jgi.p|Nanoce1779_2|367458, mRNA_3604 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|367458
Unique Name	mRNA_3604
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1593
Alignment location	scaffold_6:756147..757950 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	367544
Track	FilteredModels2
ProteinId	367458

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:756147..757950 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|367458	gene_3604	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|367458	mRNA_3604-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3604	CDS_3604	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:756147..757950+
coding sequence from alignment at scaffold_6:756147..757950+

mRNA sequence

>mRNA_3604 ID=mRNA_3604|Name=jgi.p|Nanoce1779_2|367458|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
CAGCTGGACGCGAGGATGATTTTGTTGCGGCTGAAGATGAGGTGGAGTTT
ATGGACTCCGAAGAGGAGGAAGAGTTGGTCTCGAGAAGAAAGAAGGAAAG
AAAGGAGCGAAGAAGGGGTTTGATTATGCGTGAGAAGGAAGGGGAAAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGGACAAAGAGGAGGGTGGGGCAGCC
TCATCGGGAACGAAGCGACGTAAAATTATTCTAGCCAGCGATGACGATGA
TCATGATGATAATTCTAGCACTAACAGCAGCAGCAGCAGCAGCAGCAGTG
TCAGCAGCGAAGAAGAGGAGTCGAGTGAGGACGAGGGTTTGATGCACATG
CGTGTTCATGCTGCCTTTTTAGCGGAGCAAGGCGAGGTGCTGCCATTGTT
CATGCAGCGTAAGGCCATGAGTACCCGGGACGCTTTTCTTCTTTACCTGG
AAATGCTTGCGCGCTCTGTGGCTGATCCCGCCTTTCGCGAAGGGATGAGA
AGGAACCCCATGAGTGAGCGTTACGGCCGTTTCAGCAACGCCAAGAAGAA
GCTAGAGGATCTGATTTGCACCAAGCGCGAGTCGTTGCTTGGGTCCATGC
AGTGGAAGTTGCTTTGGGTGGAGGAACTGAGGGGGAGGCCCCGGTTTGAG
TTTTTCGATATCTTGGGAGAGAGACCGGATAGGTGCCAGGTGTGTGGGAG
GAGGAGGCATCCGTGTGCGTTTGAAGTGAGGCTGTCCGGGCCGAGGTATG
ATAGCATGGCTTTGTGGGAGAGCAGGCGGTGGGAAGAGGCATTGCCCTGT
CGCTTGGAGGTCTTTGGGACGCCGGAGGGGGATGAGGAGGTGAGAGAGGC
GGAGGAAGAGGAGGGGAAAGGGGAGGGGGAGGAGGAGGAAGAGGAGGAGG
AAGAAGGGAAGCCGATGGAGGGGAAGGTGGGGGGTTGGTGGCATGCCGGA
TCGACGTGCAAGTACAAGAGCTTGTGTTATTCATCGATGATTCATTACAA
GTATTATTTATTGCGGCGTGTGGCCAGGAGGTTGAAGGGGTTTGCGGTGA
CAGGGGCGAGGTCAAGGAGGGTGAAGAGGCGGGAGAGGGAGTTGCTGCAG
AGCCCGGTGAAGGCCAGGAAAAGTCGAAAGACGGGCTTGTATGAGGTGGT
GGTGTCGGTGGAGGAGTTGATGGAGGAGGAGGGGTGGGTGGAGGCGGAGT
TTGAAAGGTTTGAGAAGTTGTTGAGTCTGGTGGAGAATCTCATGATGGAT
GGGGGGGCGGCGACGAGCACCGTGACGACGGCAAGGCAGTTGGCTGGATA
TAGGAAATGTGCGTTATGCAGCTCTAGGAAGCTTGTTGCAGCGATAGTTG
TAGGAATAGCAGCAGCAGGAACAACAGAAGAGAGAGGTGGGAGAGAGGGA
CATACAGGGAAGGTTCAGGGGTGAGAAGAGAGGGATGAGAGGTAACGAAC
AAGACATGAGGAAATCTACCATGTACACCATCATCATTATCATCATCATC
ATCATCATTTTCAGCAGCAGCAGCAATAGCAGCAGCAGCAGCAGCAGCAC
ATGGAAAAGTAAAGGTCGACTTGCAGACTCAACGGCCACACAA

