGGAGGTGGAGAGCGTAGAGGGGA
GGGTCGTGGCCGGAGCCGTGAACCTCCTTATCGTCGTCAGCAGAACTTCC
GAGGACGGTCTCCCCCGCGTCGGGGGCCGGGAGGAGGAGGAGGGTTTGGA
GGTCGTCGTTCTAGGTCCCCACCCACCCGTCGGGGCCGTTTTTCTCCTTC
TCGCTCTCGCTCCCCTCCCCGACGTGGGAGGGCTGGGCGCCGATCACGGT
CGGACTCGTCCTCGGCGTCGAGCCGGAGCAGTCGTTCCTCCTCCTCCTCC
TCCTCTTCTGCGTCGTCGGCCTCGTCGCGCGGTGGAAGAGGACGGGGTAG
GAGCAAGAGCAGTAGCCGCGGAAGCTCCTCGCCTTCATATAGTCGGGGCT
CTTCGCGCTGATAAGAGGAA
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Coding sequence (CDS) from alignment at scaffold_6:758356..759825-

>mRNA_3605 ID=mRNA_3605|Name=jgi.p|Nanoce1779_2|367601|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_6:758356..759825- (Nannochloropsis oceanica)
GTATAGAAACCGCGGTCGCTCCCGCTCACCGTCGGGACGCTTTGGTGTTG
GAGGTGGAGAGCGTAGAGGGGAGGGTCGTGGCCGGAGCCGTGAACCTCCT
TATCGTCGTCAGCAGAACTTCCGAGGACGGTCTCCCCCGCGTCGGGGGCC
GGGAGGAGGAGGAGGGTTTGGAGGTCGTCGTTCTAGGTCCCCACCCACCC
GTCGGGGCCGTTTTTCTCCTTCTCGCTCTCGCTCCCCTCCCCGACGTGGG
AGGGCTGGGCGCCGATCACGGTCGGACTCGTCCTCGGCGTCGAGCCGGAG
CAGTCGTTCCTCCTCCTCCTCCTCCTCTTCTGCGTCGTCGGCCTCGTCGC
GCGGTGGAAGAGGACGGGGTAGGAGCAAGAGCAGTAGCCGCGGAAGCTCC
TCGCCTTCATATAGTCGGGGCTCTTCGCGCTGAATGGGACGCTCACGGTC
CGTCTCGGAGGGCTCGGAAGCATCGGTTGCCTCTTCATCAGGGGCGGCAT
CTTTGCGTAGCTCCCGCTCTCGTTCGGCAGGTGGAAACAAGGTGGAAGAC
AAGCGGCGTCCGCAAGAGCAACAGCGCAAGAAGCGCCAGTACGACTCTGT
ATCTCCGTCCCGCTCGCGCTCGAGGTCGCCTGCCAGTGATGTAGGGGCAG
GGAGGGAGAAGGAGGAAAATAGTGGGAAGCGGCAGCGGTCTTCCCCAAGT
CCGGCAGCTCCCTCCCCTGCCGCCTCTGCGTCGGAGGACGAGGAAGACGA
CGAGCCTGCCAAGCTGCACGTTTCGGGACTTAGCCGCAACGTGACGGATG
CGCACTTGCAAGAGATTTTTTCCACGTTTGGAAATTTGTCGCGTGTGGAA
TTGGTGGTGGACCGACGGGTGGGCTTATCAAGAGGGTTTGCTTATGTGGA
ATTCGAGCATCGCAAAGACGCAGAGGAAGCCCAGCTGTACATGGATGGAG
GTCAGCTAGATGGCAGAGTATTAAAAGTGAACTTTATTTTGTTGGGTGGT
CGCGGCGGTGGTAATGGAGGAGTAGAGAGAGAGATGGGTGCCAAAGCGGG
AGGCGGACGACGTTCGCGTTCCCCACGCGGACGGAGCCGTACTCGCTCGC
CACCCGCGCGTGGCGGTGGGCGTGACCGAGATTTGTATAGAAACCGCGGT
CGCTCCCGCTCACCGTCGGGACGCTTTGGTGTTGGAGGTGGAGAGCGTAG
AGGGGAGGGTCGTGGCCGGAGCCGTGAACCTCCTTATCGTCGTCAGCAGA
ACTTCCGAGGACGGTCTCCCCCGCGTCGGGGGCCGGGAGGAGGAGGAGGG
TTTGGAGGTCGTCGTTCTAGGTCCCCACCCACCCGTCGGGGCCGTTTTTC
TCCTTCTCGCTCTCGCTCCCCTCCCCGACGTGGGAGGGCTGGGCGCCGAT
CACGGTCGGACTCGTCCTCGGCGTCGAGCCGGAGCAGTCGTTCCTCCTCC
TCCTCCTCCTCTTCTGCGTCGTCGGCCTCGTCGCGCGGTGGAAGAGGACG
GGGTAGGAGCAAGAGCAGTAGCCGCGGAAGCTCCTCGCCTTCATATAGTC
GGGGCTCTTCGCGCTGAATGGGACGCTCACGGTCCGTCTCGGAGGGCTCG
GAAGCATCGGTTGCCTCTTCATCAGGGGCGGCATCTTTGCGTAGCTCCCG
CTCTCGTTCGGCAGGTGGAAACAAGGTGGAAGACAAGCGGCGTCCGCAAG
AGCAACAGCGCAAGAAGCGCCAGTACGACTCTGTATCTCCGTCCCGCTCG
CGCTCGAGGTCGCCTGCCAGTGATGTAGGGGCAGGGAGGGAGAAGGAGGA
AAATAGTGGGAAGCGGCAGCGGTCTTCCCCAAGTCCGGCAGCTCCCTCCC
CTGCCGCCTCTGCGTCGGAGGACGAGGAAGACGACGAGCCTGCCAAGCTG
CACGTTTCGGGACTTAGCCGCAACGTGACGGATGCGCACTTGCAAGAGAT
TTTTTCCACGTTTGGAAATTTGTCGCGTGTGGAATTGGTGGTGGACCGAC
GGGTGGGCTTATCAAGAGGGTTTGCTTATGTGGAATTCGAGCATCGCAAA
GACGCAGAGGAAGCCCAGCTGTACATGGATGGAGGTCAGCTAGATGGCAG
AGTATTAAAAGTGAACTTTATTTTGTTGGGTGGTCGCGGCGGTGGTAATG
GAGGAGTAGAGAGAGAGATGGGTGCCAAAGCGGGAGGCGGACGACGTTCG
CGTTCCCCACGCGGACGGAGCCGTACTCGCTCGCCACCCGCGCGTGGCGG
TGGGCGTGACCGAGATTT
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Synonyms
Publications