jgi.p|Nanoce1779_2|582736, mRNA_3602 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582736
Unique NamemRNA_3602
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1397
Alignment locationscaffold_6:748149..749711 -

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Properties
Property NameValue
TranscriptId582822
TrackFilteredModels2
ProteinId582736
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:748149..749711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582736gene_3602Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582736mRNA_3602-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3602CDS_3602Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3602 ID=mRNA_3602|Name=jgi.p|Nanoce1779_2|582736|organism=Nannochloropsis oceanica|type=mRNA|length=1397bp
GGGGTTGTTGGAGGGTTAGGTTATGGGATTGGTGTTGATGCTGGTGCTGG
AGGAGGAGGAGGAGGAGAAGGAGGAAGAGGAAGGGGAGGCGGAGCAGCAG
GAGGGGGAGGAAGAGTGGAGGGGGGAGGGGGAGGGGGTGATGAGGATCCA
TTGCTGCAGCCGCTGTTGGTGCCGCATGTGGCGGGGCCGGACTCTGTGGC
GGGGTCAAGGAGTCCAAACATTAGCTTCTCGCCGGCGGAGAATCATTTGA
TCTTGTGTGATGGGGTTTTGTGGGATGATAGGGCGGCGGGAGGAAGGATG
GTGGTCCATCGGTTTGATCGGTTGAGCCACGGGGGGTCGAATTTCGGGGC
GTTCCACCCGAACGGGAATGACGTCTTATTGGATGGCACGGTGTGGGACT
TGAGGACGCATAGCCTCAAGACGATGATGCCGGGGGTGGAGCACTGCGCG
GTGAAGTTCTCGGCGTGTGGCGATGTGTTGTATGCGTACCGTCCAGGGGG
TTTCGACGATGCGGAGGGAGGGTTCAGGGCGAATCAGAAAAGGGCCAGGG
AGATAACTTGTTTTCAGGTACTCGATGCCGCCGACTACGCCACCATTCAC
GTGCAAGAAATGGAGCGGCACGTTCTAGACTTGGCCTTGGACGATGTCGA
TCTCTATGTGTCGGTTGTGGAGGGGAGTACGACACCAGTCGGGCCATTTT
TGGCTGATGGTGCTGTGTGTCGTTTGTATGAGGTGGGAAGGAGGAGACCT
GACGAGGCAGATTCCGATTTAGATGACGCACACTCATCAGAGGAGGAAGA
TGACGATTGGGCGGGAGAGGAGGACGAGGACGATGATGAGGATGATGATG
ATGAGGAGGAGGAGGATGATGGAGAGGAGGGTAGTGGGATGGATTTGGGG
ATGTTGGAGGACGAAGACGAAGAGGAGGACAGTGATTTGGATGCGGCGCT
AGCGGCGCTTGAGGCAGAGGTGGAGAGTAGCGAGGCGTCTGAGGTCGGGG
ATGAGGGAGAGGAGGCTGAAGAAGGAGAGCAAGATGAGGAGGAGGAAGAG
GAGGAGGAGAGCACGGCGGACTCAGCGTCTTCGGGGAGCGAGGGAGATGA
CGAGGAGGAGGACAGTGATGATGACGATGATGACGGCGACGCGGCGCTTG
CAGCCTTGTTGCAGGCCGACGATTTGGAAGACGATGCCGACGATAGCGAT
TATAATGGGGAGGAGGATGACGAGGAGGATGACGAGGAGCATAGGGGAAG
GCGCAGACGGTGAGCGTGTACACTGATAAGTAGAGTGAGCGGGTTTGTGC
GACAGAGAGCATACACGCGTGTATCTGTGGAAATTACACCACATTTTGAC
AACATTACATATGAACACAGTAAAGAAACAATGAATCATGTGCAAAC
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protein sequence of jgi.p|Nanoce1779_2|582736