protein sequence of jgi.p|Nanoce1779_2|367458

>mRNA_3604-protein ID=mRNA_3604-protein|Name=jgi.p|Nanoce1779_2|367458|organism=Nannochloropsis oceanica|type=polypeptide|length=458bp
MDSEEEEELVSRRKKERKERRRGLIMREKEGEKKKKKKKKKKDKEEGGAA
SSGTKRRKIILASDDDDHDDNSSTNSSSSSSSSVSSEEEESSEDEGLMHM
RVHAAFLAEQGEVLPLFMQRKAMSTRDAFLLYLEMLARSVADPAFREGMR
RNPMSERYGRFSNAKKKLEDLICTKRESLLGSMQWKLLWVEELRGRPRFE
FFDILGERPDRCQVCGRRRHPCAFEVRLSGPRYDSMALWESRRWEEALPC
RLEVFGTPEGDEEVREAEEEEGKGEGEEEEEEEEEGKPMEGKVGGWWHAG
STCKYKSLCYSSMIHYKYYLLRRVARRLKGFAVTGARSRRVKRRERELLQ
SPVKARKSRKTGLYEVVVSVEELMEEEGWVEAEFERFEKLLSLVENLMMD
GGAATSTVTTARQLAGYRKCALCSSRKLVAAIVVGIAAAGTTEERGGREG
HTGKVQG*

mRNA from alignment at scaffold_6:756147..757950+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3604 ID=mRNA_3604|Name=jgi.p|Nanoce1779_2|367458|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp|location=Sequence derived from alignment at scaffold_6:756147..757950+ (Nannochloropsis oceanica)
CAGCTGGACGCGAGGATGATTTTGTTGCGGCTGAAGATGAGGTGGAGTTT
ATGGACTCCGAAGAGGAGGAAGAGTTGGTCTCGAGAAGAAAGAAGGAAAG
AAAGGAGCGAAGAAGGGGTTTGATTATGCGTGAGAAGGAAGGGGAAAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGGACAAAGAGGAGGGTGGGGCAGCC
TCATCGGGAACGAAGCGACGTAAAATTATTCTAGCCAGCGATGACGATGA
TCATGATGATAATTCTAGCACTAACAGCAGCAGCAGCAGCAGCAGCAGTG
TCAGCAGCGAAGAAGAGGAGTCGAGTGAGGACGAGGGTTTGATGCACATG
CGTGTTCATGCTGCCTTTTTAGCGGAGCAAGGCGAGGTGCTGCCATTGTT
CATGCAGCGTAAGGCCATGAGTACCCGGGACGCTTTTCTTCTTTACCTGG
AAATGCTTGCGCGCTCTGTGGCTGATCCCGCCTTTCGCGAAGGGATGAGA
AGGAACCCCATGAGTGAGCGTTACGGCCGTTTCAGCAACGCCAAGAAGAA
GCTAGAGGATCTGATTTGCACCAAGCGCGAGTCGTTGCTTGGGTCCATGC
AGTGGAAGTTGCTTTGGGTGGAGGAACTGAGGGGGAGGCCCCGGTTTGAG
TTTTTCGATATCTTGGGAGAGAGACCGGATAGGTGCCAGGTGTGTGGGAG
GAGGAGGCATCCGTGTGCGTTTGAAGTGAGGCTGTCCGGGCCGAGGTATG
ATAGCATGGCTTTGTGGGAGAGCAGGCGGTGGGAAGAGGCATTGCCCTGT
CGCTTGGAGGTCTTTGGGACGCCGGAGGGGGATGAGGAGGTGAGAGAGGC
GGAGGAAGAGGAGGGGAAAGGGGAGGGGGAGGAGGAGGAAGAGGAGGAGG
AAGAAGGGAAGCCGATGGAGGGGAAGGTGGGGGGTTGGTGGCATGCCGGA
TCGACGTGCAAGTACAAGAGCTTGTGTTATTCATCGATGATTCATTACAA
GTATTATTTATTGCGGCGTGTGGCCAGGAGGTTGAAGGGGTTTGCGGTGA
CAGGGGCGAGGTCAAGGAGGGTGAAGAGGCGGGAGAGGGAGTTGCTGCAG
AGCCCGGTGAAGGCCAGGAAAAGTCGAAAGACGGGCTTGTATGAGGTGGT
GGTGTCGGTGGAGGAGTTGATGGAGGAGGAGGGGTGGGTGGAGGCGGAGT
TTGAAAGGTTTGAGAAGTTGTTGAGTCTGGTGGAGAATCTCATGATGGAT
GGGGGGGCGGCGACGAGCACCGTGACGACGGCAAGGCAGTTGGCTGGGTT
GTGGGAGGAGGATGATGAGAAGGGAGGAGGAGGGGGGAGAGGACGGGGAG
AGGGGGGAGGAGGGCGCGGGGGAAGGAGATATGGAAGTGCGCGGGGGGTT
GAGGAGTGGAGCGAGGAGGAAGAGGGCGAGGAGGAGGAGGAGGAGGAGGA
GGAGGGGTTTCGTGCGCCAGCTGTGGAGGGGCGGAGGGGATACAATCCGT
TGGTGTAGATATAGGAAATGTGCGTTATGCAGCTCTAGGAAGCTTGTTGC
AGCGATAGTTGTAGGAATAGCAGCAGCAGGAACAACAGAAGAGAGAGGTG
GGAGAGAGGGACATACAGGGAAGGTTCAGGGGTGAGAAGAGAGGGATGAG
AGGTAACGAACAAGACATGAGGAAATCTACCATGTACACCATCATCATTA
TCATCATCATCATCATCATTTTCAGCAGCAGCAGCAATAGCAGCAGCAGC
AGCAGCAGCACATGGAAAAGTAAAGGTCGACTTGCAGACTCAACGGCCAC
ACAA

Coding sequence (CDS) from alignment at scaffold_6:756147..757950+

>mRNA_3604 ID=mRNA_3604|Name=jgi.p|Nanoce1779_2|367458|organism=Nannochloropsis oceanica|type=CDS|length=2748bp|location=Sequence derived from alignment at scaffold_6:756147..757950+ (Nannochloropsis oceanica)
ATGGACTCCGAAGAGGAGGAAGAGTTGGTCTCGAGAAGAAAGAAGGAAAG
AAAGGAGCGAAGAAGGGGTTTGATTATGCGTGAGAAGGAAGGGGAAAAGA
AGAAGAAGAAGAAGAAGAAGAAGAAGGACAAAGAGGAGGGTGGGGCAGCC
TCATCGGGAACGAAGCGACGTAAAATTATTCTAGCCAGCGATGACGATGA
TCATGATGATAATTCTAGCACTAACAGCAGCAGCAGCAGCAGCAGCAGTG
TCAGCAGCGAAGAAGAGGAGTCGAGTGAGGACGAGGGTTTGATGCACATG
CGTGTTCATGCTGCCTTTTTAGCGGAGCAAGGCGAGGTGCTGCCATTGTT
CATGCAGCGTAAGGCCATGAGTACCCGGGACGCTTTTCTTCTTTACCTGG
AAATGCTTGCGCGCTCTGTGGCTGATCCCGCCTTTCGCGAAGGGATGAGA
AGGAACCCCATGAGTGAGCGTTACGGCCGTTTCAGCAACGCCAAGAAGAA
GCTAGAGGATCTGATTTGCACCAAGCGCGAGTCGTTGCTTGGGTCCATGC
AGTGGAAGTTGCTTTGGGTGGAGGAACTGAGGGGGAGGCCCCGGTTTGAG
TTTTTCGATATCTTGGGAGAGAGACCGGATAGGTGCCAGGTGTGTGGGAG
GAGGAGGCATCCGTGTGCGTTTGAAGTGAGGCTGTCCGGGCCGAGGTATG
ATAGCATGGCTTTGTGGGAGAGCAGGCGGTGGGAAGAGGCATTGCCCTGT
CGCTTGGAGGTCTTTGGGACGCCGGAGGGGGATGAGGAGGTGAGAGAGGC
GGAGGAAGAGGAGGGGAAAGGGGAGGGGGAGGAGGAGGAAGAGGAGGAGG
AAGAAGGGAAGCCGATGGAGGGGAAGGTGGGGGGTTGGTGGCATGCCGGA
TCGACGTGCAAGTACAAGAGCTTGTGTTATTCATCGATGATTCATTACAA
GTATTATTTATTGCGGCGTGTGGCCAGGAGGTTGAAGGGGTTTGCGGTGA
CAGGGGCGAGGTCAAGGAGGGTGAAGAGGCGGGAGAGGGAGTTGCTGCAG
AGCCCGGTGAAGGCCAGGAAAAGTCGAAAGACGGGCTTGTATGAGGTGGT
GGTGTCGGTGGAGGAGTTGATGGAGGAGGAGGGGTGGGTGGAGGCGGAGT
TTGAAAGGTTTGAGAAGTTGTTGAGTCTGGTGGAGAATCTCATGATGGAT
GGGGGGGCGGCGACGAGCACCGTGACGACGGCAAGGCAGTTGGCTGGATA