>mRNA_3602-protein ID=mRNA_3602-protein|Name=jgi.p|Nanoce1779_2|582736|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MVVHRFDRLSHGGSNFGAFHPNGNDVLLDGTVWDLRTHSLKTMMPGVEHC
AVKFSACGDVLYAYRPGGFDDAEGGFRANQKRAREITCFQVLDAADYATI
HVQEMERHVLDLALDDVDLYVSVVEGSTTPVGPFLADGAVCRLYEVGRRR
PDEADSDLDDAHSSEEEDDDWAGEEDEDDDEDDDDEEEEDDGEEGSGMDL
GMLEDEDEEEDSDLDAALAALEAEVESSEASEVGDEGEEAEEGEQDEEEE
EEEESTADSASSGSEGDDEEEDSDDDDDDGDAALAALLQADDLEDDADDS
DYNGEEDDEEDDEEHRGRRRR*
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mRNA from alignment at scaffold_6:748149..749711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3602 ID=mRNA_3602|Name=jgi.p|Nanoce1779_2|582736|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at scaffold_6:748149..749711- (Nannochloropsis oceanica)
GGGGTTGTTGGAGGGTTAGGTTATGGGATTGGTGTTGATGCTGGTGCTGG
AGGAGGAGGAGGAGGAGAAGGAGGAAGAGGAAGGGGAGGCGGAGCAGCAG
GAGGGGGAGGAAGAGTGGAGGGGGGAGGGGGAGGGGGTGATGAGGATCCA
TTGCTGCAGCCGCTGTTGGTGCCGCATGTGGCGGGGCCGGACTCTGTGGC
GGGGTCAAGGAGTCCAAACATTAGCTTCTCGCCGGCGGAGAATCATTTGA
TCTTGTGTGATGGGGTTTTGTGGGATGATAGGGCGGCGGGAGGAAGGATG
GTGGTCCATCGGTTTGATCGGTTGAGCCACGGGGGGTCGAATTTCGGGGC
GTTCCACCCGAACGGGAATGACGTCTTATTGGATGGCACGGTGTGGGACT
TGAGGACGCATAGCCTCAAGACGATGATGCCGGGGGTGGAGCACTGCGCG
GTGAAGTTCTCGGCGTGTGGCGATGTGTTGTATGCGTACCGTCCAGGGGG
TTTCGACGATGCGGAGGGAGGGTTCAGGGCGAATCAGAAAAGGGCCAGGG
AGATAACTTGTTTTCAGGTACGTTGGGAAGGTGCTTTAGACAGAGAGTCA
GGGCAAGGGCTTGTGCACATGAGGTCTTCCCTTGTGTGTGGGTTAGCCTG
GGAGGCGTTTCGCCTTGGGGTCTTCTAAACCAAATAACTATTTCTCCCGT
ATCCCTCCTTTCGTCCCTTCCCTCCCTCCGCAGGTACTCGATGCCGCCGA
CTACGCCACCATTCACGTGCAAGAAATGGAGCGGCACGTTCTAGACTTGG
CCTTGGACGATGTCGATCTCTATGTGTCGGTTGTGGAGGGGAGTACGACA
CCAGTCGGGCCATTTTTGGCTGATGGTGCTGTGTGTCGTTTGTATGAGGT
GGGAAGGAGGAGACCTGACGAGGCAGATTCCGATTTAGATGACGCACACT
CATCAGAGGAGGAAGATGACGATTGGGCGGGAGAGGAGGACGAGGACGAT
GATGAGGATGATGATGATGAGGAGGAGGAGGATGATGGAGAGGAGGGTAG
TGGGATGGATTTGGGGATGTTGGAGGACGAAGACGAAGAGGAGGACAGTG
ATTTGGATGCGGCGCTAGCGGCGCTTGAGGCAGAGGTGGAGAGTAGCGAG
GCGTCTGAGGTCGGGGATGAGGGAGAGGAGGCTGAAGAAGGAGAGCAAGA
TGAGGAGGAGGAAGAGGAGGAGGAGAGCACGGCGGACTCAGCGTCTTCGG
GGAGCGAGGGAGATGACGAGGAGGAGGACAGTGATGATGACGATGATGAC
GGCGACGCGGCGCTTGCAGCCTTGTTGCAGGCCGACGATTTGGAAGACGA
TGCCGACGATAGCGATTATAATGGGGAGGAGGATGACGAGGAGGATGACG
AGGAGCATAGGGGAAGGCGCAGACGGTGAGCGTGTACACTGATAAGTAGA
GTGAGCGGGTTTGTGCGACAGAGAGCATACACGCGTGTATCTGTGGAAAT
TACACCACATTTTGACAACATTACATATGAACACAGTAAAGAAACAATGA