TAGGAAATGTGCGTTATGCAGCTCTAGGAAGCTTGTTGCAGCGATAGTTG
TAGGAATAGCAGCAGCAGGAACAACAGAAGAGAGAGGTGGGAGAGAGGGA
CATACAGGGAAGGTTCAGGGGTGAATGGACTCCGAAGAGGAGGAAGAGTT
GGTCTCGAGAAGAAAGAAGGAAAGAAAGGAGCGAAGAAGGGGTTTGATTA
TGCGTGAGAAGGAAGGGGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
GACAAAGAGGAGGGTGGGGCAGCCTCATCGGGAACGAAGCGACGTAAAAT
TATTCTAGCCAGCGATGACGATGATCATGATGATAATTCTAGCACTAACA
GCAGCAGCAGCAGCAGCAGCAGTGTCAGCAGCGAAGAAGAGGAGTCGAGT
GAGGACGAGGGTTTGATGCACATGCGTGTTCATGCTGCCTTTTTAGCGGA
GCAAGGCGAGGTGCTGCCATTGTTCATGCAGCGTAAGGCCATGAGTACCC
GGGACGCTTTTCTTCTTTACCTGGAAATGCTTGCGCGCTCTGTGGCTGAT
CCCGCCTTTCGCGAAGGGATGAGAAGGAACCCCATGAGTGAGCGTTACGG
CCGTTTCAGCAACGCCAAGAAGAAGCTAGAGGATCTGATTTGCACCAAGC
GCGAGTCGTTGCTTGGGTCCATGCAGTGGAAGTTGCTTTGGGTGGAGGAA
CTGAGGGGGAGGCCCCGGTTTGAGTTTTTCGATATCTTGGGAGAGAGACC
GGATAGGTGCCAGGTGTGTGGGAGGAGGAGGCATCCGTGTGCGTTTGAAG
TGAGGCTGTCCGGGCCGAGGTATGATAGCATGGCTTTGTGGGAGAGCAGG
CGGTGGGAAGAGGCATTGCCCTGTCGCTTGGAGGTCTTTGGGACGCCGGA
GGGGGATGAGGAGGTGAGAGAGGCGGAGGAAGAGGAGGGGAAAGGGGAGG
GGGAGGAGGAGGAAGAGGAGGAGGAAGAAGGGAAGCCGATGGAGGGGAAG
GTGGGGGGTTGGTGGCATGCCGGATCGACGTGCAAGTACAAGAGCTTGTG
TTATTCATCGATGATTCATTACAAGTATTATTTATTGCGGCGTGTGGCCA
GGAGGTTGAAGGGGTTTGCGGTGACAGGGGCGAGGTCAAGGAGGGTGAAG
AGGCGGGAGAGGGAGTTGCTGCAGAGCCCGGTGAAGGCCAGGAAAAGTCG
AAAGACGGGCTTGTATGAGGTGGTGGTGTCGGTGGAGGAGTTGATGGAGG
AGGAGGGGTGGGTGGAGGCGGAGTTTGAAAGGTTTGAGAAGTTGTTGAGT
CTGGTGGAGAATCTCATGATGGATGGGGGGGCGGCGACGAGCACCGTGAC
GACGGCAAGGCAGTTGGCTGGATATAGGAAATGTGCGTTATGCAGCTCTA
GGAAGCTTGTTGCAGCGATAGTTGTAGGAATAGCAGCAGCAGGAACAACA
GAAGAGAGAGGTGGGAGAGAGGGACATACAGGGAAGGTTCAGGGGTGA

Synonyms

Publications