ATCATGTGCAAAC
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Coding sequence (CDS) from alignment at scaffold_6:748149..749711-

>mRNA_3602 ID=mRNA_3602|Name=jgi.p|Nanoce1779_2|582736|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_6:748149..749711- (Nannochloropsis oceanica)
GTACTCGATGCCGCCGACTACGCCACCATTCACGTGCAAGAAATGGAGCG
GCACGTTCTAGACTTGGCCTTGGACGATGTCGATCTCTATGTGTCGGTTG
TGGAGGGGAGTACGACACCAGTCGGGCCATTTTTGGCTGATGGTGCTGTG
TGTCGTTTGTATGAGGTGGGAAGGAGGAGACCTGACGAGGCAGATTCCGA
TTTAGATGACGCACACTCATCAGAGGAGGAAGATGACGATTGGGCGGGAG
AGGAGGACGAGGACGATGATGAGGATGATGATGATGAGGAGGAGGAGGAT
GATGGAGAGGAGGGTAGTGGGATGGATTTGGGGATGTTGGAGGACGAAGA
CGAAGAGGAGGACAGTGATTTGGATGCGGCGCTAGCGGCGCTTGAGGCAG
AGGTGGAGAGTAGCGAGGCGTCTGAGGTCGGGGATGAGGGAGAGGAGGCT
GAAGAAGGAGAGCAAGATGAGGAGGAGGAAGAGGAGGAGGAGAGCACGGC
GGACTCAGCGTCTTCGGGGAGCGAGGGAGATGACGAGGAGGAGGACAGTG
ATGATGACGATGATGACGGCGACGCGGCGCTTGCAGCCTTGTTGCAGGCC
GACGATTTGGAAGACGATGCCGACGATAGCGATTATAATGGGGAGGAGGA
TGACGAGGAGGATGACGAGGAGCATAGGGGAAGGCGCAGACGGTGAATGG
TGGTCCATCGGTTTGATCGGTTGAGCCACGGGGGGTCGAATTTCGGGGCG
TTCCACCCGAACGGGAATGACGTCTTATTGGATGGCACGGTGTGGGACTT
GAGGACGCATAGCCTCAAGACGATGATGCCGGGGGTGGAGCACTGCGCGG
TGAAGTTCTCGGCGTGTGGCGATGTGTTGTATGCGTACCGTCCAGGGGGT
TTCGACGATGCGGAGGGAGGGTTCAGGGCGAATCAGAAAAGGGCCAGGGA
GATAACTTGTTTTCAGGTACTCGATGCCGCCGACTACGCCACCATTCACG
TGCAAGAAATGGAGCGGCACGTTCTAGACTTGGCCTTGGACGATGTCGAT
CTCTATGTGTCGGTTGTGGAGGGGAGTACGACACCAGTCGGGCCATTTTT
GGCTGATGGTGCTGTGTGTCGTTTGTATGAGGTGGGAAGGAGGAGACCTG
ACGAGGCAGATTCCGATTTAGATGACGCACACTCATCAGAGGAGGAAGAT
GACGATTGGGCGGGAGAGGAGGACGAGGACGATGATGAGGATGATGATGA
TGAGGAGGAGGAGGATGATGGAGAGGAGGGTAGTGGGATGGATTTGGGGA
TGTTGGAGGACGAAGACGAAGAGGAGGACAGTGATTTGGATGCGGCGCTA
GCGGCGCTTGAGGCAGAGGTGGAGAGTAGCGAGGCGTCTGAGGTCGGGGA
TGAGGGAGAGGAGGCTGAAGAAGGAGAGCAAGATGAGGAGGAGGAAGAGG
AGGAGGAGAGCACGGCGGACTCAGCGTCTTCGGGGAGCGAGGGAGATGAC
GAGGAGGAGGACAGTGATGATGACGATGATGACGGCGACGCGGCGCTTGC
AGCCTTGTTGCAGGCCGACGATTTGGAAGACGATGCCGACGATAGCGATT
ATAATGGGGAGGAGGATGACGAGGAGGATGACGAGGAGCATAGGGGAAGG
CGCAGACGGTGAATGGTGGTCCATCGGTTTGATCGGTTGAGCCACGGGGG
GTCGAATTTCGGGGCGTTCCACCCGAACGGGAATGACGTCTTATTGGATG
GCACGGTGTGGGACTTGAGGACGCATAGCCTCAAGACGATGATGCCGGGG
GTGGAGCACTGCGCGGTGAAGTTCTCGGCGTGTGGCGATGTGTTGTATGC
GTACCGTCCAGGGGGTTTCGACGATGCGGAGGGAGGGTTCAGGGCGAATC
AGAAAAGGGCCAGGGAGATAACTTGTTTTCAG
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Synonyms
Publications